Blattabacterium punctulatus strain CPUml plasmid pCPUml, complete sequence.
type: Entry
definition: Blattabacterium punctulatus strain CPUml plasmid pCPUml, complete sequence.
sequence version: NZ_CP029809.1
sequence date: 2022-10-06
sequence: sequence
division: CON
label: NZ_CP029809.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN09356176
keyword: RefSeq
source: Blattabacterium punctulatus
organism: Blattabacterium punctulatus
taxonomy: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Blattabacteriaceae; Blattabacterium.
reference: 1
references: 29860278
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP029809.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 18:12:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 600\nCDSs (total) :: 563\nGenes (coding) :: 558\nCDSs (with protein) :: 558\nGenes (RNA) :: 37\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 2\nPseudo Genes (total) :: 5\nCDSs (without protein) :: 5\nPseudo Genes (ambiguous residues) :: 0 of 5\nPseudo Genes (frameshifted) :: 5 of 5\nPseudo Genes (incomplete) :: 0 of 5\nPseudo Genes (internal stop) :: 1 of 5\nPseudo Genes (multiple problems) :: 1 of 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 3419
topology: circular
so has quality: SO_0000988
location: 1..3419
location: region:1-3419:1
RO_0002162: 164514

NZ_CP029809
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN09356176
type: BioSample
SIO_000068: biosample

1
title: Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches
author: Kinjo, Y.
author: Bourguignon, T.
author: Tong, K.J.
author: Kuwahara, H.
author: Lim, S.J.
author: Yoon, K.B.
author: Shigenobu, S.
author: Park, Y.C.
author: Nalepa, C.A.
author: Hongoh, Y.
author: Ohkuma, M.
author: Lo, N.
author: Tokuda, G.
journal: Genome Biol Evol
volume: 10
issue: 6
pages: 1622-1630
year: 2018
pubmed: 29860278

29860278
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Kinjo, Y.
journal: Submitted (07-JUN-2018) Evolutionary Genomics Unit, Okinawa Institute of Science and Technology, 1919-1, Tancha, Onna, Okinawa 9040495, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3419:1
position: 3419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3419:1:source
so part of: sequence
organism: Blattabacterium punctulatus
mol type: genomic DNA
strain: CPUml
host: Cryptocercus punctulatus
plasmid: pCPUml
country: USA:VA
collection date: 2016

164514
type: Taxonomy
SIO_000068: taxonomy

DM780_RS02970
type: Gene
subclass of: SO_0000704
RO_0002162: 164514
locus tag: DM780_RS02970
old locus tag: DM780_02970
so part of: sequence
location: complement(87..425)
location: region:87-425:-1
so has part: feature:87-425:-1:exon
subclass of: SO_0000010

66557055
type: Gene
SIO_000068: ncbigene

position:87:-1
position: 87
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425:-1
position: 425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87-425:-1:exon

DM780_RS02970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 164514
locus tag: DM780_RS02970
old locus tag: DM780_02970
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLFFFILSMMFFTSCNDDNLTGGHPPEEPEKTNTPTIGMAIDPPPAPTTSSPFFLSDFEKDEKEKSRIQIEELMNQDSQLKKIIEELAKAEKEKAEKAKAEKEKAEKEKA
SIO_010081: DM780_RS02970
subclass of: SO_0000673
so part of: DM780_RS02970
location: complement(87..425)
location: region:87-425:-1
so has part: feature:87-425:-1:exon

WP_148265053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:87-425:-1:exon

DM780_RS02975
type: Gene
subclass of: SO_0000704
RO_0002162: 164514
gene: dut
locus tag: DM780_RS02975
old locus tag: DM780_02975
so part of: sequence
location: 508..900
location: region:508-900:1
so has part: feature:508-900:1:exon
subclass of: SO_0000010

66557056
type: Gene
SIO_000068: ncbigene

position:508:1
position: 508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:900:1
position: 900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508-900:1:exon

DM780_RS02975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 164514
gene: dut
locus tag: DM780_RS02975
old locus tag: DM780_02975
EC number: 3.6.1.23
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014200386.1
GO function: GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO process: GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dUTP diphosphatase
translation: MSVLIKIRNLSHHIFPYYATEGAAGIDLQAYLEKEIIIPSMERKIIKTGIFIEIPTGYEAQIRPRSGLALRHGITVLNNPGTIDSDYRGEIKILLINLSSHTFTVKDGDRIAQIIVYKYEKVKWNEIKKK
SIO_010081: DM780_RS02975
subclass of: SO_0000673
so part of: DM780_RS02975
location: 508..900
location: region:508-900:1
so has part: feature:508-900:1:exon

WP_014200386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:508-900:1:exon

DM780_RS02980
type: Gene
subclass of: SO_0000704
RO_0002162: 164514
locus tag: DM780_RS02980
old locus tag: DM780_02980
so part of: sequence
location: complement(905..1381)
location: region:905-1381:-1
so has part: feature:905-1381:-1:exon
subclass of: SO_0000010

66557057
type: Gene
SIO_000068: ncbigene

position:905:-1
position: 905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1381:-1
position: 1381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:905-1381:-1:exon

DM780_RS02980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 164514
locus tag: DM780_RS02980
old locus tag: DM780_02980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014164026.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1599 domain-containing protein
translation: MKNNKTSMQYDVISNECRTHFLKKKFLIPKKLCNYILIQIDQNNWIEIVNYSVLAGIMIQQKKIDSMLSVSATIIIDVYDQYIKKAKSLMEKKNSDYEEAWKYMSISSIKDLIMQKIFRIQGMEKRFYEVENYAYKVQDNYIDILNYAIFALIKMKNP
SIO_010081: DM780_RS02980
subclass of: SO_0000673
so part of: DM780_RS02980
location: complement(905..1381)
location: region:905-1381:-1
so has part: feature:905-1381:-1:exon

WP_014726903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:905-1381:-1:exon

DM780_RS02985
type: Gene
subclass of: SO_0000704
RO_0002162: 164514
locus tag: DM780_RS02985
old locus tag: DM780_02985
so part of: sequence
location: complement(1388..1768)
location: region:1388-1768:-1
so has part: feature:1388-1768:-1:exon
subclass of: SO_0000010

66557058
type: Gene
SIO_000068: ncbigene

position:1388:-1
position: 1388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1768:-1
position: 1768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1388-1768:-1:exon

DM780_RS02985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 164514
locus tag: DM780_RS02985
old locus tag: DM780_02985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014200387.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VRR-NUC domain-containing protein
translation: MKRKITPWYNTLGKEQLLHSSVCDYLDYEYPHIFYFHPHNEARRTPYERFLIKVMRLRPGLPDILVPIPKKGRTGMALEFKIKPNKLTENQIHIIDIFNSYNWKVNVCYDFDEAKIYIDQYLKKID
SIO_010081: DM780_RS02985
subclass of: SO_0000673
so part of: DM780_RS02985
location: complement(1388..1768)
location: region:1388-1768:-1
so has part: feature:1388-1768:-1:exon

WP_014726904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1388-1768:-1:exon

DM780_RS02990
type: Gene
subclass of: SO_0000704
RO_0002162: 164514
locus tag: DM780_RS02990
old locus tag: DM780_02990
so part of: sequence
location: complement(1799..2872)
location: region:1799-2872:-1
so has part: feature:1799-2872:-1:exon
subclass of: SO_0000010

66557059
type: Gene
SIO_000068: ncbigene

position:1799:-1
position: 1799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2872:-1
position: 2872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1799-2872:-1:exon

DM780_RS02990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 164514
locus tag: DM780_RS02990
old locus tag: DM780_02990
EC number: 1.17.4.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014726905.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
GO process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonucleotide-diphosphate reductase subunit beta
translation: MGITKDRLNFKPFEYQWAYEYWFKQQNAHWLHTEINMQSDIHDWNENLSDREKNVIGDILKGFTQTETEVGNYWSEMIPKWFPIPEIKMMGQAFGSFETIHAVAYSYLNDILGLDNFHAFLEDEATMKKLKVLMDIRKSDHGKYNRKEIAKSIALFSAAAEGIQLFSSFAVLLSFRKSNRLKGIGQQIIFSVRDESLHSEAGCKIFRTFCEENDGLKNSVADSIYYGMDLALKNEFIFIDQIFDNGDIPTMKREELKNFMKDRANIKLKELGLSDAYCIDKNMLDNMSWFYITISGEQQTDFFDNRETGYSKPNEDWNEDLFVLDDKKTSTEKKILEILLKNKKENLGNSGCVSCES
SIO_010081: DM780_RS02990
subclass of: SO_0000673
so part of: DM780_RS02990
location: complement(1799..2872)
location: region:1799-2872:-1
so has part: feature:1799-2872:-1:exon

WP_014726905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1799-2872:-1:exon