Aurantiacibacter atlanticus strain s21-N3 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Aurantiacibacter.
The complete genome sequence of Erythrobacter atlanticus s21-N3
Submitted (27-APR-2016) Key Laboratory of Marine Biogenetic Resources, State of Oceanic Administration, The Third Institute of Oceanography, Daxue Road 184# Room 329, Xiamen, Fujian 361005, P.R.China
REFSEQ INFORMATION: The reference sequence is identical to\nCP015441.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2\nGenome Coverage :: 100x\nSequencing Technology :: Illumina MiSeq; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 22:11:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,140\nCDSs (total) :: 3,088\nGenes (coding) :: 3,052\nCDSs (with protein) :: 3,052\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 15 of 36\nPseudo Genes (incomplete) :: 21 of 36\nPseudo Genes (internal stop) :: 8 of 36\nPseudo Genes (multiple problems) :: 8 of 36\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010408889.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008831884.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006953701.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010408880.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681942.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950796.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017181640.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460574.1
COORDINATES: protein motif:HMM:NF014566.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019199468.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007163886.1
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: protein motif:HMM:NF013862.2
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018530997.1
COORDINATES: protein motif:HMM:NF024491.2
COORDINATES: similar to AA sequence:RefSeq:WP_019924351.1
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: similar to AA sequence:RefSeq:WP_010238219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011159636.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_003983162.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007163759.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_007163761.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007163762.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611561.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004988833.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013681683.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163789.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413806.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413786.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823680.1
COORDINATES: similar to AA sequence:RefSeq:WP_013269485.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426938.1
COORDINATES: protein motif:HMM:NF013832.2
COORDINATES: similar to AA sequence:RefSeq:WP_014075230.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_020820616.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020820615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003164269.1
COORDINATES: protein motif:HMM:NF001453.0
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013531561.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832180.1
COORDINATES: similar to AA sequence:RefSeq:WP_014075287.1
GO:0004333 - fumarate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004209542.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010235229.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010237244.1
COORDINATES: similar to AA sequence:RefSeq:WP_006833256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834275.1
COORDINATES: similar to AA sequence:RefSeq:WP_005851426.1
COORDINATES: similar to AA sequence:RefSeq:WP_012516919.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415095.1
COORDINATES: similar to AA sequence:RefSeq:WP_003044904.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603691.1
COORDINATES: similar to AA sequence:RefSeq:WP_010236517.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012111255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755584.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438312.1
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010408871.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890987.1
COORDINATES: similar to AA sequence:RefSeq:WP_008065174.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_007679389.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_007685336.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_007685334.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685329.1
COORDINATES: protein motif:HMM:NF021213.2
COORDINATES: similar to AA sequence:RefSeq:WP_007685322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685320.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_015460511.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_010890974.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: protein motif:HMM:NF018666.2
COORDINATES: similar to AA sequence:RefSeq:WP_019054280.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683193.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017501672.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832985.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019404587.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019054301.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011685901.1
COORDINATES: similar to AA sequence:RefSeq:WP_011685900.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017980820.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_017670718.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747511.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836366.1
COORDINATES: similar to AA sequence:RefSeq:WP_006959840.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213258.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_016918001.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012114891.1
COORDINATES: similar to AA sequence:RefSeq:WP_010682113.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010668596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163778.1
COORDINATES: similar to AA sequence:RefSeq:WP_017665842.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163774.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013301484.1
COORDINATES: similar to AA sequence:RefSeq:WP_008993465.1
COORDINATES: similar to AA sequence:RefSeq:WP_017941549.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834098.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834099.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834100.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603934.1
COORDINATES: similar to AA sequence:RefSeq:WP_008330690.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834102.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412775.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413847.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823986.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603940.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013474.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834109.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_007013472.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009823989.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006834112.1
COORDINATES: similar to AA sequence:RefSeq:WP_012480751.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_010240409.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163846.1
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006834118.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412724.1
COORDINATES: similar to AA sequence:RefSeq:WP_010240260.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412718.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010412712.1
COORDINATES: similar to AA sequence:RefSeq:WP_008601018.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010240412.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603825.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008603824.1
COORDINATES: similar to AA sequence:RefSeq:WP_006022055.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412654.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412661.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008610949.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412667.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008603819.1
COORDINATES: similar to AA sequence:RefSeq:WP_010410018.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006834125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010412683.1
COORDINATES: similar to AA sequence:RefSeq:WP_003046458.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413839.1
COORDINATES: similar to AA sequence:RefSeq:WP_010239136.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013941.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413840.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008603823.1
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006970835.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578671.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006952696.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686605.1
COORDINATES: similar to AA sequence:RefSeq:WP_008068520.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013040122.1
COORDINATES: similar to AA sequence:RefSeq:WP_005413376.1
COORDINATES: similar to AA sequence:RefSeq:WP_006952687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688513.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_016510754.1
COORDINATES: similar to AA sequence:RefSeq:WP_006953773.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818778.1
COORDINATES: similar to AA sequence:RefSeq:WP_018250868.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007688483.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054348.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF014273.2
COORDINATES: similar to AA sequence:RefSeq:WP_007015933.1
strawberry notch C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016510927.1