Streptomyces yangpuensis strain CM253 plasmid pshk1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (08-AUG-2022) Shanghai University of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, shanghai 201203, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP102517.1.\nBacteria and source DNA available from The rhizosphere soil samples\nof crocus sativus.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/16/2022 12:32:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,336\nCDSs (total) :: 7,239\nGenes (coding) :: 7,062\nCDSs (with protein) :: 7,062\nGenes (RNA) :: 97\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 3\nPseudo Genes (total) :: 177\nCDSs (without protein) :: 177\nPseudo Genes (ambiguous residues) :: 0 of 177\nPseudo Genes (frameshifted) :: 48 of 177\nPseudo Genes (incomplete) :: 153 of 177\nPseudo Genes (internal stop) :: 6 of 177\nPseudo Genes (multiple problems) :: 29 of 177\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018468582.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020251.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024700.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018470209.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF016430.2
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003995419.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645386.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523884.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_009321052.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645497.1
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_017236511.1
COORDINATES: protein motif:HMM:NF040316.1
COORDINATES: similar to AA sequence:RefSeq:WP_018889580.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007266491.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_020145609.1
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_008409289.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_015660241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014139288.1
trypsin-like peptidase domain-containing protein