Burkholderia savannae strain MSMB0852 plasmid pMSMB0852, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Diversity of Burkholderia near neighbor genomes
Submitted (01-DEC-2015) MGGen, Northern Arizona University, ARD, Flagstaff, AZ 86011, USA
Submitted (19-NOV-2015) Center for Microbial Genetics and Genomics, Northern Arizona University, Building 56, 3rd Floor, Flagstaff, AZ 86011, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP013423.1.\nSource DNA available from Dr. David Wagner, Northern Arizona\nUniversity, Flagstaff AZ.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.0\nGenome Coverage :: 50x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:52:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,286\nCDSs (total) :: 6,210\nGenes (coding) :: 6,060\nCDSs (with protein) :: 6,060\nGenes (RNA) :: 76\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 150\nCDSs (without protein) :: 150\nPseudo Genes (ambiguous residues) :: 0 of 150\nPseudo Genes (frameshifted) :: 61 of 150\nPseudo Genes (incomplete) :: 123 of 150\nPseudo Genes (internal stop) :: 20 of 150\nPseudo Genes (multiple problems) :: 45 of 150\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011798648.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009242059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723336.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013436689.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242071.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242072.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006488612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798634.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242076.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723311.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723312.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242080.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436697.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242082.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_009242083.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_009277744.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_009242085.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242086.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242088.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436704.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436706.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436707.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242092.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_009916559.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_009242094.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_012493834.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487422.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242097.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242098.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242099.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436716.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013436718.1
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242138.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013723316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798685.1
COORDINATES: similar to AA sequence:RefSeq:WP_006748089.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242133.1
COORDINATES: similar to AA sequence:RefSeq:WP_012464973.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436721.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798677.1
COORDINATES: protein motif:HMM:NF037081.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611480.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012336742.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242146.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011798667.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798665.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004637276.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637268.1
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_011145909.1
COORDINATES: similar to AA sequence:RefSeq:WP_010104815.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_009916536.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695194.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488617.1