Brachybacterium huguangmaarense strain BRM-3 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Dermabacteraceae; Brachybacterium.
Whole-Genome Sequencing of Brachybacterium huguangmaarense BRM-3, Isolated from Betula schmidtii
Submitted (05-OCT-2022) Department for Research, BAERYEO INNOVATION, Jungang-ro, Jeju 63208, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP107021.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio v. RSII\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 201.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/18/2022 09:06:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,002\nCDSs (total) :: 2,941\nGenes (coding) :: 2,884\nCDSs (with protein) :: 2,884\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 9 of 57\nPseudo Genes (incomplete) :: 47 of 57\nPseudo Genes (internal stop) :: 6 of 57\nPseudo Genes (multiple problems) :: 5 of 57\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012880213.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: similar to AA sequence:RefSeq:WP_011931281.1
COORDINATES: similar to AA sequence:RefSeq:WP_006940556.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016465436.1
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF024056.2
type IV secretory system conjugative DNA transfer family protein