Nocardiopsis exhalans strain JCM11759T plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.
Submitted (17-JUN-2022) College of Life and Environment Science, Hunan University of Arts and Science, No. 3150 Dongting Avenue, Changde, Hunan 415000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP099838.1.\nBacteria and source DNA available from Ping Mo.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/14/2023 04:54:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,845\nCDSs (total) :: 6,767\nGenes (coding) :: 6,677\nCDSs (with protein) :: 6,677\nGenes (RNA) :: 78\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 3\nPseudo Genes (total) :: 90\nCDSs (without protein) :: 90\nPseudo Genes (ambiguous residues) :: 0 of 90\nPseudo Genes (frameshifted) :: 32 of 90\nPseudo Genes (incomplete) :: 65 of 90\nPseudo Genes (internal stop) :: 7 of 90\nPseudo Genes (multiple problems) :: 13 of 90\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Guide to Japan Collection of Microorganisms
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013122.2
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040183.1
Scr1 family TA system antitoxin-like transcriptional regulator
COORDINATES: protein motif:HMM:NF024970.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014909084.1
COORDINATES: protein motif:HMM:NF016550.2
COORDINATES: similar to AA sequence:RefSeq:WP_012850723.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017541569.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_017602310.1
COORDINATES: protein motif:HMM:NF040402.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_017589447.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017571800.1
COORDINATES: protein motif:HMM:NF024062.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_017605135.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022432.2
COORDINATES: similar to AA sequence:RefSeq:WP_018835391.1
COORDINATES: similar to AA sequence:RefSeq:WP_017584498.1
COORDINATES: similar to AA sequence:RefSeq:WP_013152913.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]