Streptomyces yangpuensis strain CM253 plasmid psa3239, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (08-AUG-2022) Shanghai University of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, shanghai 201203, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP102516.1.\nBacteria and source DNA available from The rhizosphere soil samples\nof crocus sativus.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/16/2022 12:32:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,336\nCDSs (total) :: 7,239\nGenes (coding) :: 7,062\nCDSs (with protein) :: 7,062\nGenes (RNA) :: 97\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 3\nPseudo Genes (total) :: 177\nCDSs (without protein) :: 177\nPseudo Genes (ambiguous residues) :: 0 of 177\nPseudo Genes (frameshifted) :: 48 of 177\nPseudo Genes (incomplete) :: 153 of 177\nPseudo Genes (internal stop) :: 6 of 177\nPseudo Genes (multiple problems) :: 29 of 177\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018491008.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015054.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020550093.1
COORDINATES: similar to AA sequence:RefSeq:WP_017569212.1
COORDINATES: similar to AA sequence:RefSeq:WP_017569211.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017601763.1
COORDINATES: similar to AA sequence:RefSeq:WP_019765801.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF014872.2
COORDINATES: similar to AA sequence:RefSeq:WP_020141227.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017240301.1
COORDINATES: similar to AA sequence:RefSeq:WP_018958250.1
COORDINATES: similar to AA sequence:RefSeq:WP_014151945.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014677084.1
COORDINATES: similar to AA sequence:RefSeq:WP_016471741.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010645386.1
COORDINATES: similar to AA sequence:RefSeq:WP_005063154.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007267664.1
COORDINATES: similar to AA sequence:RefSeq:WP_018512976.1
COORDINATES: similar to AA sequence:RefSeq:WP_003963749.1
COORDINATES: similar to AA sequence:RefSeq:WP_018845748.1
COORDINATES: protein motif:HMM:NF037271.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_041767551.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611378.1
COORDINATES: similar to AA sequence:RefSeq:WP_008736995.1
COORDINATES: similar to AA sequence:RefSeq:WP_003953475.1
COORDINATES: similar to AA sequence:RefSeq:WP_008736997.1
COORDINATES: similar to AA sequence:RefSeq:WP_011027290.1
COORDINATES: similar to AA sequence:RefSeq:WP_017242038.1
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_013225661.1
COORDINATES: similar to AA sequence:RefSeq:WP_018547018.1
COORDINATES: similar to AA sequence:RefSeq:WP_016335191.1
COORDINATES: similar to AA sequence:RefSeq:WP_019891232.1
COORDINATES: similar to AA sequence:RefSeq:WP_006129981.1
COORDINATES: similar to AA sequence:RefSeq:WP_017238471.1
COORDINATES: protein motif:HMM:NF017874.2
COORDINATES: similar to AA sequence:RefSeq:WP_007266534.1
COORDINATES: similar to AA sequence:RefSeq:WP_010265429.1
COORDINATES: protein motif:HMM:NF025447.2
COORDINATES: similar to AA sequence:RefSeq:WP_019062025.1
COORDINATES: similar to AA sequence:RefSeq:WP_012786996.1
COORDINATES: similar to AA sequence:RefSeq:WP_014057806.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014057807.1
COORDINATES: similar to AA sequence:RefSeq:WP_019062955.1
COORDINATES: similar to AA sequence:RefSeq:WP_004981385.1
COORDINATES: similar to AA sequence:RefSeq:WP_020119290.1
COORDINATES: similar to AA sequence:RefSeq:WP_003984592.1
COORDINATES: similar to AA sequence:RefSeq:WP_013226605.1
COORDINATES: protein motif:HMM:NF017464.2
COORDINATES: protein motif:HMM:NF019619.2
COORDINATES: similar to AA sequence:RefSeq:WP_018784163.1
COORDINATES: protein motif:HMM:NF028171.2
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019607086.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_009192552.1
COORDINATES: similar to AA sequence:RefSeq:WP_009999640.1
COORDINATES: similar to AA sequence:RefSeq:WP_016825877.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017238028.1
COORDINATES: similar to AA sequence:RefSeq:WP_011956054.1
COORDINATES: similar to AA sequence:RefSeq:WP_015662163.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019891726.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020126329.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
snapalysin family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:NF024890.2
COORDINATES: protein motif:HMM:NF012935.2
COORDINATES: protein motif:HMM:NF023737.2
sugar dehydrogenase complex small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020123155.1
COORDINATES: similar to AA sequence:RefSeq:WP_012886840.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018585390.1
COORDINATES: similar to AA sequence:RefSeq:WP_012886839.1
COORDINATES: similar to AA sequence:RefSeq:WP_019058449.1
COORDINATES: similar to AA sequence:RefSeq:WP_020415764.1
COORDINATES: protein motif:HMM:NF025580.2
COORDINATES: similar to AA sequence:RefSeq:WP_014057104.1
COORDINATES: similar to AA sequence:RefSeq:WP_006134594.1
COORDINATES: similar to AA sequence:RefSeq:WP_012921607.1
COORDINATES: similar to AA sequence:RefSeq:WP_003978718.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_017545911.1
COORDINATES: similar to AA sequence:RefSeq:WP_018514771.1
COORDINATES: similar to AA sequence:RefSeq:WP_015031606.1
COORDINATES: similar to AA sequence:RefSeq:WP_003995034.1
COORDINATES: similar to AA sequence:RefSeq:WP_005315938.1
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: similar to AA sequence:RefSeq:WP_011027483.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009999452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891829.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_018841738.1
COORDINATES: similar to AA sequence:RefSeq:WP_015035374.1
COORDINATES: similar to AA sequence:RefSeq:WP_008736950.1
COORDINATES: similar to AA sequence:RefSeq:WP_008736948.1
COORDINATES: similar to AA sequence:RefSeq:WP_018511040.1
COORDINATES: similar to AA sequence:RefSeq:WP_009192882.1
COORDINATES: similar to AA sequence:RefSeq:WP_015655078.1
COORDINATES: similar to AA sequence:RefSeq:WP_019524936.1
COORDINATES: similar to AA sequence:RefSeq:WP_020132700.1
COORDINATES: similar to AA sequence:RefSeq:WP_011031867.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_019982458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018513180.1
COORDINATES: similar to AA sequence:RefSeq:WP_019056501.1
von Willebrand factor type A domain-containing protein
COORDINATES: protein motif:HMM:NF012762.2
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009077189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011031721.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016497941.1
COORDINATES: similar to AA sequence:RefSeq:WP_012998565.1
COORDINATES: similar to AA sequence:RefSeq:WP_017241497.1
COORDINATES: similar to AA sequence:RefSeq:WP_018105013.1
COORDINATES: similar to AA sequence:RefSeq:WP_006382983.1
COORDINATES: similar to AA sequence:RefSeq:WP_016817584.1
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_018529634.1
COORDINATES: similar to AA sequence:RefSeq:WP_004924058.1
COORDINATES: similar to AA sequence:RefSeq:WP_018104970.1
COORDINATES: similar to AA sequence:RefSeq:WP_020129117.1
COORDINATES: similar to AA sequence:RefSeq:WP_005475892.1
COORDINATES: similar to AA sequence:RefSeq:WP_006137057.1
COORDINATES: similar to AA sequence:RefSeq:WP_010475855.1
COORDINATES: similar to AA sequence:RefSeq:WP_018848028.1
COORDINATES: protein motif:HMM:NF013936.2
COORDINATES: similar to AA sequence:RefSeq:WP_015034649.1
COORDINATES: similar to AA sequence:RefSeq:WP_015031786.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669623.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608136.1
DUF4344 domain-containing metallopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_007261773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010276576.1
COORDINATES: similar to AA sequence:RefSeq:WP_009188352.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003955186.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014136084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008740603.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019070098.1
COORDINATES: similar to AA sequence:RefSeq:WP_016471689.1
COORDINATES: similar to AA sequence:RefSeq:WP_003960268.1
COORDINATES: similar to AA sequence:RefSeq:WP_020119349.1
COORDINATES: similar to AA sequence:RefSeq:WP_006097360.1
COORDINATES: similar to AA sequence:RefSeq:WP_005459039.1
COORDINATES: similar to AA sequence:RefSeq:WP_016471636.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020133231.1
COORDINATES: similar to AA sequence:RefSeq:WP_006345201.1
COORDINATES: similar to AA sequence:RefSeq:WP_018352860.1
COORDINATES: protein motif:HMM:NF039639.1
COORDINATES: similar to AA sequence:RefSeq:WP_003900223.1
COORDINATES: similar to AA sequence:RefSeq:WP_007263783.1
COORDINATES: similar to AA sequence:RefSeq:WP_014151368.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003962191.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011554459.1
COORDINATES: similar to AA sequence:RefSeq:WP_003151740.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008740777.1
COORDINATES: similar to AA sequence:RefSeq:WP_018560178.1