Zophobihabitans entericus strain IPMB12 plasmid pIPMB12, complete sequence.
type: Entry
definition: Zophobihabitans entericus strain IPMB12 plasmid pIPMB12, complete sequence.
sequence version: NZ_CP050254.1
sequence date: 2022-12-01
sequence: sequence
division: CON
label: NZ_CP050254.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14395376
keyword: RefSeq
source: Zophobihabitans entericus
organism: Zophobihabitans entericus
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Zophobihabitans.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP050254.1.\nBacteria and source DNA available from BCRC 80908.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. v1.2.09\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 203.8x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/01/2022 02:25:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,414\nCDSs (total) :: 2,350\nGenes (coding) :: 2,327\nCDSs (with protein) :: 2,327\nGenes (RNA) :: 64\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 5\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 4 of 23\nPseudo Genes (incomplete) :: 21 of 23\nPseudo Genes (internal stop) :: 1 of 23\nPseudo Genes (multiple problems) :: 3 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 32446
topology: circular
so has quality: SO_0000988
location: 1..32446
location: region:1-32446:1
RO_0002162: 1635327

NZ_CP050254
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14395376
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Orbus sp. IPMB12 (BCRC 80908)
author: Lo, W.-S.
author: Chang, T.-H.
author: Kuo, C.-H.
journal: Unpublished

2
title: Direct Submission
author: Lo, W.-S.
author: Chang, T.-H.
author: Kuo, C.-H.
journal: Submitted (18-MAR-2020) Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Taipei 11529, Taiwan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32446:1
position: 32446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32446:1:source
so part of: sequence
organism: Zophobihabitans entericus
mol type: genomic DNA
strain: IPMB12
host: Zophobas atratus
culture collection: BCRC:80908
type material: type strain of Zophobihabitans entericus
plasmid: pIPMB12
country: Taiwan
collection date: 2013-05-09

1635327
type: Taxonomy
SIO_000068: taxonomy

IPMB12_RS11915
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: trbB
locus tag: IPMB12_RS11915
old locus tag: IPMB12_11915
so part of: sequence
location: join(32210..32446,1..729)
location: region:1-32446:1
so has part: feature:32210-32446:1:exon
so has part: feature:1-729:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:32210-32446:1:exon

position:32210:1
position: 32210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-729:1:exon

position:729:1
position: 729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IPMB12_RS11915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: trbB
locus tag: IPMB12_RS11915
old locus tag: IPMB12_11915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011013261.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer ATPase TrbB
translation: MTPNHIDDIDSSKKRALLKLERDLGDIVTYLKDPKTVEVILNPDGNIWQEKQGEPMKKVGSLSSSRAESIMKTIAAYHGKELTRLSPILECELPLDNSRFAGQIPPIVQSPAFAIRKKANSIFTLDQYVESNIMTERQSYLLKKYIKAHKNILVVGGTGSGKTTLLNAIIDEMVKINPTERIVIIEDTGELQCAAENSVQFHTTIQITMTHLLKTSLRIRPDRILVGEVRGEEALDLLDAWNTGHDGGLATLHSTTAESGLTRLKSLITRNRAAPKDIEPLIAEAVHLIINIIRTPTGRKINKIIEVLGYENNQYVIKNVE
SIO_010081: IPMB12_RS11915
subclass of: SO_0000673
so part of: IPMB12_RS11915
location: join(32210..32446,1..729)
location: region:1-32446:1
so has part: feature:32210-32446:1:exon
so has part: feature:1-729:1:exon

WP_166917803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32210-32446:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-729:1:exon

IPMB12_RS11920
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11920
old locus tag: IPMB12_11920
so part of: sequence
location: 1052..1240
location: region:1052-1240:1
so has part: feature:1052-1240:1:exon
subclass of: SO_0000010

position:1052:1
position: 1052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1240:1
position: 1240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1052-1240:1:exon

IPMB12_RS11920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11920
old locus tag: IPMB12_11920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRKEGDFLSLSELHVASYLDSLRFENEEEKVNAITALINVALNELEKSTCKNNYLRYLGLD
SIO_010081: IPMB12_RS11920
subclass of: SO_0000673
so part of: IPMB12_RS11920
location: 1052..1240
location: region:1052-1240:1
so has part: feature:1052-1240:1:exon

WP_166917804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1052-1240:1:exon

IPMB12_RS11925
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11925
old locus tag: IPMB12_11925
so part of: sequence
location: 1250..1510
location: region:1250-1510:1
so has part: feature:1250-1510:1:exon
subclass of: SO_0000010

position:1250:1
position: 1250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1510:1
position: 1510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1250-1510:1:exon

IPMB12_RS11925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11925
old locus tag: IPMB12_11925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSIISIITIIISLILATLLIINGIYSLKPIYTIFGLFNTNQIEQEHMEWIQYKKEHICKLIERNDISNSYKWDCNKIILINKFKE
SIO_010081: IPMB12_RS11925
subclass of: SO_0000673
so part of: IPMB12_RS11925
location: 1250..1510
location: region:1250-1510:1
so has part: feature:1250-1510:1:exon

WP_166917805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1250-1510:1:exon

IPMB12_RS11930
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: trbK
locus tag: IPMB12_RS11930
old locus tag: IPMB12_11930
so part of: sequence
location: 1614..1844
location: region:1614-1844:1
so has part: feature:1614-1844:1:exon
subclass of: SO_0000010

position:1614:1
position: 1614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1844:1
position: 1844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1614-1844:1:exon

IPMB12_RS11930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: trbK
locus tag: IPMB12_RS11930
old locus tag: IPMB12_11930
inference: COORDINATES: protein motif:HMM:TIGR04359.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO process: GO:0009292 - horizontal gene transfer [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: entry exclusion lipoprotein TrbK
translation: MNTKIITIASLLSIFFLAGCDEKKPELSIEEQAKQYQCSDYQNITNDEVKAALLKRCPRINTNFVPSTSSKGMLSE
SIO_010081: IPMB12_RS11930
subclass of: SO_0000673
so part of: IPMB12_RS11930
location: 1614..1844
location: region:1614-1844:1
so has part: feature:1614-1844:1:exon

WP_166917806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1614-1844:1:exon

IPMB12_RS11935
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11935
old locus tag: IPMB12_11935
so part of: sequence
location: complement(1856..2539)
location: region:1856-2539:-1
so has part: feature:1856-2539:-1:exon
subclass of: SO_0000010

position:1856:-1
position: 1856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2539:-1
position: 2539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1856-2539:-1:exon

IPMB12_RS11935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11935
old locus tag: IPMB12_11935
inference: COORDINATES: protein motif:HMM:NF017655.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraX family protein
translation: MNKLVPKLSSGNIELLKLIAAFLMTMDHVNKYLYNSLLSYCFELGRLSMPIFVFVLAYNLAFNSARFKVIKRLALCGTLSTPIFIALGGLKWGWYPLNIMFTLLSISLVIYAIERKYFVLTAALFLFCGAFVEYWWPSIGFGVSIYLYYKLGDMKFFFFGVISLCLLWFVNGNIYAVFGLILIYIISLLDIKVVRLKHLFYIYYPLHLAVILVIKHLMIQQGYLFFY
SIO_010081: IPMB12_RS11935
subclass of: SO_0000673
so part of: IPMB12_RS11935
location: complement(1856..2539)
location: region:1856-2539:-1
so has part: feature:1856-2539:-1:exon

WP_166917807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1856-2539:-1:exon

IPMB12_RS11940
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: ssb
locus tag: IPMB12_RS11940
old locus tag: IPMB12_11940
so part of: sequence
location: complement(2532..2870)
location: region:2532-2870:-1
so has part: feature:2532-2870:-1:exon
subclass of: SO_0000010

position:2532:-1
position: 2532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2870:-1
position: 2870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2532-2870:-1:exon

IPMB12_RS11940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: ssb
locus tag: IPMB12_RS11940
old locus tag: IPMB12_11940
inference: COORDINATES: protein motif:HMM:TIGR00621.2
GO function: GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MNKVTLVGHVGKDPEISEKFINFSVATTESWIDKQSGERKEITDWTRVSVNNPYVVKCISGTIKKGCKVYVDGSIKTRSWEDDQKVKHYITEVVVNYSGEVIVSMPAPKSDE
SIO_010081: IPMB12_RS11940
subclass of: SO_0000673
so part of: IPMB12_RS11940
location: complement(2532..2870)
location: region:2532-2870:-1
so has part: feature:2532-2870:-1:exon

WP_166917808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2532-2870:-1:exon

IPMB12_RS11945
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11945
old locus tag: IPMB12_11945
pseudo: true
so part of: sequence
location: complement(<2960..3397)
location: region:2960-3397:-1
so has part: feature:2960-3397:-1:exon
subclass of: SO_0000010

position:2960:-1
position: 2960
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:3397:-1
position: 3397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2960-3397:-1:exon

IPMB12_RS11945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11945
old locus tag: IPMB12_11945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014579503.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: muramidase
SIO_010081: IPMB12_RS11945
subclass of: SO_0000673
so part of: IPMB12_RS11945
location: complement(<2960..3397)
location: region:2960-3397:-1
so has part: feature:2960-3397:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2960-3397:-1:exon

IPMB12_RS11950
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11950
old locus tag: IPMB12_11950
so part of: sequence
location: complement(3399..4016)
location: region:3399-4016:-1
so has part: feature:3399-4016:-1:exon
subclass of: SO_0000010

position:3399:-1
position: 3399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4016:-1
position: 4016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3399-4016:-1:exon

IPMB12_RS11950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11950
old locus tag: IPMB12_11950
inference: COORDINATES: protein motif:HMM:NF019069.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbM/KikA/MpfK family conjugal transfer protein
translation: MKKLFTIGVSFMLFVISTSINANLPGVPNALPGSEILKGDERTACEVIICMSSSKRPSECNEPLAIYFGIKAKKPSDTIKKRRDYLKLCPSSNANSGMDSLTEAIARQEMRCDANSLNNIIDQRSGGGSCKDGGCGIEFKRTTASMPGYCDLLINHEYTVIDKPKYVCNGEWYSVQDWNRGYKYIYNSNGDVVGQTPVKRTCWVD
SIO_010081: IPMB12_RS11950
subclass of: SO_0000673
so part of: IPMB12_RS11950
location: complement(3399..4016)
location: region:3399-4016:-1
so has part: feature:3399-4016:-1:exon

WP_166917810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3399-4016:-1:exon

IPMB12_RS11955
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: trbL
locus tag: IPMB12_RS11955
old locus tag: IPMB12_11955
so part of: sequence
location: complement(4013..5320)
location: region:4013-5320:-1
so has part: feature:4013-5320:-1:exon
subclass of: SO_0000010

position:4013:-1
position: 4013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5320:-1
position: 5320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4013-5320:-1:exon

IPMB12_RS11955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: trbL
locus tag: IPMB12_RS11955
old locus tag: IPMB12_11955
inference: COORDINATES: protein motif:HMM:TIGR02783.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MKRFTYLFPLLFLMLSNSAFAAINNKDILDNVLEKYRAVASTWQGVIMSNALWLFWCLVAISMVWTFAQLILKQADFGEFFGELIRFMMFTGFYLWILQNAPEIGSSIIKSMGQLAAKAAGISDTPSPSSIVDIGFDIFNQVANQTSVWSPVDSAMGMILALIILVIIALLAINMLLLLITSWVLLYAGIFFLGFGGSKWTSDMAINYYKTLLGIAIQIFTMVLLIGIGKSIVDQYYTNMSDSIIFSELAVMFIVALTLLLLVNKLPPLMAGIITGASVGGQGIGSFASGAVLGAAATTAAGFGVASQLVTSGAANAGGGAKAIMEAFRSASGESSEGSLSGDAGSGSSSGMEGSLSSGSGDSDTPLSSAMGDDSSSGSIVSSGDRSFAAAVSDGIKNLATGVKDTAKDAMNARINQTVGGQVAEKIKSNREDKL
SIO_010081: IPMB12_RS11955
subclass of: SO_0000673
so part of: IPMB12_RS11955
location: complement(4013..5320)
location: region:4013-5320:-1
so has part: feature:4013-5320:-1:exon

WP_166917811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4013-5320:-1:exon

IPMB12_RS11960
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: trbJ
locus tag: IPMB12_RS11960
old locus tag: IPMB12_11960
so part of: sequence
location: complement(5320..6081)
location: region:5320-6081:-1
so has part: feature:5320-6081:-1:exon
subclass of: SO_0000010

position:6081:-1
position: 6081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5320-6081:-1:exon

IPMB12_RS11960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: trbJ
locus tag: IPMB12_RS11960
old locus tag: IPMB12_11960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020433685.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKNKITKLVLASFLALNMNVSLAGIPVADGLNLGQNIMNVMEAINQTLKQIEEYETQLQQYENQLKNSVGPAVQIWDKANETMNNLNAAMSKLEQYKRQIGDIDSYLNKFQDVKYYQTAPCLSTGKCTAEDIERLNEASAFSAGAVKVSNDAALSTINLQQKSLMADAKQLERLQGAVQGADGQMAALQYSNQLAGNQANQLLQMRALLVAQHNAVITKQAADNDKTAQEAAAIKSVRSGAFVKSTNKSGMLH
SIO_010081: IPMB12_RS11960
subclass of: SO_0000673
so part of: IPMB12_RS11960
location: complement(5320..6081)
location: region:5320-6081:-1
so has part: feature:5320-6081:-1:exon

WP_166917812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5320-6081:-1:exon

IPMB12_RS11965
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11965
old locus tag: IPMB12_11965
so part of: sequence
location: complement(6098..7459)
location: region:6098-7459:-1
so has part: feature:6098-7459:-1:exon
subclass of: SO_0000010

position:6098:-1
position: 6098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7459:-1
position: 7459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6098-7459:-1:exon

IPMB12_RS11965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11965
old locus tag: IPMB12_11965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114050.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbI
translation: MTDKNDVLSPDTTAKGGKVGTRRVNNKPMLIVGGVLLAFLLIMIVIASEKANQSNVAQSETPVVMSNNSNSFAQELVSSQNGIIPAELPPQKPMDLNDIVAPGEVKPITIVRPDNLDLPPIPPNQNLGQSQPDPNFERIQMAKMQLFEQSLRSKTAVNMIAPVSSGSVNYGSFSSAQNRDDMLAQIAAVRQKINANSSGASGDITEQYKQRMAMMQNSGLLDSVTSTSTAVGSGRISSGTGGASNKNKWKLDAEVEPPSSPYEIRTGFIIPGTLISGINSELPGQISAQVSQNVYDTATGRHLLIPQGARLNGTYSSEVVFGQARVMVAWERVIFPDGKALDITSMPGTDSGGYAGFNDKVNNHYMRIFGSAILLSGITAGISYSQDQHSSDDKSASGALSEALGQQLGQTTMQLVAKNMNIAPTLEIRPGYRFNIVVTKDMTFTKPYKSFDY
SIO_010081: IPMB12_RS11965
subclass of: SO_0000673
so part of: IPMB12_RS11965
location: complement(6098..7459)
location: region:6098-7459:-1
so has part: feature:6098-7459:-1:exon

WP_166917838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6098-7459:-1:exon

IPMB12_RS11970
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11970
old locus tag: IPMB12_11970
so part of: sequence
location: complement(7459..7923)
location: region:7459-7923:-1
so has part: feature:7459-7923:-1:exon
subclass of: SO_0000010

position:7923:-1
position: 7923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7459-7923:-1:exon

IPMB12_RS11970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11970
old locus tag: IPMB12_11970
inference: COORDINATES: protein motif:HMM:NF018934.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLFLILLMSIVLSGCVSSAKYGNFSAETLSNEVNIAFADNAFAQLSALYAPGKTRFNLTHQFSDLFGSHLSDQLQKAGYALSVPVADKDKTPEKAPEFNADTHSLAYVIDETDANIYRVTLFVDGLPITKGFLIQDGKVVSLGFWTKQDRGQ
SIO_010081: IPMB12_RS11970
subclass of: SO_0000673
so part of: IPMB12_RS11970
location: complement(7459..7923)
location: region:7459-7923:-1
so has part: feature:7459-7923:-1:exon

WP_166917813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7459-7923:-1:exon

IPMB12_RS11975
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: trbG
locus tag: IPMB12_RS11975
old locus tag: IPMB12_11975
so part of: sequence
location: complement(7927..8811)
location: region:7927-8811:-1
so has part: feature:7927-8811:-1:exon
subclass of: SO_0000010

position:7927:-1
position: 7927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8811:-1
position: 8811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7927-8811:-1:exon

IPMB12_RS11975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: trbG
locus tag: IPMB12_RS11975
old locus tag: IPMB12_11975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000753228.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbG
translation: MKKILLSLFIFYSLSAAASSTDKLADLYFSNADPKLTTQEKAAIAIAEKWAGDVSSGMKPVRGADGSIKYLFGAQQVSIVCAVMRVCDLALQPGELVNGLHVGDSGRWIIEPAVSGSGAGEVIHVLIKPFDVGLETTLFIATNRRTYNINLKSHRTQYMPAVSFTYPEEAIAKWDLIKSQTTKQFEDNIIPQTGEYLGNLDFKYSISGSASWKPVRVYNDGVKTIIQMPSSMANKEAPTLLVIRQNKGLFNKDETVMVNYRLQGDRYIVDAIFDKAILITGVGSGQSKITITKE
SIO_010081: IPMB12_RS11975
subclass of: SO_0000673
so part of: IPMB12_RS11975
location: complement(7927..8811)
location: region:7927-8811:-1
so has part: feature:7927-8811:-1:exon

WP_166917814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7927-8811:-1:exon

IPMB12_RS11980
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11980
old locus tag: IPMB12_11980
so part of: sequence
location: complement(8822..9574)
location: region:8822-9574:-1
so has part: feature:8822-9574:-1:exon
subclass of: SO_0000010

position:8822:-1
position: 8822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9574:-1
position: 9574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8822-9574:-1:exon

IPMB12_RS11980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11980
old locus tag: IPMB12_11980
inference: COORDINATES: protein motif:HMM:NF016238.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB8/TrbF family protein
translation: MNLKSLFKKKEKVEHEHVSTSKGTGEDKEELNPYLNARRAWNSHCGSLMSSRLSWQVVGIIALLISLYAVYGIISIGSQSKFIPYIVEHNVSTGRVSGGQLAYPAERPEKIMFQAAVSDYIFYSRLVTADAAMQRKAVFKVYSMLTDTDPAFAKMNEWMRADGKTPFERAAKELVSIEIRSVLPQTADTWQIEWVETTRDRQGALVGTPFIMRALVTVYQAEPKSEKTLEDMNNNPVNIYVRDFSWSRLN
SIO_010081: IPMB12_RS11980
subclass of: SO_0000673
so part of: IPMB12_RS11980
location: complement(8822..9574)
location: region:8822-9574:-1
so has part: feature:8822-9574:-1:exon

WP_166917815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8822-9574:-1:exon

IPMB12_RS11985
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11985
old locus tag: IPMB12_11985
so part of: sequence
location: complement(9571..12147)
location: region:9571-12147:-1
so has part: feature:9571-12147:-1:exon
subclass of: SO_0000010

position:9571:-1
position: 9571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12147:-1
position: 12147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9571-12147:-1:exon

IPMB12_RS11985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11985
old locus tag: IPMB12_11985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020485800.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB4 family type IV secretion/conjugal transfer ATPase
translation: MNDSQLMQLITITVVLLSSLLVIILFLQAGKSIAANKLIKHRSKSEGFADLLNYGSVIDPGIILNKNGSLMMAFLYQGDDNASATVKQRENVAFRVNQTLSKLGNGWMVHVDAVRRPANKYSTPEESDFPDQICAGIDEERRRFFNGLDEMYEGYFVLTITYFPPLLAQRKFVEMMFDDDQMSLSKTQHGQEILNTFKRECRNIESNLSSVLKIQRLMPHEKVNEDGSKAIHDDFLRWLQFCITGDIHPVILPNNGMYLDKVIGGKEFYTGVVPKIGNKFIQVVAIDGYPLDSHPGILSALAEQSCEYRWSNRFIFMDRHEAIDHLNKFRKKWRQKVRGFFDQIFNTGKDKVNKDAVAMVIDAEDAIAEVESGLVAEGYHTSVIILMDAERARLEHSAEVISKTINRLGFNARVETINTVDAYLGSLPGHGVENVRRPLIHTLNLTHFLPTSSIWSGKDKAPCPYYPKNSPAVAHVVTSGSTPFRLNTHVGDLGHTMMFGPTGAGKSVHLAFLAAQFRRYKGMSIYAFDKGRSLYALAAGIRAKTNGKSGLHFDIASDDNKLAFCPLQYLSSRSYRAWAADWIDTILALNGLTTSASQRNGINDALVSMSENGGKTLTDFTHAIQDNAIREALQQYTVDGSMGYLLDAEQDGLELSDFTVFEIENLMNLDDRYALPVLLYLFKRIEMSLTGQPCVLLLDEVWLLLGHPVFREKIKEWLKVLRKANAIVIMATQSLSDAENSGIIDVLVESTATKIFLPNSSANEEETAKLYKRMGLNSRQIDIISSAIPKRQYYFASSEGRRLYDLALGPLALSFVAASDKESINEIMRLESVYGENWVDEWLKKKNLDLNDYCKEAA
SIO_010081: IPMB12_RS11985
subclass of: SO_0000673
so part of: IPMB12_RS11985
location: complement(9571..12147)
location: region:9571-12147:-1
so has part: feature:9571-12147:-1:exon

WP_166917816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9571-12147:-1:exon

IPMB12_RS11990
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11990
old locus tag: IPMB12_11990
so part of: sequence
location: complement(12144..12455)
location: region:12144-12455:-1
so has part: feature:12144-12455:-1:exon
subclass of: SO_0000010

position:12144:-1
position: 12144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12455:-1
position: 12455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12144-12455:-1:exon

IPMB12_RS11990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11990
old locus tag: IPMB12_11990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbD
translation: MEIKSVPIRRVGNRDNLFLECDRELVMMAGLLSVALIFSAQDLKATIFGVLLWFFSVYVLRLMAKSDPKMRFVYLRHRKYQAYYAPYSSPFRENTTLQGNRYL
SIO_010081: IPMB12_RS11990
subclass of: SO_0000673
so part of: IPMB12_RS11990
location: complement(12144..12455)
location: region:12144-12455:-1
so has part: feature:12144-12455:-1:exon

WP_166917817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12144-12455:-1:exon

IPMB12_RS11995
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS11995
old locus tag: IPMB12_11995
so part of: sequence
location: complement(12465..12878)
location: region:12465-12878:-1
so has part: feature:12465-12878:-1:exon
subclass of: SO_0000010

position:12465:-1
position: 12465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12878:-1
position: 12878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12465-12878:-1:exon

IPMB12_RS11995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS11995
old locus tag: IPMB12_11995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114046.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MIYFSKTTVFEKDSIIFKLLCALFFYILLTQCAAASEGSGGGLPYEGWLGKLKDSLTGPVAFAVSIIGIVVAGSTLIFGGELNAFFKTLVYLILVMSFLVGANNLLSGFFGRGADLFEMQEDVIDFLKNVLRNIVNE
SIO_010081: IPMB12_RS11995
subclass of: SO_0000673
so part of: IPMB12_RS11995
location: complement(12465..12878)
location: region:12465-12878:-1
so has part: feature:12465-12878:-1:exon

WP_208293601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12465-12878:-1:exon

IPMB12_RS12000
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12000
old locus tag: IPMB12_12000
so part of: sequence
location: 13000..13557
location: region:13000-13557:1
so has part: feature:13000-13557:1:exon
subclass of: SO_0000010

position:13000:1
position: 13000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13557:1
position: 13557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13000-13557:1:exon

IPMB12_RS12000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12000
old locus tag: IPMB12_12000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004091417.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYARVSTNDQDLTLQIDALQKNGCDKIFTDKISGSKTQRPGLTEVLNFIREGDSLVVWKLDRLGRTMKGLIDLIEELNEKKIEFISLTDGIDTKGATGKFFFHVMAAFAEMERELNRERTLAGLEVARKAGKTGGRPKAMTTKKLKAAKKLLLDGMPPKDVAQSLGISLSTLYRYCPASDNY
SIO_010081: IPMB12_RS12000
subclass of: SO_0000673
so part of: IPMB12_RS12000
location: 13000..13557
location: region:13000-13557:1
so has part: feature:13000-13557:1:exon

WP_166917818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13000-13557:1:exon

IPMB12_RS12005
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12005
old locus tag: IPMB12_12005
so part of: sequence
location: 13592..13903
location: region:13592-13903:1
so has part: feature:13592-13903:1:exon
subclass of: SO_0000010

position:13592:1
position: 13592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13903:1
position: 13903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13592-13903:1:exon

IPMB12_RS12005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12005
old locus tag: IPMB12_12005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003381772.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MCAQNDFFRGIYIMNATNINTRIDAELKADATNILGACGLTMSTAIRIFLEQVVQTQGLPFDVKRTPSAKTARALKEANELEKTGSHRFDSINGMVEDMTSDK
SIO_010081: IPMB12_RS12005
subclass of: SO_0000673
so part of: IPMB12_RS12005
location: 13592..13903
location: region:13592-13903:1
so has part: feature:13592-13903:1:exon

WP_166917819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13592-13903:1:exon

IPMB12_RS12010
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12010
old locus tag: IPMB12_12010
so part of: sequence
location: 13893..14201
location: region:13893-14201:1
so has part: feature:13893-14201:1:exon
subclass of: SO_0000010

position:13893:1
position: 13893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14201:1
position: 14201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13893-14201:1:exon

IPMB12_RS12010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12010
old locus tag: IPMB12_12010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006706130.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
translation: MTNKKRANLPRRIEYTKEFSKSWNRYNKAGRRNMNDAIIIMQLLFANRTIPAEYNDHFLAGSEWDGAKELHIGGDFLLIYRIDEKQNLITFVDIGSHSELFG
SIO_010081: IPMB12_RS12010
subclass of: SO_0000673
so part of: IPMB12_RS12010
location: 13893..14201
location: region:13893-14201:1
so has part: feature:13893-14201:1:exon

WP_166917820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13893-14201:1:exon

IPMB12_RS12015
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12015
old locus tag: IPMB12_12015
so part of: sequence
location: complement(14306..17251)
location: region:14306-17251:-1
so has part: feature:14306-17251:-1:exon
subclass of: SO_0000010

position:14306:-1
position: 14306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17251:-1
position: 17251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14306-17251:-1:exon

IPMB12_RS12015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12015
old locus tag: IPMB12_12015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014579490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MMNNKKPFSDIVAEKIIQQLKEGAAPWQKPWTPGQNTLPMNPISGKRYKGINTLNLMTESSIKGYSDPRWLTYKQAASLGAQVRYGEQATAVQYWKFTELREQLDKDGKPVLDDEGKPVKLEVQLDKPKVFYAYVFNATQIDNMPPLPAREITWNPIERTESLLSGSGALFFHDQENKAFYSPVKDEIHLPLKSNFETADRYYATALHEFAHWTGATSRLNRDLAHPFGSEGYAKEELRAEIASMILGEELNIGHDPAQHVAYIDHWIRILENDPLEIFRAAADAEKIQNYVLSRELEINLQYEQDAKIENIVEYELSKDDKYSDLYRHLKKVAEEYDLKINVNYGEDCLYKIDYIGLDTPNYLITTEIYADGRASTCINDLIVPGEKPTSDIELSGKMLKEAITLAPGFEMNKRKRQHNLPAFTTIRADGDIKDTDRYVDAQEWYDRKKDPIFDLDRVKRNERYLIDKDDNRIMFESEINKRTQRTSSITYNNATNEYKLKEDELGEGTTIATKNIPLNIPFAEKETAKEIAGKLPDGLPAIQWDKTQKQWFARPGTDLDKLKPWLITVEVQQSKNLATERTILAIPYEQRAAVKQIAGKLENGQNAIEWDKENKVWIAKPGADLDKLKNWLPENVSSTSNALSPRQEFAEALESMGAILTGEHPIMDGQNHRIAVTGDANGAKAGFYKAFLDGHPAGYIKNNRTGSELKWKSKGYSLSDEEKAKLTAEAAIKLQERREQQERDYESSSVRVQNQLKNLLPVETLTPYLANKGIDVYPGLATDDKKSITYVPAYDVDGKQWTTQYIKEDGQKGFEKGSKKQGCFHVIGGQNELIKSPVIIISEGYATAASITKAAGFSTVAAFDSGNLKAVAMALHEKYPDKKIVIAGDDDRKLEESQNINPGRTKAVDAAKAVNGIAIFPIFAPEEEKTLTDFNDLAVKSSLGPEAIKRQIEGAIKNIKVEQIAKSNKQEKSKKNTLKL
SIO_010081: IPMB12_RS12015
subclass of: SO_0000673
so part of: IPMB12_RS12015
location: complement(14306..17251)
location: region:14306-17251:-1
so has part: feature:14306-17251:-1:exon

WP_228720426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14306-17251:-1:exon

IPMB12_RS12020
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12020
old locus tag: IPMB12_12020
so part of: sequence
location: complement(17241..17438)
location: region:17241-17438:-1
so has part: feature:17241-17438:-1:exon
subclass of: SO_0000010

position:17241:-1
position: 17241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17438:-1
position: 17438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17241-17438:-1:exon

IPMB12_RS12020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12020
old locus tag: IPMB12_12020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003454292.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITEKLEQSGIDEVVIEKLKDLSVPTLLIEFTPEEAERAGAFQEDALLIAEAEESAIDGLEGHNE
SIO_010081: IPMB12_RS12020
subclass of: SO_0000673
so part of: IPMB12_RS12020
location: complement(17241..17438)
location: region:17241-17438:-1
so has part: feature:17241-17438:-1:exon

WP_166917822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17241-17438:-1:exon

IPMB12_RS12025
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12025
old locus tag: IPMB12_12025
so part of: sequence
location: complement(17464..19485)
location: region:17464-19485:-1
so has part: feature:17464-19485:-1:exon
subclass of: SO_0000010

position:17464:-1
position: 17464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19485:-1
position: 19485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17464-19485:-1:exon

IPMB12_RS12025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12025
old locus tag: IPMB12_12025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114056.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA topoisomerase 3
translation: MRLFIAEKPSVAKAIAEVLGSTDKGNGYIVCGDDYVTWCFGHLLESAEPDHYLSDDVPKNENGKKKWREQDLPIVPDKWVKQPREDAKEQLANIGRLIKKASVIVNAGDPDREGQLLVDEVLDHFSNTSPVLRYWTNAADRTSVERELSALRNNADYISHGRAAAARDKADWLIGMNLSRAYTLKAIRGGSRTLLTVGRVQTPTLAMVVKRDRDIGSFKSIPHYSIGVTIKHEQGEFLANWKMKDEQPGQDEEGRLIDVSKVEDVIQQISNQSGTITVFDKTPKKKYHPKVYSLSDLILVASNKFGYKGEDVLNTCQSLYERHKLTSYPRTDNGYLPESQFSDAGTILAILKSINPSYSALIDKADIKIKSKTWDDEKTTAHHGIVPTLHKGDPTKLSEMEKNIYDLIIKSYIAQFYPVHEFLRTTVEVGIVDETFVAAGNIVTLNGWKDVYLNDQDLSAEDDDKEEQQFPLMKKGDSVTCIAPVKKSLKTKPPSSFTDGSLNNAMSNIYRFIEDPEHKKILKEEDGLGTEATRTTIVSELVRRGFLTYDGKKIISTKLGRELVDALPESVKSPVLTAIYERMLKGIAAGTFTEEEFLAKQVQYITDQVNKANEGSIKVGHIPKVSNLHKCDLCGKGLYKLAGKKPGSFWWQCSGAPECTQTYSDLNGRPRRK
SIO_010081: IPMB12_RS12025
subclass of: SO_0000673
so part of: IPMB12_RS12025
location: complement(17464..19485)
location: region:17464-19485:-1
so has part: feature:17464-19485:-1:exon

WP_166917823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17464-19485:-1:exon

IPMB12_RS12030
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: traF
locus tag: IPMB12_RS12030
old locus tag: IPMB12_12030
so part of: sequence
location: complement(19838..20371)
location: region:19838-20371:-1
so has part: feature:19838-20371:-1:exon
subclass of: SO_0000010

position:19838:-1
position: 19838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20371:-1
position: 20371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19838-20371:-1:exon

IPMB12_RS12030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: traF
locus tag: IPMB12_RS12030
old locus tag: IPMB12_12030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000086826.1
GO component: GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer signal peptidase TraF
translation: MMKIIKKIRSIIILILLAVSGILIIVYLAGYKVNTTKSIPIGIYQESSKTPDKYDYVLFCPPDIEIFREAKRRGYINTGICPDSYGYLMKKIMAKGGDIVTLTEQGVFVNAELLAFSTPLKTDSYGRELPTLRLNQILKPTEVLLMSDVSETSFDARYFGILESKQIKGVITPVLIF
SIO_010081: IPMB12_RS12030
subclass of: SO_0000673
so part of: IPMB12_RS12030
location: complement(19838..20371)
location: region:19838-20371:-1
so has part: feature:19838-20371:-1:exon

WP_166917824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19838-20371:-1:exon

IPMB12_RS12035
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12035
old locus tag: IPMB12_12035
so part of: sequence
location: complement(20374..22266)
location: region:20374-22266:-1
so has part: feature:20374-22266:-1:exon
subclass of: SO_0000010

position:20374:-1
position: 20374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22266:-1
position: 22266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20374-22266:-1:exon

IPMB12_RS12035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12035
old locus tag: IPMB12_12035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011544437.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MAKNLNNHVGPQRTKKKKNNVLLPSMVALSVTMGLQTSTQLFAHKFNYHPALGDNFHGIYSPLSIIDWGYRWGEQYQNIFYEATAPGIILSSLGMLGISVTSVILSNSSKSNEYLHGSARWATKKDIQAAGLLPRDGFFKKLLKPDKAEGVYVGAWIDDKGNFHYLRHNGPEHILTYAPTRSGKGVGLVIPTLLSWLESAVITDLKGELWALTAGWRQKYAKNKVLKFEPAALLGSVHWNALDEIRINTEYEVGDVQNLATLLVDPDGKGLVDHWQKTSQSLFVGLILHLLYKSQIEGTTASLSTLDGILANPEESNSELWQDMVSYPHLGDKGTHPVVAASARDMLDRAEEELASIVSTTKSYLALYRDPVVANNVSKSDFKIKDLMNHDSPISLYIVTQPNDKARLRPLVRIMLNMIIRLLADKMEFVKGRSKKLYKHRLLGMIDEFPSLGKLEILQESLAFLAGYGMKFYLICQDINQLKSEKTGYGKDETITSNCHIQNAYPPNRIETAEHLSKSTGITTVIKENITTSGKRAGLFHTGVSRHIQEVQRPLLTADECLRMPGPVKNANGEIEEAGDMIVYVAGYPAIYGKQPLFFQDPVFLARSQVDMPLTSDILRQVKPANQIRI
SIO_010081: IPMB12_RS12035
subclass of: SO_0000673
so part of: IPMB12_RS12035
location: complement(20374..22266)
location: region:20374-22266:-1
so has part: feature:20374-22266:-1:exon

WP_166917825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20374-22266:-1:exon

IPMB12_RS12040
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12040
old locus tag: IPMB12_12040
so part of: sequence
location: complement(22267..24456)
location: region:22267-24456:-1
so has part: feature:22267-24456:-1:exon
subclass of: SO_0000010

position:22267:-1
position: 22267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24456:-1
position: 24456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22267-24456:-1:exon

IPMB12_RS12040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12040
old locus tag: IPMB12_12040
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MITKKVDMKNASKSSFSRLVDYISDSQAKENRVAEISITNCNSNSVEWAKIEIEATQKLNTRAVSDKTYHLLISFRPGEQPSLETLKAIESEICKSIGYEEHQRISVIHNDTDDLHIHIAINKIHPEKLTLHEPYNDYYTRDQMCVYLEEKYNLEKDNHQSKKSKGQSNANDMERIAGIESLITYIKRECDFELVSTWQELHKNLNEKGLDIKLKGNGLIIEDIKTGLTTKASSIGYSKSKLETQLGIFTPNKEPIKAVKNYRRNPVSYLDSRAIYSKYLSEKKNNRDNNSKIYKELRAKRDRLIEEAKKRAKLKREVLKLTKSNPFKKNLYSSINATLLKDIERAKGNYQQEILAAKIIKNISWLDWLKKEAQQTGDKNVLALLRNRTESDNTTHHSNSFSSKYNADEKIVPGARIDTVTKKGNVVYRVANSTIIDDGKKLTVSNGVTSNGLEAAILMAQYRYGNKLALSGTDDFKRKVIELVVKKGIKVTFNDPIIEKYRQNLETQNDRQQRHRSGTTVNRFTRERSGERNTSTARTRTRETKFKRTALSGTINIRRNTGIPITGRSNTVRSLSELSMDSITQRTEVLLSRNAGNDLEERGTRDTSSMRRPVSGTRIFGGIISDDAILAAKKYIEERNSKSNKIFDIKKHIHYNELNLGGTSKTVSYSGMRYINNNALALLKTGDDIIVVIPVSKAIETKLRKCAIGDSITITKGGIKVTSTKKVKR
SIO_010081: IPMB12_RS12040
subclass of: SO_0000673
so part of: IPMB12_RS12040
location: complement(22267..24456)
location: region:22267-24456:-1
so has part: feature:22267-24456:-1:exon

WP_166917826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22267-24456:-1:exon

IPMB12_RS12045
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: csrA
locus tag: IPMB12_RS12045
old locus tag: IPMB12_12045
so part of: sequence
location: complement(24446..24634)
location: region:24446-24634:-1
so has part: feature:24446-24634:-1:exon
subclass of: SO_0000010

position:24446:-1
position: 24446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24634:-1
position: 24634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24446-24634:-1:exon

IPMB12_RS12045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: csrA
locus tag: IPMB12_RS12045
old locus tag: IPMB12_12045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011978708.1
GO function: GO:0003723 - RNA binding [Evidence IEA]
GO process: GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbon storage regulator CsrA
translation: MLVLTRFIDQKIIIDSDIKITVLNVDDKSNKVWIGIKAPKSVSVHREEVYKRIQEAQQGHDH
SIO_010081: IPMB12_RS12045
subclass of: SO_0000673
so part of: IPMB12_RS12045
location: complement(24446..24634)
location: region:24446-24634:-1
so has part: feature:24446-24634:-1:exon

WP_166917827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24446-24634:-1:exon

IPMB12_RS12050
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12050
old locus tag: IPMB12_12050
so part of: sequence
location: complement(24639..25118)
location: region:24639-25118:-1
so has part: feature:24639-25118:-1:exon
subclass of: SO_0000010

position:24639:-1
position: 24639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25118:-1
position: 25118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24639-25118:-1:exon

IPMB12_RS12050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12050
old locus tag: IPMB12_12050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEYRNLESANDDSDIIDNILNKIYEKAFIRQKKLNSSERLFLGIVSVLAISSFIFAIFISNLFTWVISGGIFVYLSIMAFQPTFTVEDVMKSMASNEMVSDSDLQELSKTSDELKSELINLVNSDNFNFTYRELIILKSEINSWKRKQEFRDSLKIDKE
SIO_010081: IPMB12_RS12050
subclass of: SO_0000673
so part of: IPMB12_RS12050
location: complement(24639..25118)
location: region:24639-25118:-1
so has part: feature:24639-25118:-1:exon

WP_166917828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24639-25118:-1:exon

IPMB12_RS12055
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12055
old locus tag: IPMB12_12055
so part of: sequence
location: complement(25147..25494)
location: region:25147-25494:-1
so has part: feature:25147-25494:-1:exon
subclass of: SO_0000010

position:25147:-1
position: 25147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25494:-1
position: 25494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25147-25494:-1:exon

IPMB12_RS12055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12055
old locus tag: IPMB12_12055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbJ
translation: MKKSINARRNTTPIKVWVFPDEKEIITNNAKQHGLKNSAFLRSLGLNIVVNGVIDQQAVIDIVKVNADLGRLGGLLKLWLTKDEKLKSWDKDSIEKLLDEISRTQELLYQKVSKF
SIO_010081: IPMB12_RS12055
subclass of: SO_0000673
so part of: IPMB12_RS12055
location: complement(25147..25494)
location: region:25147-25494:-1
so has part: feature:25147-25494:-1:exon

WP_166917829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25147-25494:-1:exon

IPMB12_RS12060
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12060
old locus tag: IPMB12_12060
so part of: sequence
location: 25813..26181
location: region:25813-26181:1
so has part: feature:25813-26181:1:exon
subclass of: SO_0000010

position:25813:1
position: 25813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26181:1
position: 26181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25813-26181:1:exon

IPMB12_RS12060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12060
old locus tag: IPMB12_12060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017166882.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraK family protein
translation: MTKNLSERIAERIRNRKPTRNAKNRADFLIYKEDIKQAIADGWSVKIIWETLSEEQKISVSYAAFNNYVNKLINNAGKNKVTNPAEKELIKSPVPASEVTKKAISNTSGFSFNAKPDTDSLI
SIO_010081: IPMB12_RS12060
subclass of: SO_0000673
so part of: IPMB12_RS12060
location: 25813..26181
location: region:25813-26181:1
so has part: feature:25813-26181:1:exon

WP_166917830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25813-26181:1:exon

IPMB12_RS12065
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12065
old locus tag: IPMB12_12065
so part of: sequence
location: 26194..26916
location: region:26194-26916:1
so has part: feature:26194-26916:1:exon
subclass of: SO_0000010

position:26194:1
position: 26194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26916:1
position: 26916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26194-26916:1:exon

IPMB12_RS12065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12065
old locus tag: IPMB12_12065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010676180.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraL
translation: MKIHMILQGKGGCGKSYISSLIAQYILSKDKPLDCVDTDPVNSTFAGYKALNVRTLHLLDDDQINTRNLDTLIEWIVSADTDMVIDNGAATFVPLAHYIITNGIADLLAEMGHELIIHTVIAGGQALVDTINGFAQLAKQLPDDISFVVWLNEFYGKIIYQNKTFEEMKAYKEVKNRISSILTLPQVKEETYGLDIEEMLKLRKTFDEAINDPSLSIMTRQRLKIYRTNMFNQLDLAAVI
SIO_010081: IPMB12_RS12065
subclass of: SO_0000673
so part of: IPMB12_RS12065
location: 26194..26916
location: region:26194-26916:1
so has part: feature:26194-26916:1:exon

WP_228720425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26194-26916:1:exon

IPMB12_RS12070
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12070
old locus tag: IPMB12_12070
so part of: sequence
location: 26913..27341
location: region:26913-27341:1
so has part: feature:26913-27341:1:exon
subclass of: SO_0000010

position:26913:1
position: 26913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27341:1
position: 27341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26913-27341:1:exon

IPMB12_RS12070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12070
old locus tag: IPMB12_12070
inference: COORDINATES: protein motif:HMM:NF023087.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraM
translation: MRDKQQELIELIARKNNVLIGSDDPILMLLTANEFIITENTKALSEALSGYSSKIEVISSQWDSLASKKAEKILNASLNASKQVLNEHLEESASKIKALISSEILAAKIEIEREKKRIGLMSLINTLSALLIFVSVIVYLVS
SIO_010081: IPMB12_RS12070
subclass of: SO_0000673
so part of: IPMB12_RS12070
location: 26913..27341
location: region:26913-27341:1
so has part: feature:26913-27341:1:exon

WP_166917831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26913-27341:1:exon

IPMB12_RS12075
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12075
old locus tag: IPMB12_12075
so part of: sequence
location: complement(27385..27588)
location: region:27385-27588:-1
so has part: feature:27385-27588:-1:exon
subclass of: SO_0000010

position:27385:-1
position: 27385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27588:-1
position: 27588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27385-27588:-1:exon

IPMB12_RS12075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12075
old locus tag: IPMB12_12075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNYDNHCYARVMELINNSIRTTRLDNWEGTERNEAYTFLSGYVRALSDFHLLTEGECYLLGQEMKKI
SIO_010081: IPMB12_RS12075
subclass of: SO_0000673
so part of: IPMB12_RS12075
location: complement(27385..27588)
location: region:27385-27588:-1
so has part: feature:27385-27588:-1:exon

WP_166917832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27385-27588:-1:exon

IPMB12_RS12080
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12080
old locus tag: IPMB12_12080
so part of: sequence
location: complement(27620..28621)
location: region:27620-28621:-1
so has part: feature:27620-28621:-1:exon
subclass of: SO_0000010

position:27620:-1
position: 27620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28621:-1
position: 28621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27620-28621:-1:exon

IPMB12_RS12080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12080
old locus tag: IPMB12_12080
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MGKDFLGGLKNVSSVLNNTNANNDDNDRIVELDLDLIERDPNQPRTVFNEEKLQNLADSISYIVPGTGKPRGVEQPITVRPNPDKPGHYILKYGERRYIASNMGKMKKIRATIDTTPFDEDDVEDSQMVENIQREDLSPIEIATWIGKKLKKGKKKGDLAKTLGKSNSFITQYAALLALPGAIANLFESGKCNDVTLLNDLSALHKKKPSEVDSWLSDESQEVNRNTYKLFKEFLDESGRDSGISDNESASSDEVFEDDTPDTKAKKESESNSKDSTKFSKAIVMVEHMGQPGRLVLSKRPSSEVMGWIKYDENGEEFEVELKQLEIVSIIEG
SIO_010081: IPMB12_RS12080
subclass of: SO_0000673
so part of: IPMB12_RS12080
location: complement(27620..28621)
location: region:27620-28621:-1
so has part: feature:27620-28621:-1:exon

WP_166917833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27620-28621:-1:exon

IPMB12_RS12085
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12085
old locus tag: IPMB12_12085
so part of: sequence
location: complement(28632..29438)
location: region:28632-29438:-1
so has part: feature:28632-29438:-1:exon
subclass of: SO_0000010

position:28632:-1
position: 28632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29438:-1
position: 29438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28632-29438:-1:exon

IPMB12_RS12085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12085
old locus tag: IPMB12_12085
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKSILFSTQKGGVGKTTCTVHGAYYFAERKKKVIAIDVDIQGDTSYSLSYFKAYNIKASDLFTKKITELPKKKVDLAELPPEMGINAELYAENITVIPADELLVDLDQLDLNEVATNFKSNIEFLSSEYDVCFIDSGAAVGHKIVAMMSVIDCLISPIELAKYSINGIERTVRTLSYFKNSINPKLEFLGILPFKVDFGKPRQKRNYEILVNEVPELLAPLKVHNRDAIGEALEEKIPVWRVKKSAARLANQEMKALYEYISEKMNIE
SIO_010081: IPMB12_RS12085
subclass of: SO_0000673
so part of: IPMB12_RS12085
location: complement(28632..29438)
location: region:28632-29438:-1
so has part: feature:28632-29438:-1:exon

WP_166917834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28632-29438:-1:exon

IPMB12_RS12090
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12090
old locus tag: IPMB12_12090
so part of: sequence
location: complement(29453..29740)
location: region:29453-29740:-1
so has part: feature:29453-29740:-1:exon
subclass of: SO_0000010

position:29453:-1
position: 29453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29740:-1
position: 29740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29453-29740:-1:exon

IPMB12_RS12090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12090
old locus tag: IPMB12_12090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008929989.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrfB-related DNA-binding protein
translation: MKKKLTEEQFNLAVKKARINEQTKMIAYEVLVKGTAQTHFVKLLGLSKGAISQAVSRVFNAYHDNVPAGYEKVTVILPKHKAFIVKQWDKTKKNT
SIO_010081: IPMB12_RS12090
subclass of: SO_0000673
so part of: IPMB12_RS12090
location: complement(29453..29740)
location: region:29453-29740:-1
so has part: feature:29453-29740:-1:exon

WP_166917835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29453-29740:-1:exon

IPMB12_RS12095
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
gene: trfA
locus tag: IPMB12_RS12095
old locus tag: IPMB12_12095
so part of: sequence
location: complement(30709..31527)
location: region:30709-31527:-1
so has part: feature:30709-31527:-1:exon
subclass of: SO_0000010

position:30709:-1
position: 30709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31527:-1
position: 31527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30709-31527:-1:exon

IPMB12_RS12095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
gene: trfA
locus tag: IPMB12_RS12095
old locus tag: IPMB12_12095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019842081.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
translation: MTNNSNDNDNENVISDQMSLSLFQVAPWNDEMRGIPNDYARSALFTVRNKRVKRTAILNQPIYSANKNVTITYTGVELRAEDDELVWQQVLEFAKRTVFGEWVEFTFYELCKEIGWPINGNYYAKAEDCLSRLQASAVRFTSNRPGLYKTDLESISFLDRFRVQNRGDKSKSRCQVKISKDMVNLFIGNHYSRISWLEYRELSPIARRMYDYFSTHKEPFPLALDSFKSICASDVKTLKKWREMTKKACKELEESKLVKAIWVDNDYIKCVR
SIO_010081: IPMB12_RS12095
subclass of: SO_0000673
so part of: IPMB12_RS12095
location: complement(30709..31527)
location: region:30709-31527:-1
so has part: feature:30709-31527:-1:exon

WP_166917836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30709-31527:-1:exon

IPMB12_RS12100
type: Gene
subclass of: SO_0000704
RO_0002162: 1635327
locus tag: IPMB12_RS12100
old locus tag: IPMB12_12100
so part of: sequence
location: 31772..32119
location: region:31772-32119:1
so has part: feature:31772-32119:1:exon
subclass of: SO_0000010

position:31772:1
position: 31772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32119:1
position: 32119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31772-32119:1:exon

IPMB12_RS12100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1635327
locus tag: IPMB12_RS12100
old locus tag: IPMB12_12100
inference: COORDINATES: protein motif:HMM:NF010465.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MYSEIFLFNLLKKLKDRNLNKAQLSELSGISPSFISELTNGRANPSLAMLEKIAVSLKTPLYEMLLPEEVKPEDLQYSRPESLPDGVVKITAILPAHKAFIVKKWEEETKKQRKK
SIO_010081: IPMB12_RS12100
subclass of: SO_0000673
so part of: IPMB12_RS12100
location: 31772..32119
location: region:31772-32119:1
so has part: feature:31772-32119:1:exon

WP_166917837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31772-32119:1:exon