Streptomyces alfalfae strain XN-04 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
The Biocontrol and Plant Growth-promoting Properties of Streptomyces alfalfa XN-04 Revealed by Functional and Genomic Analysis
Submitted (20-AUG-2020) College of Plant Protection, Northwest A&F University, No. 3 Taicheng Road, Yangling 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP060743.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:04:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,238\nCDSs (total) :: 7,140\nGenes (coding) :: 6,949\nCDSs (with protein) :: 6,949\nGenes (RNA) :: 98\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 3\nPseudo Genes (total) :: 191\nCDSs (without protein) :: 191\nPseudo Genes (ambiguous residues) :: 0 of 191\nPseudo Genes (frameshifted) :: 79 of 191\nPseudo Genes (incomplete) :: 156 of 191\nPseudo Genes (internal stop) :: 23 of 191\nPseudo Genes (multiple problems) :: 62 of 191\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014061773.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010361184.1
COORDINATES: similar to AA sequence:RefSeq:WP_020133973.1
COORDINATES: similar to AA sequence:RefSeq:WP_010275283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010275280.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361190.1
COORDINATES: similar to AA sequence:RefSeq:WP_010275270.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361073.1
COORDINATES: similar to AA sequence:RefSeq:WP_011029774.1
COORDINATES: similar to AA sequence:RefSeq:WP_018468530.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742743.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446002.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006347291.1
COORDINATES: similar to AA sequence:RefSeq:WP_009067759.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_010361213.1
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020115756.1