Zophobihabitans entericus strain IPMB12 chromosome, complete genome.
Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Zophobihabitans.
Complete genome sequence of Orbus sp. IPMB12 (BCRC 80908)
Submitted (18-MAR-2020) Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Taipei 11529, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP050253.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria and source DNA available from BCRC 80908.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. v1.2.09\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 203.8x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/01/2022 02:25:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,414\nCDSs (total) :: 2,350\nGenes (coding) :: 2,327\nCDSs (with protein) :: 2,327\nGenes (RNA) :: 64\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 5\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 4 of 23\nPseudo Genes (incomplete) :: 21 of 23\nPseudo Genes (internal stop) :: 1 of 23\nPseudo Genes (multiple problems) :: 3 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Zophobihabitans entericus
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF000819.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF011501.0
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:TIGR01988.1
COORDINATES: protein motif:HMM:NF007148.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: protein motif:HMM:NF009222.0
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_005717037.1
GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: protein motif:HMM:NF009498.0
COORDINATES: similar to AA sequence:RefSeq:NP_312137.1
COORDINATES: protein motif:HMM:TIGR01843.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_140441271.1
COORDINATES: protein motif:HMM:NF018319.2
COORDINATES: protein motif:HMM:NF001299.0
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002351.0
GO:0032977 - membrane insertase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462741.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:TIGR00188.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004246509.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004717067.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:NF013429.2
hydroxypyruvate isomerase family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00168
Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00656.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_010257594.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]
tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
COORDINATES: similar to AA sequence:RefSeq:WP_016191584.1
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]; GO:0046854 - phosphatidylinositol phosphate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000690441.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: similar to AA sequence:RefSeq:WP_011303857.1
GO:0003824 - catalytic activity [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: protein motif:HMM:NF012382.2
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012340840.1
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:TIGR01414.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015474 - autotransporter activity [Evidence IEA]
GO:0046819 - protein secretion by the type V secretion system [Evidence IEA]
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00391
rtT sRNA, processed from tyrT transcript; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011148394.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011148389.1
COORDINATES: protein motif:HMM:NF024244.2
COORDINATES: similar to AA sequence:RefSeq:WP_009459601.1
COORDINATES: protein motif:HMM:NF025577.2
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: protein motif:HMM:NF012798.2
integrase arm-type DNA-binding domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_004723155.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001140.0
GO:0051075 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: similar to AA sequence:RefSeq:WP_001326497.1
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: similar to AA sequence:RefSeq:WP_003252139.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF016623.2
divergent polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF008644.1
COORDINATES: similar to AA sequence:RefSeq:WP_001231153.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006007 - glucose catabolic process [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF024813.2
COORDINATES: protein motif:HMM:NF008124.0
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009639.0
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: similar to AA sequence:RefSeq:WP_044173998.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00513
Trp leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF010079.0
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF007073.0
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
COORDINATES: similar to AA sequence:RefSeq:WP_001406682.1
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]; GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
COORDINATES: similar to AA sequence:RefSeq:WP_008171747.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012511.2
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018232.2
COORDINATES: similar to AA sequence:RefSeq:WP_015368927.1
COORDINATES: protein motif:HMM:NF024770.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017457364.1
COORDINATES: similar to AA sequence:RefSeq:WP_014885367.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03392.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03391.1
cysteine desulfurase sulfur acceptor subunit CsdE
COORDINATES: protein motif:HMM:NF008247.1
GO:0006970 - response to osmotic stress [Evidence IEA]
division/outer membrane stress-associated lipid-binding lipoprotein
COORDINATES: protein motif:HMM:NF024969.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009150.0
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016251.2
COORDINATES: protein motif:HMM:NF008734.0
GO:0008168 - methyltransferase activity [Evidence IEA]
23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM
COORDINATES: protein motif:HMM:TIGR01574.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: similar to AA sequence:RefSeq:WP_002389231.1
COORDINATES: similar to AA sequence:RefSeq:WP_000142877.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008060.0
rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001324714.1
COORDINATES: protein motif:HMM:NF003447.0
COORDINATES: similar to AA sequence:RefSeq:WP_001724523.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF025895.2
COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001076748.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_001033718.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000580402.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
envelope stress sensor histidine kinase CpxA
COORDINATES: similar to AA sequence:RefSeq:WP_000932331.1
GO:0008175 - tRNA methyltransferase activity [Evidence IEA]
tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
COORDINATES: protein motif:HMM:NF016424.2
COORDINATES: protein motif:HMM:NF008745.0
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010031.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01944.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
RnfABCDGE type electron transport complex subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_017460010.1
COORDINATES: protein motif:HMM:NF016137.2
COORDINATES: protein motif:HMM:NF013381.2
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006986.0
GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
GO:0000902 - cell morphogenesis [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
COORDINATES: similar to AA sequence:RefSeq:WP_004637163.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF003641.0
GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003458.0
GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF015686.2
COORDINATES: similar to AA sequence:RefSeq:WP_003251456.1
COORDINATES: similar to AA sequence:RefSeq:WP_017504874.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_003104661.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF008293.1
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010880012.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF004393.0
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051262 - protein tetramerization [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011915393.1
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF008349.0
GO:0009001 - serine O-acetyltransferase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000389818.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000818604.1
GO:0010974 - negative regulation of division septum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000976070.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00521.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: similar to AA sequence:RefSeq:WP_001295236.1
COORDINATES: similar to AA sequence:RefSeq:WP_001153620.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:YP_005229143.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004410410.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1
COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006232360.1
COORDINATES: similar to AA sequence:RefSeq:WP_004868351.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1
COORDINATES: similar to AA sequence:RefSeq:WP_012147215.1
COORDINATES: similar to AA sequence:RefSeq:WP_005319713.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005970258.1
COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1
COORDINATES: similar to AA sequence:RefSeq:WP_005599304.1
COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1
COORDINATES: similar to AA sequence:RefSeq:WP_014992365.1
COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1
COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1
COORDINATES: similar to AA sequence:RefSeq:WP_000644743.1
COORDINATES: similar to AA sequence:RefSeq:WP_017805229.1
COORDINATES: similar to AA sequence:RefSeq:WP_001742302.1
COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004924105.1
COORDINATES: similar to AA sequence:RefSeq:WP_007891652.1
COORDINATES: similar to AA sequence:RefSeq:WP_010304939.1
COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF016087.2
copper resistance protein NlpE N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: similar to AA sequence:RefSeq:WP_000004449.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF008149.0
GO:0003723 - RNA binding [Evidence IEA]; GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0001510 - RNA methylation [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
COORDINATES: protein motif:HMM:TIGR02722.1
penicillin-binding protein activator LpoB
COORDINATES: protein motif:HMM:NF015515.2
COORDINATES: protein motif:HMM:NF008322.0
GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]
serine-type D-Ala-D-Ala carboxypeptidase
COORDINATES: protein motif:HMM:TIGR01728.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF013933.2
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:TIGR00661.1
COORDINATES: similar to AA sequence:RefSeq:WP_020456510.1
GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000106882.1
COORDINATES: protein motif:HMM:TIGR00586.1
GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009538.1
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF018049.2
COORDINATES: similar to AA sequence:RefSeq:WP_011073684.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF023621.2
COORDINATES: protein motif:HMM:TIGR00966.2
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01129.1
COORDINATES: similar to AA sequence:RefSeq:WP_000007628.1
COORDINATES: protein motif:HMM:TIGR01770.1
COORDINATES: protein motif:HMM:TIGR01972.1
COORDINATES: protein motif:HMM:TIGR01974.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004922503.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF005162.0
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004203687.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: similar to AA sequence:RefSeq:WP_007114967.1
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007369914.1
COORDINATES: similar to AA sequence:RefSeq:WP_015960603.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: similar to AA sequence:RefSeq:WP_000345410.1
GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IEA]
GO:0015890 - nicotinamide mononucleotide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF007109.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009166 - nucleotide catabolic process [Evidence IEA]
bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
COORDINATES: protein motif:HMM:NF007896.0
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
nitrate/nitrite two-component system sensor histidine kinase NarX
COORDINATES: similar to AA sequence:RefSeq:WP_005126375.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
two-component system response regulator NarL
COORDINATES: protein motif:HMM:NF007922.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA]; GO:0051266 - sirohydrochlorin ferrochelatase activity [Evidence IEA]; GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008595.0
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000084813.1
COORDINATES: similar to AA sequence:RefSeq:WP_000049208.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_001740376.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00020.2
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010345169.1
SodA; manganese binding; only present under aerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000627995.1
nucleotide 5'-monophosphate nucleosidase PpnN
COORDINATES: similar to AA sequence:RefSeq:WP_000462687.1
aspartate/tyrosine/aromatic aminotransferase
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_020444568.1
COORDINATES: protein motif:HMM:NF007664.0
two-component system sensor histidine kinase QseC
COORDINATES: similar to AA sequence:RefSeq:WP_000002907.1
COORDINATES: protein motif:HMM:TIGR03904.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019692099.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase carboxyl transferase subunit alpha
COORDINATES: protein motif:HMM:NF004226.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003406857.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000814312.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012673.2
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010892400.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010744434.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003113781.1
COORDINATES: protein motif:HMM:TIGR03821.1
GO:0072581 - protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016655583.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006818411.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF008129.0
GO:0042597 - periplasmic space [Evidence IEA]
bifunctional protein-disulfide isomerase/oxidoreductase DsbC
COORDINATES: protein motif:HMM:NF008290.0
GO:0008409 - 5'-3' exonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: similar to AA sequence:RefSeq:WP_008843230.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_009392033.1
GO:0045900 - negative regulation of translational elongation [Evidence IEA]
energy-dependent translational throttle protein EttA
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_000963792.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000267001.1
GO:0008381 - mechanosensitive ion channel activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
large-conductance mechanosensitive channel protein MscL
COORDINATES: similar to AA sequence:RefSeq:WP_000183325.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: protein motif:HMM:TIGR00695.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011611.0
COORDINATES: protein motif:HMM:NF002794.0
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000077530.1
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: similar to AA sequence:RefSeq:YP_005224394.1
COORDINATES: protein motif:HMM:NF011049.0
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: protein motif:HMM:NF015284.2
L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF014664.2
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_003038086.1
COORDINATES: protein motif:HMM:NF008382.0
phosphoenolpyruvate-protein phosphotransferase PtsI
COORDINATES: similar to AA sequence:RefSeq:WP_015833547.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF001211.0
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008638.0
COORDINATES: protein motif:HMM:NF007024.0
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005132837.1
GO:0008899 - homoserine O-succinyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000290522.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]; GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000274583.1
COORDINATES: similar to AA sequence:RefSeq:WP_001174077.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:NF007787.0
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000161258.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
PTS fructose-like transporter subunit IIB
COORDINATES: protein motif:HMM:TIGR01774.1
COORDINATES: protein motif:HMM:NF007483.0
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
[formate-C-acetyltransferase]-activating enzyme
COORDINATES: protein motif:HMM:NF014753.2
COORDINATES: protein motif:HMM:TIGR02365.1
COORDINATES: protein motif:HMM:NF025359.2
COORDINATES: protein motif:HMM:NF018584.2
COORDINATES: protein motif:HMM:NF012599.2
COORDINATES: protein motif:HMM:NF014754.2
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF012579.2
BglG family transcription antiterminator
COORDINATES: protein motif:HMM:NF015568.2
COORDINATES: protein motif:HMM:NF014368.2
COORDINATES: similar to AA sequence:RefSeq:WP_003098580.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00215.1
GO:0008915 - lipid-A-disaccharide synthase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017521191.1
GO:0008780 - acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003377815.1
COORDINATES: protein motif:HMM:NF008150.0
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: protein motif:HMM:NF001237.0
GO:0016783 - sulfurtransferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF001238.0
COORDINATES: protein motif:HMM:NF003938.0
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0070402 - NADPH binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_003811796.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005312076.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00116.1
COORDINATES: similar to AA sequence:RefSeq:WP_003650626.1
COORDINATES: similar to AA sequence:RefSeq:WP_000114998.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF007919.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO:0002949 - tRNA threonylcarbamoyladenosine modification [Evidence IEA]
L-threonylcarbamoyladenylate synthase type 1 TsaC
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: similar to AA sequence:RefSeq:WP_001307333.1
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: similar to AA sequence:RefSeq:WP_009682953.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:TIGR00136.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_015966571.1
COORDINATES: protein motif:HMM:NF001458.0
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdenum cofactor guanylyltransferase MobA
COORDINATES: similar to AA sequence:RefSeq:WP_000907612.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
molybdopterin-guanine dinucleotide biosynthesis protein B
COORDINATES: similar to AA sequence:RefSeq:WP_013344882.1
GO:0070403 - NAD+ binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018271.2
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016448881.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004754423.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF001924.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000828351.1
LysR family transcriptional regulator ArgP
COORDINATES: protein motif:HMM:NF007941.0
COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001118476.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF012385.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma-54-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012491697.1
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_019885738.1
COORDINATES: protein motif:HMM:TIGR00410.1
COORDINATES: protein motif:HMM:NF024744.2
COORDINATES: similar to AA sequence:RefSeq:WP_007728348.1
COORDINATES: similar to AA sequence:RefSeq:WP_006784935.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03011.1
GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00150.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:NF013670.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF000948.0
GO:0032300 - mismatch repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:YP_005224716.1
COORDINATES: protein motif:HMM:NF008280.0
COORDINATES: protein motif:HMM:TIGR01933.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0045861 - negative regulation of proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01932.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690856.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012901.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002332.0
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
malonate decarboxylase holo-ACP synthase
COORDINATES: protein motif:HMM:NF037981.1
COORDINATES: protein motif:HMM:TIGR03134.1
GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]
biotin-independent malonate decarboxylase subunit gamma
COORDINATES: protein motif:HMM:TIGR03133.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0016831 - carboxy-lyase activity [Evidence IEA]
GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
biotin-independent malonate decarboxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004174181.1
GO:0015451 - decarboxylation-driven active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005686.0
COORDINATES: protein motif:HMM:TIGR03125.1
GO:0046917 - triphosphoribosyl-dephospho-CoA synthase activity [Evidence IEA]
GO:0019361 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process [Evidence IEA]
triphosphoribosyl-dephospho-CoA synthase CitG
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF014600.2
COORDINATES: similar to AA sequence:RefSeq:WP_000093081.1
bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
COORDINATES: protein motif:HMM:NF014689.2
manganese efflux pump MntP family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_253076.1
COORDINATES: protein motif:HMM:NF016102.2
COORDINATES: similar to AA sequence:RefSeq:WP_001693277.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: similar to AA sequence:RefSeq:WP_000108330.1
COORDINATES: protein motif:HMM:NF024706.2
COORDINATES: similar to AA sequence:RefSeq:WP_019454693.1
COORDINATES: protein motif:HMM:TIGR03074.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_001704217.1
COORDINATES: similar to AA sequence:RefSeq:WP_001684240.1
COORDINATES: protein motif:HMM:NF018275.2
COORDINATES: protein motif:HMM:NF004760.0
COORDINATES: similar to AA sequence:RefSeq:WP_005123373.1
ankyrin repeat domain-containing protein
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003098126.1
COORDINATES: protein motif:HMM:NF018352.2
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF016777.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007801.0
bifunctional glutathionylspermidine amidase/synthase
COORDINATES: protein motif:HMM:TIGR00156.1
YgiW/YdeI family stress tolerance OB fold protein
COORDINATES: protein motif:HMM:NF015047.2
GO:0018580 - nitronate monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013323.2
acyl CoA:acetate/3-ketoacid CoA transferase
COORDINATES: similar to AA sequence:RefSeq:WP_004148125.1
COORDINATES: protein motif:HMM:NF025885.2
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF015444.2
COORDINATES: similar to AA sequence:RefSeq:WP_003242898.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: protein motif:HMM:NF006667.0
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: protein motif:HMM:NF012424.2
dihydrolipoamide acetyltransferase family protein
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015411.2
GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
prephenate dehydrogenase/arogenate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF013539.2
COORDINATES: similar to AA sequence:RefSeq:WP_000428805.1
COORDINATES: protein motif:HMM:NF019736.2
COORDINATES: protein motif:HMM:NF004076.0
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF024304.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:TIGR01003.1
COORDINATES: protein motif:HMM:NF018924.2
COORDINATES: protein motif:HMM:NF033674.1
NirD/YgiW/YdeI family stress tolerance protein
COORDINATES: similar to AA sequence:RefSeq:WP_017899815.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002049.0
GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
COORDINATES: protein motif:HMM:TIGR00045.1
COORDINATES: similar to AA sequence:RefSeq:NP_312030.2
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0046487 - glyoxylate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF007849.0
GO:0008672 - 2-dehydro-3-deoxyglucarate aldolase activity [Evidence IEA]
GO:0019394 - glucarate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03247.1
GO:0008872 - glucarate dehydratase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: similar to AA sequence:RefSeq:WP_000599636.1
COORDINATES: protein motif:HMM:TIGR03248.1
GO:0008867 - galactarate dehydratase activity [Evidence IEA]
GO:0046392 - galactarate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003742263.1
COORDINATES: protein motif:HMM:NF016241.2
COORDINATES: similar to AA sequence:RefSeq:WP_004238605.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009695.0
GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003210966.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00571.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: protein motif:HMM:NF016895.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003456.0
COORDINATES: protein motif:HMM:NF008581.0
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF006830.0
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00693.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001188957.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:YP_005224483.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
4-hydroxy-3-polyprenylbenzoate decarboxylase
COORDINATES: protein motif:HMM:NF007927.0
glycine betaine/L-proline transporter ProP
COORDINATES: similar to AA sequence:RefSeq:WP_008212104.1
COORDINATES: similar to AA sequence:RefSeq:WP_005017241.1
COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1
COORDINATES: similar to AA sequence:RefSeq:WP_005341838.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:TIGR02386.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_000907081.1
COORDINATES: similar to AA sequence:RefSeq:WP_016506431.1
cAMP-activated global transcriptional regulator CRP
COORDINATES: similar to AA sequence:RefSeq:WP_005312081.1
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:NF008046.0
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008287.0
outer membrane protein assembly factor BamA
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: protein motif:HMM:NF002060.0
GO:0016410 - N-acyltransferase activity [Evidence IEA]
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010919829.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: similar to AA sequence:RefSeq:WP_016290038.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
ATP-dependent protease ATP-binding subunit ClpX
COORDINATES: protein motif:HMM:NF008053.0
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025010.2
SurA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00426.1
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF005957.0
GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00071.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00515.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:TIGR01499.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
bifunctional tetrahydrofolate synthase/dihydrofolate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_013346115.1
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036727.1
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta domain-containing protein
COORDINATES: protein motif:HMM:NF008648.0
GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008386.0
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_000007503.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019724743.1
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015855437.1
met regulon transcriptional regulator MetJ
COORDINATES: similar to AA sequence:RefSeq:WP_003148783.1
COORDINATES: protein motif:HMM:NF008147.0
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
outer membrane-stress sensor serine endopeptidase DegS
COORDINATES: protein motif:HMM:TIGR00104.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: similar to AA sequence:RefSeq:WP_002886926.1
COORDINATES: similar to AA sequence:RefSeq:WP_011149697.1
methionine ABC transporter substrate-binding lipoprotein MetQ
COORDINATES: protein motif:HMM:NF008049.0
methionine ABC transporter permease MetI
COORDINATES: similar to AA sequence:RefSeq:WP_000594016.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0048473 - D-methionine transport [Evidence IEA]
methionine ABC transporter ATP-binding protein MetN
COORDINATES: protein motif:HMM:NF006506.0
GO:0016791 - phosphatase activity [Evidence IEA]
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
COORDINATES: protein motif:HMM:NF022152.2
COORDINATES: protein motif:HMM:NF001934.0
COORDINATES: similar to AA sequence:RefSeq:WP_009393202.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008024.0
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00237.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00633.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000616554.1
COORDINATES: protein motif:HMM:NF008400.0
GO:0004106 - chorismate mutase activity [Evidence IEA]; GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0046417 - chorismate metabolic process [Evidence IEA]; GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
bifunctional chorismate mutase/prephenate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_000016907.1
COORDINATES: similar to AA sequence:RefSeq:NP_312305.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000187594.1
COORDINATES: protein motif:HMM:NF008371.0
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006044 - N-acetylglucosamine metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: protein motif:HMM:TIGR00502.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01998.1
GO:0015572 - N-acetylglucosamine transmembrane transporter activity [Evidence IEA]
N-acetylglucosamine-specific PTS transporter subunit IIBC
COORDINATES: protein motif:HMM:NF008631.0
GO:0016020 - membrane [Evidence IEA]; GO:0042597 - periplasmic space [Evidence IEA]
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO:0008933 - lytic transglycosylase activity [Evidence IEA]
GO:0000270 - peptidoglycan metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01321.1
COORDINATES: protein motif:HMM:NF012228.1
MDR efflux pump AcrAB transcriptional activator RobA
COORDINATES: similar to AA sequence:RefSeq:WP_009874494.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO:0051604 - protein maturation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012383.2
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004927153.1
COORDINATES: protein motif:HMM:NF003450.0
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
GO:0019538 - protein metabolic process [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002228183.1
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF021778.2
COORDINATES: protein motif:HMM:NF007942.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016242896.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00439.2
permease-like cell division protein FtsX
COORDINATES: similar to AA sequence:RefSeq:WP_004934337.1
GO:0000910 - cytokinesis [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_014038904.1
rRNA large subunit pseudouridine synthase E
COORDINATES: similar to AA sequence:RefSeq:WP_004812744.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]
Fe-S cluster assembly transcriptional regulator IscR
COORDINATES: similar to AA sequence:RefSeq:WP_001295373.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0044571 - [2Fe-2S] cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004751839.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016537756.1
iron-sulfur cluster assembly protein IscA
COORDINATES: protein motif:HMM:TIGR00714.1
COORDINATES: protein motif:HMM:NF003520.0
COORDINATES: similar to AA sequence:RefSeq:WP_006708467.1
COORDINATES: protein motif:HMM:NF009455.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
carbamoyl-phosphate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012053752.1
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005318430.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000154036.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015768.2
PTS glucitol/sorbitol transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_000148878.1
PTS glucitol/sorbitol transporter subunit IIB
COORDINATES: protein motif:HMM:TIGR00821.1
PTS glucitol/sorbitol transporter subunit IIC
COORDINATES: protein motif:HMM:NF018611.2
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF016114.2
COORDINATES: similar to AA sequence:RefSeq:WP_015962680.1
COORDINATES: similar to AA sequence:RefSeq:WP_014715324.1
ribosome-associated heat shock protein Hsp15
COORDINATES: similar to AA sequence:RefSeq:WP_005106333.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014833438.1
GO:0008150 - biological_process [Evidence IEA]
ribosome assembly RNA-binding protein YhbY
COORDINATES: protein motif:HMM:NF008390.0
GO:0016436 - rRNA (uridine) methyltransferase activity [Evidence IEA]
GO:0001510 - RNA methylation [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]
23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
COORDINATES: similar to AA sequence:RefSeq:WP_014578296.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF008625.0
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008139.0
GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004773235.1
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004246596.1
COORDINATES: similar to AA sequence:RefSeq:WP_016654736.1
COORDINATES: similar to AA sequence:RefSeq:WP_005342351.1
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004723422.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002555983.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010117196.1
COORDINATES: protein motif:HMM:NF001847.0
COORDINATES: protein motif:HMM:NF002988.0
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001295238.1
COORDINATES: protein motif:HMM:NF015142.2
COORDINATES: protein motif:HMM:TIGR00514.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010114736.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1
COORDINATES: protein motif:HMM:TIGR00219.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:NF016019.2
COORDINATES: similar to AA sequence:RefSeq:WP_004981336.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008006.0
GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000268419.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: protein motif:HMM:NF015692.2
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF008660.1
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: protein motif:HMM:NF014621.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002457.0
COORDINATES: similar to AA sequence:RefSeq:WP_006117633.1
COORDINATES: similar to AA sequence:RefSeq:WP_000111274.1
COORDINATES: protein motif:HMM:NF006628.0
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003432.0
COORDINATES: similar to AA sequence:RefSeq:WP_007116325.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02121.1
GO:0005298 - proline:sodium symporter activity [Evidence IEA]
GO:0015824 - proline transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000512096.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00687.1
GO:0008478 - pyridoxal kinase activity [Evidence IEA]
GO:0009443 - pyridoxal 5'-phosphate salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_017490183.1
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_010257545.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021492.2
COORDINATES: protein motif:HMM:NF008351.0
outer membrane protein assembly factor BamB
COORDINATES: similar to AA sequence:RefSeq:WP_016451292.1
COORDINATES: protein motif:HMM:NF018848.2
COORDINATES: protein motif:HMM:NF001379.0
GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257683.1
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017374784.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008121.0
COORDINATES: protein motif:HMM:NF008585.0
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_000075981.1
COORDINATES: protein motif:HMM:NF008774.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]
tRNA dihydrouridine(20/20a) synthase DusA
COORDINATES: protein motif:HMM:NF017079.2
COORDINATES: protein motif:HMM:NF012786.2
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: protein motif:HMM:NF012565.2
spore coat protein U domain-containing protein
COORDINATES: protein motif:HMM:NF001964.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011681.0
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011698.0
COORDINATES: similar to AA sequence:RefSeq:WP_000933250.1
COORDINATES: protein motif:HMM:NF024981.2
COORDINATES: similar to AA sequence:RefSeq:WP_015841369.1
fructose-1-phosphate/6-phosphogluconate phosphatase
COORDINATES: protein motif:HMM:NF004208.0
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011235429.1
COORDINATES: similar to AA sequence:RefSeq:WP_005414824.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002441512.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024644.2
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF009408.0
formate-dependent uric acid utilization protein AegA
COORDINATES: similar to AA sequence:RefSeq:WP_016448039.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_312886.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006686.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0022900 - electron transport chain [Evidence IEA]
fumarate reductase (quinol) flavoprotein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020882957.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF014366.2
part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014378.2
thiol:disulfide interchange protein DsbA/DsbL
COORDINATES: protein motif:HMM:NF008008.0
COORDINATES: protein motif:HMM:TIGR01474.1
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003441.0
GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsB
COORDINATES: similar to AA sequence:RefSeq:WP_008457442.1
COORDINATES: similar to AA sequence:RefSeq:WP_010847629.1
COORDINATES: protein motif:HMM:NF008291.0
COORDINATES: similar to AA sequence:RefSeq:WP_000195318.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01062.1
COORDINATES: protein motif:HMM:NF006948.0
GO:0051087 - chaperone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004146450.1
GO:0015379 - potassium:chloride symporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008316.0
menaquinone-dependent protoporphyrinogen IX dehydrogenase
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF024921.2
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF008140.0
COORDINATES: protein motif:HMM:TIGR01352.1
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008131.0
GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002477.0
COORDINATES: similar to AA sequence:RefSeq:WP_001399683.1
COORDINATES: protein motif:HMM:NF008350.0
GO:0036424 - L-phosphoserine phosphatase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008272.0
GO:0006865 - amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF008366.0
GO:0019867 - outer membrane [Evidence IEA]
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001296333.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
COORDINATES: protein motif:HMM:TIGR01093.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001313.0
GO:0050661 - NADP binding [Evidence IEA]; GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF010378.0
GO:0004022 - alcohol dehydrogenase (NAD+) activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006066 - alcohol metabolic process [Evidence IEA]; GO:0015976 - carbon utilization [Evidence IEA]
bifunctional acetaldehyde-CoA/alcohol dehydrogenase
COORDINATES: protein motif:HMM:NF024093.2
COORDINATES: similar to AA sequence:RefSeq:YP_005224494.1
COORDINATES: similar to AA sequence:RefSeq:WP_001392924.1
GO:0008428 - ribonuclease inhibitor activity [Evidence IEA]
GO:0051252 - regulation of RNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008807872.1
GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
1,4-dihydroxy-2-naphthoate polyprenyltransferase
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: similar to AA sequence:RefSeq:WP_000211045.1
COORDINATES: similar to AA sequence:RefSeq:WP_005280494.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:TIGR00964.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003270.1
COORDINATES: similar to AA sequence:RefSeq:WP_001742319.1
COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_000626422.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000450476.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF006702.0
COORDINATES: similar to AA sequence:RefSeq:WP_000019348.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020535.2
COORDINATES: similar to AA sequence:RefSeq:WP_004858820.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015299 - solute:proton antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000421815.1
COORDINATES: similar to AA sequence:RefSeq:WP_003087936.1
COORDINATES: similar to AA sequence:RefSeq:WP_000230462.1
COORDINATES: similar to AA sequence:RefSeq:WP_001128868.1
COORDINATES: protein motif:HMM:NF008074.0
GO:0008995 - ribonuclease E activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01055
molybdenum cofactor riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_000168188.1
COORDINATES: protein motif:HMM:NF004314.0
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002209354.1
GO:0019899 - enzyme binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF007003.0
GO:0004072 - aspartate kinase activity [Evidence IEA]; GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009067 - aspartate family amino acid biosynthetic process [Evidence IEA]
bifunctional aspartate kinase/homoserine dehydrogenase I
COORDINATES: protein motif:HMM:TIGR00191.1
GO:0004413 - homoserine kinase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: similar to AA sequence:RefSeq:WP_001222883.1
COORDINATES: protein motif:HMM:NF008161.0
COORDINATES: protein motif:HMM:NF008160.0
COORDINATES: protein motif:HMM:NF008246.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_000107012.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138904.1
YajQ family cyclic di-GMP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004751466.1
GO:0008666 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]
50S ribosomal protein L3 N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007909.0
COORDINATES: similar to AA sequence:RefSeq:WP_019077397.1
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF008292.0
GO:0008882 - [glutamate-ammonia-ligase] adenylyltransferase activity [Evidence IEA]
bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase
COORDINATES: protein motif:HMM:NF015956.2
COORDINATES: protein motif:HMM:NF007105.0
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
Fe(2+) transporter permease subunit FeoB
COORDINATES: protein motif:HMM:NF020581.2
COORDINATES: similar to AA sequence:RefSeq:WP_006878018.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008052.0
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: protein motif:HMM:TIGR03582.1
COORDINATES: similar to AA sequence:RefSeq:WP_010825058.1
COORDINATES: similar to AA sequence:RefSeq:YP_005224780.1
COORDINATES: similar to AA sequence:RefSeq:WP_002355709.1
COORDINATES: similar to AA sequence:RefSeq:WP_002288307.1
COORDINATES: protein motif:HMM:NF006689.0
amidohydrolase/deacetylase family metallohydrolase
COORDINATES: protein motif:HMM:TIGR01437.1
DgaE family pyridoxal phosphate-dependent ammonia lyase
COORDINATES: similar to AA sequence:RefSeq:WP_002407701.1
COORDINATES: protein motif:HMM:NF037816.2
COORDINATES: protein motif:HMM:NF036906.2
contact-dependent growth inhibition system immunity protein
COORDINATES: protein motif:HMM:NF008395.0
COORDINATES: similar to AA sequence:RefSeq:WP_011147057.1
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000288132.1
COORDINATES: similar to AA sequence:RefSeq:WP_000191343.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002442508.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013344908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012149092.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008289.0
GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013213.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000881652.1
bile acid:sodium symporter family protein
COORDINATES: protein motif:HMM:TIGR00711.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019456911.1
COORDINATES: protein motif:HMM:NF013188.2
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000065411.1
COORDINATES: similar to AA sequence:RefSeq:WP_003102929.1
trans-2-enoyl-CoA reductase family protein
COORDINATES: protein motif:HMM:NF004396.0
COORDINATES: protein motif:HMM:TIGR01695.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: protein motif:HMM:NF005369.0
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00678.1
COORDINATES: protein motif:HMM:NF015049.2
COORDINATES: protein motif:HMM:NF016218.2
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007116363.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_415798.2
stress response translation initiation inhibitor YciH
COORDINATES: protein motif:HMM:NF016203.2
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: protein motif:HMM:TIGR02152.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: similar to AA sequence:RefSeq:NP_310836.2
COORDINATES: protein motif:HMM:NF008087.0
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF002458.0
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004774237.1
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005124544.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002084.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000929443.1
COORDINATES: protein motif:HMM:NF011713.0
microcin C ABC transporter ATP-binding protein YejF
COORDINATES: protein motif:HMM:NF011596.0
COORDINATES: similar to AA sequence:RefSeq:WP_004753462.1
microcin C ABC transporter permease YejB
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:TIGR00667.1
GO:0008914 - leucyltransferase activity [Evidence IEA]
leucyl/phenylalanyl-tRNA--protein transferase
COORDINATES: protein motif:HMM:NF008364.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0034775 - glutathione transmembrane transport [Evidence IEA]
cysteine/glutathione ABC transporter ATP-binding protein/permease CydC
COORDINATES: protein motif:HMM:NF008379.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0042883 - cysteine transport [Evidence IEA]
cysteine/glutathione ABC transporter permease/ATP-binding protein CydD
COORDINATES: similar to AA sequence:RefSeq:WP_011347508.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_000762236.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_009315099.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016992.2
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: similar to AA sequence:RefSeq:WP_009309751.1
sugar/pyridoxal phosphate phosphatase YigL
COORDINATES: similar to AA sequence:RefSeq:WP_011912999.1
GO:0097163 - sulfur carrier activity [Evidence IEA]
GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01198.1
GO:0017057 - 6-phosphogluconolactonase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00871.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006537318.1
COORDINATES: protein motif:HMM:NF013934.2
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00013
COORDINATES: protein motif:HMM:NF017016.2
GO:0051301 - cell division [Evidence IEA]
COORDINATES: protein motif:HMM:NF003933.0
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF007877.0
COORDINATES: similar to AA sequence:RefSeq:WP_005125145.1
COORDINATES: similar to AA sequence:RefSeq:WP_004204384.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001707402.1
autotransporter assembly complex protein TamA
COORDINATES: protein motif:HMM:NF016260.2
translocation/assembly module TamB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020232907.1
COORDINATES: protein motif:HMM:TIGR00743.1
COORDINATES: protein motif:HMM:TIGR00249.1
GO:0101006 - protein histidine phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00609.1
COORDINATES: protein motif:HMM:TIGR00242.1
GO:0051302 - regulation of cell division [Evidence IEA]
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: similar to AA sequence:RefSeq:WP_015271715.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_000625658.1
COORDINATES: protein motif:HMM:NF011685.0
GO:0008658 - penicillin binding [Evidence IEA]; GO:0008955 - peptidoglycan glycosyltransferase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001123.0
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:TIGR01143.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0047480 - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0071555 - cell wall organization [Evidence IEA]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: similar to AA sequence:RefSeq:WP_005297383.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:NF008042.0
COORDINATES: protein motif:HMM:TIGR01133.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003654096.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000130056.1
COORDINATES: protein motif:HMM:NF015739.2
FtsQ-type POTRA domain-containing protein
COORDINATES: protein motif:HMM:NF007009.0
COORDINATES: similar to AA sequence:RefSeq:WP_010159870.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00325.1
GO:0008759 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity [Evidence IEA]
UDP-3-O-acyl-N-acetylglucosamine deacetylase
COORDINATES: protein motif:HMM:NF003009.0
GO:0002953 - 5'-deoxynucleotidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: protein motif:HMM:NF005085.0
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008938833.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03802.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0070906 - aspartate:alanine antiporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01788.1
GO:0004351 - glutamate decarboxylase activity [Evidence IEA]
GO:0006540 - glutamate decarboxylation to succinate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011212942.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001886477.1
zinc uptake transcriptional repressor Zur
COORDINATES: protein motif:HMM:NF002490.0
COORDINATES: protein motif:HMM:NF022072.2
type II toxin-antitoxin system RatA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010257694.1
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: similar to AA sequence:RefSeq:WP_003230727.1
GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021453.2
COORDINATES: protein motif:HMM:NF016246.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_086328890.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF017717.2
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF016724.2
NERD domain-containing protein/DEAD/DEAH box helicase
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF038324.1
COORDINATES: protein motif:HMM:NF012372.2
COORDINATES: similar to AA sequence:RefSeq:WP_000786005.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015376466.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF018262.2
GO:0060567 - negative regulation of termination of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01594.1
COORDINATES: protein motif:HMM:NF024929.2
COORDINATES: protein motif:HMM:NF027776.2
COORDINATES: protein motif:HMM:NF017982.2
COORDINATES: protein motif:HMM:NF024625.2
COORDINATES: protein motif:HMM:NF017726.2
COORDINATES: similar to AA sequence:RefSeq:WP_001152421.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001429645.1
COORDINATES: protein motif:HMM:NF018510.2
COORDINATES: protein motif:HMM:NF024939.2
COORDINATES: protein motif:HMM:NF019996.2
prophage tail fiber N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003686798.1
GO:0008199 - ferric iron binding [Evidence IEA]
GO:0006879 - cellular iron ion homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: similar to AA sequence:RefSeq:WP_012068493.1
COORDINATES: protein motif:HMM:NF007553.0
bifunctional glucose-1-phosphatase/inositol phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_020077854.1
tagatose-bisphosphate aldolase subunit GatZ
COORDINATES: protein motif:HMM:NF012548.2
COORDINATES: protein motif:HMM:NF015737.2
COORDINATES: similar to AA sequence:RefSeq:WP_001307281.1
tagatose bisphosphate family class II aldolase
COORDINATES: protein motif:HMM:TIGR00221.1
GO:0006040 - amino sugar metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF040761.1
PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_016292670.1
PTS system mannose/fructose/sorbose family transporter subunit IID
COORDINATES: protein motif:HMM:NF015566.2
PTS N-acetylgalactosamine transporter subunit IIC
COORDINATES: similar to AA sequence:RefSeq:WP_005210824.1
PTS N-acetylgalactosamine transporter subunit IIB
COORDINATES: protein motif:HMM:TIGR02815.1
COORDINATES: protein motif:HMM:NF040755.1
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: protein motif:HMM:NF015764.2
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF000722.0
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000130175.1
GO:0004801 - transaldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_026188.1
GO:0004802 - transketolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009566.0
COORDINATES: protein motif:HMM:NF013508.2
SpaA isopeptide-forming pilin-related protein
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF001808.0
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016999.2
COORDINATES: protein motif:HMM:NF007702.0
GO:0004362 - glutathione-disulfide reductase (NADPH) activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF038065.1
COORDINATES: protein motif:HMM:NF003742.0
COORDINATES: protein motif:HMM:NF005057.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005522810.1
TusE/DsrC/DsvC family sulfur relay protein
COORDINATES: similar to AA sequence:RefSeq:WP_013364976.1
COORDINATES: protein motif:HMM:NF013308.2
GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000488386.1
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF002155.0
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF001453.0
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: protein motif:HMM:NF009835.0
GO:0045127 - N-acetylglucosamine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02231.1
COORDINATES: protein motif:HMM:TIGR01447.1
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000804550.1
COORDINATES: protein motif:HMM:NF007592.0
COORDINATES: protein motif:HMM:NF009050.0
COORDINATES: protein motif:HMM:NF007696.0
COORDINATES: similar to AA sequence:RefSeq:WP_000573321.1
glucitol/sorbitol-specific PTS transporter subunit IIC
COORDINATES: protein motif:HMM:NF040887.1
DNA-binding transcriptional regulator YciT
COORDINATES: protein motif:HMM:NF004776.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0004362 - glutathione-disulfide reductase (NADPH) activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001300574.1
23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ
COORDINATES: protein motif:HMM:NF003421.0
SprT family zinc-dependent metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_018054574.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR01779.1
GO:0015420 - ABC-type vitamin B12 transporter activity [Evidence IEA]
GO:0015889 - cobalamin transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00067.1
GO:0008881 - glutamate racemase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017375441.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186339.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF007089.0
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
zinc ABC transporter permease subunit ZnuB
COORDINATES: protein motif:HMM:NF007090.0
GO:0015633 - ABC-type zinc transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006829 - zinc ion transport [Evidence IEA]
zinc ABC transporter ATP-binding protein ZnuC
COORDINATES: protein motif:HMM:NF007091.2
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein ZnuA
COORDINATES: protein motif:HMM:NF008652.0
COORDINATES: protein motif:HMM:NF006507.0
GO:0016746 - acyltransferase activity [Evidence IEA]
LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species; Derived by automated computational analysis using gene prediction method: Protein Homology.
lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
COORDINATES: protein motif:HMM:TIGR00230.1
GO:0000023 - maltose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF007061.0
GO:0009274 - peptidoglycan-based cell wall [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
bifunctional glycosyl transferase/transpeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_002255798.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF003672.0
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
phosphoribosylformylglycinamidine synthase
COORDINATES: similar to AA sequence:RefSeq:WP_001109196.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010588.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017373484.1
COORDINATES: protein motif:HMM:NF016854.2
TfoX/Sxy family DNA transformation protein
COORDINATES: protein motif:HMM:NF003419.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008073352.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006765.0
GO:0050661 - NADP binding [Evidence IEA]; GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
NADP-dependent phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF006732.0
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: protein motif:HMM:NF008335.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0043365 - [formate-C-acetyltransferase]-activating enzyme activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase-activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_000651584.1
GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014648810.1
COORDINATES: similar to AA sequence:RefSeq:WP_014038898.1
COORDINATES: similar to AA sequence:RefSeq:WP_001006427.1
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: similar to AA sequence:RefSeq:WP_000800512.1
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_017103962.1
COORDINATES: similar to AA sequence:RefSeq:WP_001298109.1
COORDINATES: protein motif:HMM:NF033855.1
GO:0016645 - oxidoreductase activity, acting on the CH-NH group of donors [Evidence IEA]
tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD
COORDINATES: similar to AA sequence:RefSeq:WP_017055313.1
1-acylglycerol-3-phosphate O-acyltransferase
COORDINATES: protein motif:HMM:NF008264.0
tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
COORDINATES: protein motif:HMM:NF010151.0
GO:0015293 - symporter activity [Evidence IEA]
GO:0032329 - serine transport [Evidence IEA]; GO:0015826 - threonine transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF008360.0
GO:0008712 - ADP-glyceromanno-heptose 6-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008162.0
GO:0016757 - glycosyltransferase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
ADP-heptose--LPS heptosyltransferase RfaF
COORDINATES: protein motif:HMM:NF008204.0
GO:0008920 - lipopolysaccharide heptosyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
lipopolysaccharide heptosyltransferase RfaC
COORDINATES: similar to AA sequence:RefSeq:WP_001125202.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_004220743.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008513.0
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
ferric ABC transporter ATP-binding protein
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: protein motif:HMM:TIGR00507.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005122768.1
GO:0019213 - deacetylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005122770.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_001575262.1
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001770.0
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008964.0
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008361.0
DNA-binding transcriptional regulator OxyR
COORDINATES: similar to AA sequence:RefSeq:YP_005224405.1
COORDINATES: protein motif:HMM:NF008712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018052525.1
COORDINATES: protein motif:HMM:NF019298.2
COORDINATES: protein motif:HMM:NF008414.0
penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000963851.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003084299.1
COORDINATES: protein motif:HMM:TIGR00218.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017886.2
COORDINATES: similar to AA sequence:RefSeq:WP_003229834.1
COORDINATES: similar to AA sequence:RefSeq:WP_009910688.1
PTS mannose/fructose/sorbose transporter subunit IIC
COORDINATES: protein motif:HMM:NF015769.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
mannose/fructose/sorbose PTS transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_001098806.1
COORDINATES: protein motif:HMM:TIGR00418.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010222415.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006708231.1
COORDINATES: similar to AA sequence:RefSeq:WP_009635878.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01859
Phe leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_000388219.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:TIGR00472.1
COORDINATES: similar to AA sequence:RefSeq:WP_006708235.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00522
PreQ1 riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR03139.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018242.2
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008406.0
GO:1990397 - queuosine salvage [Evidence IEA]
7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter
COORDINATES: protein motif:HMM:NF004489.0
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001465625.1
DNA-binding transcriptional regulator Fis
COORDINATES: similar to AA sequence:RefSeq:WP_014422716.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018076.2
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:TIGR02119.1
GO:0015498 - pantothenate:sodium symporter activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015887 - pantothenate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001749951.1
COORDINATES: similar to AA sequence:RefSeq:WP_002208785.1
COORDINATES: similar to AA sequence:RefSeq:WP_001520150.1
COORDINATES: similar to AA sequence:RefSeq:WP_000677460.1
COORDINATES: protein motif:HMM:TIGR00557.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:NF018682.2
four-carbon acid sugar kinase family protein
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF005574.0
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021903.2
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: protein motif:HMM:NF006771.0
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: similar to AA sequence:RefSeq:WP_010255928.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
glyoxalase/bleomycin resistance/extradiol dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001693358.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020804044.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006268 - DNA unwinding involved in DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000262172.1
GO:0047834 - D-threo-aldose 1-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000024872.1
COORDINATES: similar to AA sequence:RefSeq:WP_021241633.1
COORDINATES: protein motif:HMM:TIGR02205.1
GO:0000917 - division septum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF005932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF002602.0
COORDINATES: protein motif:HMM:NF025675.2
COORDINATES: protein motif:HMM:NF013522.2
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004754074.1
GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007975.0
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000876286.1
lipopolysaccharide assembly protein LapA domain-containing protein
COORDINATES: protein motif:HMM:NF008756.0
GO:0008653 - lipopolysaccharide metabolic process [Evidence IEA]
lipopolysaccharide assembly protein LapB
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: similar to AA sequence:RefSeq:WP_002213087.1
COORDINATES: protein motif:HMM:NF024436.2
COORDINATES: protein motif:HMM:NF003740.0
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF013882.2
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: similar to AA sequence:RefSeq:WP_001195240.1
COORDINATES: protein motif:HMM:NF025422.2
COORDINATES: protein motif:HMM:NF022182.2
COORDINATES: protein motif:HMM:NF008621.0
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0015417 - ABC-type polyamine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015846 - polyamine transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
putrescine ABC transporter ATP-binding subunit PotG
COORDINATES: protein motif:HMM:NF007963.0
putrescine ABC transporter permease PotH
COORDINATES: protein motif:HMM:NF003471.0
COORDINATES: similar to AA sequence:RefSeq:WP_000513593.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF009326.0
COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00928.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003246629.1
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004281.0
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: protein motif:HMM:NF007838.0
COORDINATES: protein motif:HMM:NF022073.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0047989 - hydroxybutyrate-dimer hydrolase activity [Evidence IEA]
GO:0019605 - butyrate metabolic process [Evidence IEA]
3-hydroxybutyrate oligomer hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000365756.1
COORDINATES: similar to AA sequence:RefSeq:WP_002855295.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00931.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04350.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005120526.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000275365.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000494484.1
COORDINATES: protein motif:HMM:NF008277.0
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017770.2
COORDINATES: similar to AA sequence:RefSeq:WP_001220671.1
COORDINATES: similar to AA sequence:RefSeq:WP_000212426.1
COORDINATES: protein motif:HMM:NF015549.2
COORDINATES: protein motif:HMM:NF017273.2
COORDINATES: similar to AA sequence:RefSeq:WP_007561126.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00540.1
COORDINATES: protein motif:HMM:NF016275.2
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:NF014641.2
COORDINATES: similar to AA sequence:RefSeq:WP_015585405.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006764.0
GO:0006188 - IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001246.0
high frequency lysogenization protein HflD
COORDINATES: similar to AA sequence:RefSeq:WP_005880185.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]; GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025073.2
COORDINATES: protein motif:HMM:NF012314.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012349.2
COORDINATES: similar to AA sequence:RefSeq:WP_008501806.1
GO:0090529 - cell septum assembly [Evidence IEA]; GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF022518.2
COORDINATES: protein motif:HMM:NF023407.2
GTPase/DUF3482 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005120307.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022743.2
COORDINATES: similar to AA sequence:RefSeq:WP_002318487.1
COORDINATES: similar to AA sequence:RefSeq:WP_002307075.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF006961.0
GO:0008828 - dATP diphosphatase activity [Evidence IEA]; GO:0019177 - dihydroneopterin triphosphate pyrophosphohydrolase activity [Evidence IEA]
GO:0046656 - folic acid biosynthetic process [Evidence IEA]
dihydroneopterin triphosphate diphosphatase
COORDINATES: protein motif:HMM:NF013340.2
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_005772098.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012606485.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:TIGR00084.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_001837006.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: similar to AA sequence:RefSeq:WP_000799888.1
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005133314.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008203.0
COORDINATES: similar to AA sequence:RefSeq:WP_000132874.1
COORDINATES: protein motif:HMM:NF008018.0
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
COORDINATES: protein motif:HMM:NF008743.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017434.2
COORDINATES: protein motif:HMM:NF025760.2
COORDINATES: protein motif:HMM:TIGR02291.1
COORDINATES: similar to AA sequence:RefSeq:WP_001259596.1
GO:0004620 - phospholipase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013572604.1
COORDINATES: protein motif:HMM:NF005942.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008844819.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_011104642.1
COORDINATES: protein motif:HMM:NF007821.0
COORDINATES: similar to AA sequence:RefSeq:WP_015960237.1
COORDINATES: protein motif:HMM:NF003838.0
GO:0015250 - water channel activity [Evidence IEA]
GO:0006833 - water transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF007092.0
GO:0005385 - zinc ion transmembrane transporter activity [Evidence IEA]
GO:0071577 - zinc ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF005829.0
COORDINATES: similar to AA sequence:RefSeq:WP_001394504.1
COORDINATES: similar to AA sequence:RefSeq:WP_017899323.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01667.1
COORDINATES: similar to AA sequence:RefSeq:WP_000108172.1
COORDINATES: similar to AA sequence:RefSeq:WP_004810665.1
GO:0016896 - exoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]; GO:0042780 - tRNA 3'-end processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF002677.0
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012632.2
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
pilus assembly protein N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016828.2
COORDINATES: protein motif:HMM:NF019428.2
TadE/TadG family type IV pilus assembly protein
COORDINATES: protein motif:HMM:NF028274.2
COORDINATES: protein motif:HMM:NF024792.2
pilus assembly protein TadG-related protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012077941.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001261764.1
GO:0004549 - tRNA-specific ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: similar to AA sequence:RefSeq:WP_005461131.1
COORDINATES: protein motif:HMM:TIGR00126.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015567.2
COORDINATES: protein motif:HMM:NF015570.2
COORDINATES: protein motif:HMM:NF003243.0
COORDINATES: protein motif:HMM:NF003466.1
COORDINATES: protein motif:HMM:NF014389.2
COORDINATES: similar to AA sequence:RefSeq:WP_000997795.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:TIGR01420.1
GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002336979.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019089.2
COORDINATES: protein motif:HMM:NF016132.2
COORDINATES: similar to AA sequence:RefSeq:WP_000095689.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258038.1
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000743900.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017984.2
winged helix DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF015355.2
2-hydroxycarboxylate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291004.1
COORDINATES: protein motif:HMM:NF008298.1
DcuS/MalK family sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_000885033.1
COORDINATES: protein motif:HMM:NF020416.2
COORDINATES: similar to AA sequence:RefSeq:WP_016628462.1
COORDINATES: protein motif:HMM:NF018630.2
COORDINATES: similar to AA sequence:RefSeq:WP_000212737.1
zinc ribbon domain-containing protein YjdM
COORDINATES: protein motif:HMM:NF024086.2
COORDINATES: protein motif:HMM:NF019632.2
ClbS/DfsB family four-helix bundle protein
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_001174940.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01125.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: protein motif:HMM:TIGR00698.1
COORDINATES: protein motif:HMM:NF011576.0
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008394.0
GO:0003724 - RNA helicase activity [Evidence IEA]
GO:0000027 - ribosomal large subunit assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF013986.2
acyl-CoA dehydratase activase-related protein
COORDINATES: protein motif:HMM:NF014798.2
COORDINATES: protein motif:HMM:NF012670.2
COORDINATES: similar to AA sequence:RefSeq:WP_002060133.1
COORDINATES: protein motif:HMM:NF008603.0
GO:0005507 - copper ion binding [Evidence IEA]
GO:0055070 - copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000637847.1
COORDINATES: protein motif:HMM:TIGR01893.1
COORDINATES: similar to AA sequence:RefSeq:NP_308292.1
GO:0000310 - xanthine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018234.2
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001221.0
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011078568.1
tRNA 5-hydroxyuridine modification protein YegQ
COORDINATES: protein motif:HMM:NF005478.0
COORDINATES: similar to AA sequence:RefSeq:WP_006582225.1
COORDINATES: similar to AA sequence:RefSeq:WP_012297382.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF013961.2
COORDINATES: similar to AA sequence:RefSeq:WP_002466625.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF000491.1
type A chloramphenicol O-acetyltransferase
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_000562370.1
COORDINATES: similar to AA sequence:RefSeq:WP_017391234.1
COORDINATES: protein motif:HMM:NF010309.0
aminoglycoside adenylyltransferase family protein
bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase
COORDINATES: protein motif:HMM:TIGR00157.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_014158169.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF013222.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:NF037716.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: similar to AA sequence:RefSeq:WP_001010696.1
COORDINATES: protein motif:HMM:TIGR03696.1
COORDINATES: protein motif:HMM:NF026883.2
polymorphic toxin type 8 domain-containing protein
COORDINATES: protein motif:HMM:NF022495.2
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF025451.2
COORDINATES: protein motif:HMM:NF026924.2
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: protein motif:HMM:TIGR01643.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025581.2
COORDINATES: protein motif:HMM:NF025298.2
COORDINATES: protein motif:HMM:NF016515.2
COORDINATES: similar to AA sequence:RefSeq:WP_019726349.1
COORDINATES: similar to AA sequence:RefSeq:WP_016445101.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012248360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804730.1
TIGR03756 family integrating conjugative element protein
COORDINATES: protein motif:HMM:NF019152.2
TIGR03757 family integrating conjugative element protein
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012639395.1
COORDINATES: similar to AA sequence:RefSeq:WP_003290235.1
TIGR03751 family conjugal transfer lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_003116808.1
TIGR03752 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_016451648.1
TIGR03749 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_008733860.1
TIGR03746 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_009459668.1
TIGR03750 family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008733863.1
TIGR03745 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_011633226.1
TIGR03758 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR01690.1
RAQPRD family integrative conjugative element protein
COORDINATES: protein motif:HMM:TIGR02913.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178083.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_032488541.1
GO:0003684 - damaged DNA binding [Evidence IEA]
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: protein motif:HMM:NF025805.2
COORDINATES: similar to AA sequence:RefSeq:WP_003050279.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018334.2
COORDINATES: similar to AA sequence:RefSeq:WP_005302441.1
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: protein motif:HMM:NF013100.2
transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_000743444.1
COORDINATES: similar to AA sequence:RefSeq:WP_016448826.1
COORDINATES: similar to AA sequence:RefSeq:WP_000070121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012133967.1
COORDINATES: protein motif:HMM:TIGR01386.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008733953.1
heavy metal response regulator transcription factor
COORDINATES: protein motif:HMM:TIGR02143.1
GO:0030697 - S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity [Evidence IEA]
tRNA (uridine(54)-C5)-methyltransferase TrmA
COORDINATES: similar to AA sequence:RefSeq:WP_005273077.1
COORDINATES: protein motif:HMM:NF008670.0
GO:0008933 - lytic transglycosylase activity [Evidence IEA]
membrane-bound lytic murein transglycosylase MltC
COORDINATES: similar to AA sequence:RefSeq:WP_012540558.1
GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008132.0
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007910.0
GO:0004106 - chorismate mutase activity [Evidence IEA]; GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0046417 - chorismate metabolic process [Evidence IEA]; GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
bifunctional chorismate mutase/prephenate dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_004104616.1
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_004878467.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005123118.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1
COORDINATES: similar to AA sequence:RefSeq:WP_017391359.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:NF008391.1
COORDINATES: protein motif:HMM:NF008642.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]
DEAD/DEAH family ATP-dependent RNA helicase
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF012730.2
COORDINATES: protein motif:HMM:NF005959.0
GO:0008779 - acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity [Evidence IEA]; GO:0008922 - long-chain fatty acid [acyl-carrier-protein] ligase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase
COORDINATES: similar to AA sequence:RefSeq:WP_015960269.1
COORDINATES: similar to AA sequence:RefSeq:WP_010945696.1
COORDINATES: similar to AA sequence:RefSeq:WP_015960083.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010691543.1
GO:0009019 - tRNA (guanine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_015478452.1
COORDINATES: protein motif:HMM:TIGR02073.1
COORDINATES: protein motif:HMM:NF036531.2
COORDINATES: similar to AA sequence:RefSeq:WP_000833723.1
COORDINATES: protein motif:HMM:NF015451.2
COORDINATES: similar to AA sequence:RefSeq:WP_001467780.1
COORDINATES: similar to AA sequence:RefSeq:YP_005224921.1
COORDINATES: similar to AA sequence:RefSeq:NP_313340.2
COORDINATES: protein motif:HMM:NF008677.0
two-component system response regulator BtsR
COORDINATES: similar to AA sequence:RefSeq:WP_015959722.1
COORDINATES: protein motif:HMM:TIGR00091.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: protein motif:HMM:NF004051.0
COORDINATES: protein motif:HMM:NF002992.0
COORDINATES: similar to AA sequence:RefSeq:WP_001739810.1
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000166270.1
COORDINATES: protein motif:HMM:NF008268.0
COORDINATES: protein motif:HMM:NF013109.2
COORDINATES: protein motif:HMM:NF002978.0
nicotinamide mononucleotide deamidase-related protein YfaY
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: protein motif:HMM:TIGR03916.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: protein motif:HMM:TIGR03915.1
TIGR03915 family putative DNA repair protein
COORDINATES: protein motif:HMM:NF008163.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008303.0
GO:0008728 - GTP diphosphokinase activity [Evidence IEA]; GO:0008893 - guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [Evidence IEA]
bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013511051.1
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:NF012832.2
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015827.2
COORDINATES: similar to AA sequence:RefSeq:WP_017055625.1
COORDINATES: similar to AA sequence:RefSeq:WP_172756218.1
COORDINATES: similar to AA sequence:RefSeq:WP_004895038.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004118405.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: protein motif:HMM:NF017893.2
COORDINATES: protein motif:HMM:NF007743.0
ribose operon transcriptional repressor RbsR
COORDINATES: protein motif:HMM:NF008353.0
GO:0006014 - D-ribose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF007936.0
ribose ABC transporter substrate-binding protein RbsB
COORDINATES: protein motif:HMM:NF007067.0
COORDINATES: protein motif:HMM:NF008030.0
ribose ABC transporter ATP-binding protein RbsA
COORDINATES: similar to AA sequence:RefSeq:WP_004107315.1
GO:0016872 - intramolecular lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013344026.1
Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF008180.0
miniconductance mechanosensitive channel MscM
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:TIGR00129.1
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_000913315.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_010331156.1
COORDINATES: similar to AA sequence:RefSeq:WP_007092097.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_003050054.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF007110.0
GO:0005542 - folic acid binding [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF015870.2
succinate dehydrogenase assembly factor 2
COORDINATES: protein motif:HMM:NF018908.2
COORDINATES: similar to AA sequence:RefSeq:WP_001303492.1
COORDINATES: protein motif:HMM:TIGR00276.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_004179723.1
GO:0015606 - spermidine transmembrane transporter activity [Evidence IEA]
GO:0015848 - spermidine transport [Evidence IEA]
multidrug/spermidine efflux SMR transporter subunit MdtJ
COORDINATES: similar to AA sequence:RefSeq:WP_020801673.1
multidrug/spermidine efflux SMR transporter subunit MdtI
COORDINATES: protein motif:HMM:TIGR01070.1
MurR/RpiR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01324.1
GO:0004121 - cystathionine beta-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000033840.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:NF007113.1
nucleoside triphosphate pyrophosphohydrolase
COORDINATES: protein motif:HMM:NF022840.2
COORDINATES: similar to AA sequence:RefSeq:WP_000170456.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011001079.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00654.1
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_003849026.1
GO:0042026 - protein refolding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF018762.2
IgaA/UmoB family intracellular growth attenuator
COORDINATES: similar to AA sequence:RefSeq:WP_004929282.1
COORDINATES: similar to AA sequence:RefSeq:WP_000594599.1
COORDINATES: protein motif:HMM:NF003392.0
GO:0043043 - peptide biosynthetic process [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015639.2
COORDINATES: similar to AA sequence:RefSeq:WP_000253273.1
COORDINATES: similar to AA sequence:RefSeq:WP_001040186.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212635.1
nicotinate-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF016290.2
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017482043.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018938.2
COORDINATES: protein motif:HMM:TIGR00784.1
GO:0015137 - citrate transmembrane transporter activity [Evidence IEA]
GO:0015746 - citrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF003615.0
GO:0005509 - calcium ion binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016198.2
GO:0030261 - chromosome condensation [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003422.0
COORDINATES: protein motif:HMM:TIGR01340.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005425.0
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF010635.0
COORDINATES: protein motif:HMM:NF006946.0
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_121602053.1
two-component system response regulator CreB
COORDINATES: similar to AA sequence:RefSeq:WP_016352392.1
GO:0016310 - phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
two-component system sensor histidine kinase CreC
COORDINATES: protein motif:HMM:NF008216.0
COORDINATES: protein motif:HMM:NF002987.0
GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007002.0
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008003.0
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008359.0
GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003469.0
COORDINATES: similar to AA sequence:RefSeq:WP_000206886.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007970.0
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000808666.1
COORDINATES: similar to AA sequence:RefSeq:WP_005489847.1
ferric iron uptake transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008844419.1
COORDINATES: similar to AA sequence:RefSeq:WP_005786580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: protein motif:HMM:NF013791.2
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005059070.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:YP_588444.1
COORDINATES: similar to AA sequence:RefSeq:WP_020457061.1
tol-pal system-associated acyl-CoA thioesterase
COORDINATES: protein motif:HMM:TIGR02796.1
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013357153.1
COORDINATES: protein motif:HMM:TIGR02794.1
GO:0098567 - periplasmic side of plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010989131.1
Tol-Pal system beta propeller repeat protein TolB
COORDINATES: similar to AA sequence:RefSeq:WP_010358079.1
peptidoglycan-associated lipoprotein Pal
COORDINATES: protein motif:HMM:TIGR02795.1
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: protein motif:HMM:NF006731.0
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_013203017.1
GO:0008662 - 1-phosphofructokinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:NF012503.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_010160098.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: similar to AA sequence:RefSeq:WP_000047157.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_249596.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_250030.1
COORDINATES: protein motif:HMM:NF011687.0
glutamate/aspartate ABC transporter permease GltK
COORDINATES: similar to AA sequence:RefSeq:WP_000020941.1
COORDINATES: protein motif:HMM:NF008063.0
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
glutamate/aspartate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF011675.0
CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter (CNNM) family, and was characterized as belonging to a set of three proteins, at least one of which must be present for CorA to function; Derived by automated computational analysis using gene prediction method: Protein Homology.
CNNM family magnesium/cobalt transport protein CorC
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017411988.1
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: similar to AA sequence:RefSeq:WP_007373852.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF005935.0
COORDINATES: protein motif:HMM:TIGR00669.1
GO:0004071 - aspartate-ammonia ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008195.0
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000257167.1
GO:0008803 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity [Evidence IEA]
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH
COORDINATES: similar to AA sequence:RefSeq:NP_414593.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_004857788.1
GO:0042277 - peptide binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]; GO:0060274 - maintenance of stationary phase [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0050821 - protein stabilization [Evidence IEA]
COORDINATES: protein motif:HMM:NF002997.0
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]; GO:0015920 - lipopolysaccharide transport [Evidence IEA]; GO:0010033 - response to organic substance [Evidence IEA]
COORDINATES: protein motif:HMM:NF008634.1
GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006378 - mRNA polyadenylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003764.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
3-phosphoserine/phosphohydroxythreonine transaminase
COORDINATES: protein motif:HMM:TIGR01141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008234.1
COORDINATES: protein motif:HMM:NF002646.0
GO:0008926 - mannitol-1-phosphate 5-dehydrogenase activity [Evidence IEA]
GO:0019594 - mannitol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000093247.1
GO:0022872 - protein-N(PI)-phosphohistidine-mannitol phosphotransferase system transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025077.2
COORDINATES: protein motif:HMM:TIGR01995.1
GO:0015573 - beta-glucoside transmembrane transporter activity [Evidence IEA]
GO:0015759 - beta-glucoside transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
beta-glucoside-specific PTS transporter subunit IIABC
COORDINATES: protein motif:HMM:NF013070.2
COORDINATES: similar to AA sequence:RefSeq:WP_000183364.1
LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase
COORDINATES: protein motif:HMM:NF010051.0
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: similar to AA sequence:RefSeq:WP_005133363.1
GO:0004455 - ketol-acid reductoisomerase activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003242598.1
COORDINATES: similar to AA sequence:RefSeq:WP_003243232.1
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF015532.2
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: protein motif:HMM:TIGR01726.1
COORDINATES: similar to AA sequence:RefSeq:WP_000019827.1
GO:0015514 - nitrite efflux transmembrane transporter activity [Evidence IEA]
GO:0015707 - nitrite transport [Evidence IEA]
NarK family nitrate/nitrite MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_000040458.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01660.1
COORDINATES: protein motif:HMM:TIGR00684.1
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: protein motif:HMM:NF014695.2
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: protein motif:HMM:NF014958.2
COORDINATES: similar to AA sequence:RefSeq:WP_002506185.1
COORDINATES: similar to AA sequence:RefSeq:WP_010744428.1
COORDINATES: similar to AA sequence:RefSeq:WP_010744429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010781273.1
COORDINATES: similar to AA sequence:RefSeq:WP_010739718.1
GO:0043801 - hexulose-6-phosphate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010781271.1
COORDINATES: similar to AA sequence:RefSeq:WP_005131796.1
COORDINATES: protein motif:HMM:TIGR00831.1
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01178.1
GO:0000034 - adenine deaminase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: protein motif:HMM:NF010167.0
COORDINATES: protein motif:HMM:NF021348.2
COORDINATES: protein motif:HMM:NF019246.2
YkoF family thiamine/hydroxymethylpyrimidine-binding protein
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: protein motif:HMM:NF006828.0
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]
elongation factor P--(R)-beta-lysine ligase
COORDINATES: protein motif:HMM:NF019575.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF007848.0
COORDINATES: protein motif:HMM:NF022173.2
COORDINATES: protein motif:HMM:NF023942.2
COORDINATES: protein motif:HMM:TIGR01771.1
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011058949.1
COORDINATES: similar to AA sequence:RefSeq:WP_001315977.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012986941.1
COORDINATES: similar to AA sequence:RefSeq:WP_005134442.1
COORDINATES: similar to AA sequence:RefSeq:WP_015742582.1
COORDINATES: protein motif:HMM:TIGR00036.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: protein motif:HMM:TIGR00538.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: protein motif:HMM:NF016135.2
COORDINATES: similar to AA sequence:RefSeq:WP_014068447.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018214.2
COORDINATES: protein motif:HMM:TIGR02494.1
GO:0043687 - post-translational protein modification [Evidence IEA]
glycyl-radical enzyme activating protein
formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme
COORDINATES: protein motif:HMM:NF007947.0
GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]
GO:0072488 - ammonium transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015367937.1
GO:0030234 - enzyme regulator activity [Evidence IEA]
GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
COORDINATES: protein motif:HMM:NF008730.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000081674.1
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_001198703.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: protein motif:HMM:NF016894.2
GO:0008671 - 2-dehydro-3-deoxygalactonokinase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008058.0
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_017465360.1
COORDINATES: protein motif:HMM:NF003743.0
GO:0016462 - pyrophosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020397.2
COORDINATES: protein motif:HMM:TIGR02142.1
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdenum ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:TIGR02141.1
GO:0015098 - molybdate ion transmembrane transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: protein motif:HMM:NF007958.0
molybdate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00637.1
COORDINATES: protein motif:HMM:NF008186.0
molybdate ABC transporter ATP-binding protein ModF
COORDINATES: similar to AA sequence:RefSeq:WP_005123745.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005074823.1
COORDINATES: protein motif:HMM:NF003509.0
GO:0008693 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]
bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase
COORDINATES: protein motif:HMM:NF025038.2
COORDINATES: similar to AA sequence:RefSeq:WP_011575334.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_013098576.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: protein motif:HMM:TIGR00793.1
GO:0015649 - 2-keto-3-deoxygluconate:proton symporter activity [Evidence IEA]
GO:0046411 - 2-keto-3-deoxygluconate transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_000583469.1
COORDINATES: similar to AA sequence:RefSeq:WP_000037562.1
COORDINATES: protein motif:HMM:NF017018.2
COORDINATES: protein motif:HMM:TIGR02283.1
COORDINATES: similar to AA sequence:RefSeq:WP_012767724.1
COORDINATES: similar to AA sequence:RefSeq:WP_012904980.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF010922.0
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring), homodimeric type
COORDINATES: similar to AA sequence:RefSeq:WP_000963574.1
GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]
GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA]
pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_001738005.1
COORDINATES: protein motif:HMM:TIGR02293.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_000708487.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004810 - CCA tRNA nucleotidyltransferase [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IEA]
multifunctional CCA addition/repair protein
COORDINATES: protein motif:HMM:TIGR04211.1
TIGR04211 family SH3 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001612668.1
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: similar to AA sequence:RefSeq:WP_000598616.1
molybdopterin synthase sulfur carrier subunit
COORDINATES: similar to AA sequence:RefSeq:WP_000852296.1
molybdopterin synthase catalytic subunit MoaE
COORDINATES: similar to AA sequence:RefSeq:WP_000373608.1
COORDINATES: similar to AA sequence:RefSeq:WP_016451727.1
GO:0004462 - lactoylglutathione lyase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0051596 - methylglyoxal catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000597179.1
glycine zipper 2TM domain-containing protein
COORDINATES: protein motif:HMM:NF008389.0
GO:0032297 - negative regulation of DNA-templated DNA replication initiation [Evidence IEA]
replication initiation negative regulator SeqA
COORDINATES: similar to AA sequence:RefSeq:WP_004197675.1
GO:0004614 - phosphoglucomutase activity [Evidence IEA]
phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)
COORDINATES: similar to AA sequence:RefSeq:WP_004657166.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017393471.1
GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF013463.2
COORDINATES: similar to AA sequence:RefSeq:WP_000003307.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF015810.2
GO:0016989 - sigma factor antagonist activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015825.2
MucB/RseB C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009088658.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004104575.1
COORDINATES: similar to AA sequence:RefSeq:WP_003848606.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257653.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257651.1
COORDINATES: similar to AA sequence:RefSeq:WP_005129765.1
COORDINATES: similar to AA sequence:RefSeq:WP_000459079.1
COORDINATES: similar to AA sequence:RefSeq:WP_002439184.1
COORDINATES: similar to AA sequence:RefSeq:WP_001196227.1
carboxylate/amino acid/amine transporter
COORDINATES: protein motif:HMM:TIGR02085.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
COORDINATES: protein motif:HMM:TIGR00035.1
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:TIGR01434.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003839.0
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:TIGR03413.1
GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IEA]
GO:0019243 - methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [Evidence IEA]
COORDINATES: protein motif:HMM:NF001236.0
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01406.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027429.2
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF014300.2
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004954.0
COORDINATES: similar to AA sequence:RefSeq:WP_004752586.1
COORDINATES: protein motif:HMM:TIGR00361.1
GO:0009290 - DNA import into cell involved in transformation [Evidence IEA]
DNA internalization-related competence protein ComEC/Rec2
COORDINATES: protein motif:HMM:NF008381.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0034040 - ATPase-coupled lipid transmembrane transporter activity [Evidence IEA]
lipid A ABC transporter ATP-binding protein/permease MsbA
COORDINATES: protein motif:HMM:NF014645.2
GO:0009029 - tetraacyldisaccharide 4'-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004244593.1
COORDINATES: protein motif:HMM:NF009905.0
GO:0008690 - 3-deoxy-manno-octulosonate cytidylyltransferase activity [Evidence IEA]
3-deoxy-manno-octulosonate cytidylyltransferase
COORDINATES: protein motif:HMM:NF013356.2
COORDINATES: protein motif:HMM:TIGR02453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011532463.1
COORDINATES: protein motif:HMM:TIGR00856.1
GO:0004151 - dihydroorotase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224583.1
COORDINATES: similar to AA sequence:RefSeq:WP_004797750.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_002888644.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003655.0
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF007861.0
COORDINATES: protein motif:HMM:NF007755.0
COORDINATES: similar to AA sequence:RefSeq:WP_004204358.1
COORDINATES: protein motif:HMM:NF016143.2
COORDINATES: protein motif:HMM:NF008758.0
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
COORDINATES: protein motif:HMM:NF007914.0
COORDINATES: similar to AA sequence:RefSeq:WP_000272186.1
COORDINATES: protein motif:HMM:TIGR03302.1
GO:0065003 - protein-containing complex assembly [Evidence IEA]
outer membrane protein assembly factor BamD
COORDINATES: protein motif:HMM:NF008385.0
23S rRNA pseudouridine(1911/1915/1917) synthase RluD
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: protein motif:HMM:TIGR03168.1
GO:0008662 - 1-phosphofructokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004106015.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227965.1
COORDINATES: protein motif:HMM:TIGR00539.1
COORDINATES: protein motif:HMM:NF011397.0
GO:0047429 - nucleoside triphosphate diphosphatase activity [Evidence IEA]
GO:0009143 - nucleoside triphosphate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012904449.1
bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
COORDINATES: protein motif:HMM:NF002485.0
COORDINATES: protein motif:HMM:NF008249.0
23S rRNA pseudouridine(955/2504/2580) synthase RluC
COORDINATES: similar to AA sequence:RefSeq:WP_004144724.1
COORDINATES: similar to AA sequence:RefSeq:WP_004247681.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
COORDINATES: similar to AA sequence:RefSeq:WP_005044939.1
COORDINATES: protein motif:HMM:TIGR00155.1
COORDINATES: protein motif:HMM:NF008070.2
COORDINATES: protein motif:HMM:NF015823.2
ABC-type transport auxiliary lipoprotein family protein
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: protein motif:HMM:NF019619.2
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018485.2
COORDINATES: similar to AA sequence:RefSeq:WP_010966526.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1
COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1
COORDINATES: protein motif:HMM:NF007016.0
COORDINATES: protein motif:HMM:NF008769.0
ClpXP protease specificity-enhancing factor
COORDINATES: protein motif:HMM:TIGR00494.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF003455.0
GO:0008859 - exoribonuclease II activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_308612.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF004678.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: protein motif:HMM:NF003429.0
GO:0008832 - dGTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006203 - dGTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF036804.2
COORDINATES: similar to AA sequence:RefSeq:WP_000491142.1
COORDINATES: protein motif:HMM:NF016293.2
COORDINATES: protein motif:HMM:NF000672.0
COORDINATES: protein motif:HMM:TIGR02639.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0043335 - protein unfolding [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpA
COORDINATES: similar to AA sequence:RefSeq:WP_001340434.1
COORDINATES: protein motif:HMM:NF008159.0
COORDINATES: protein motif:HMM:NF008012.0
GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ
COORDINATES: protein motif:HMM:NF008097.0
16S rRNA pseudouridine(516) synthase RsuA
COORDINATES: protein motif:HMM:NF008314.0
GO:1990961 - xenobiotic detoxification by transmembrane export across the plasma membrane [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
Bcr/CflA family multidrug efflux MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_000471965.1
DNA translocase FtsK 4TM domain-containing protein
COORDINATES: protein motif:HMM:TIGR00547.1
GO:0008320 - protein transmembrane transporter activity [Evidence IEA]
outer membrane lipoprotein chaperone LolA
COORDINATES: similar to AA sequence:RefSeq:WP_000067755.1
replication-associated recombination protein A
COORDINATES: similar to AA sequence:RefSeq:WP_003218092.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00688.1
COORDINATES: protein motif:HMM:NF008356.0
pyruvate formate lyase 1-activating protein
COORDINATES: protein motif:HMM:TIGR01255.1
GO:0008861 - formate C-acetyltransferase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008069.0
COORDINATES: protein motif:HMM:NF018446.2
GO:0005267 - potassium channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040716.1
30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
COORDINATES: protein motif:HMM:NF025475.2
COORDINATES: protein motif:HMM:NF015423.2
COORDINATES: protein motif:HMM:NF004079.0
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_017898885.1
COORDINATES: similar to AA sequence:RefSeq:WP_001300573.1
COORDINATES: protein motif:HMM:TIGR00728.1
GO:0035673 - oligopeptide transmembrane transporter activity [Evidence IEA]
GO:0006857 - oligopeptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005312070.1
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:NF002541.0
COORDINATES: protein motif:HMM:NF007554.0
COORDINATES: similar to AA sequence:RefSeq:WP_000712658.1
COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
acetolactate synthase 2 catalytic subunit
COORDINATES: protein motif:HMM:NF008362.0
COORDINATES: similar to AA sequence:RefSeq:YP_005224416.1
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012737119.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: protein motif:HMM:NF008453.0
COORDINATES: protein motif:HMM:NF006778.0
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000798886.1
GO:0051540 - metal cluster binding [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:NF018509.2
outer membrane protein assembly factor BamC
COORDINATES: similar to AA sequence:RefSeq:WP_010158404.1
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: protein motif:HMM:NF016194.2
COORDINATES: protein motif:HMM:NF016982.2
COORDINATES: similar to AA sequence:RefSeq:WP_020883088.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0000103 - sulfate assimilation [Evidence IEA]
COORDINATES: protein motif:HMM:NF008025.0
two-component system sensor histidine kinase PmrB
COORDINATES: similar to AA sequence:RefSeq:WP_000697915.1
two-component system response regulator PmrA
COORDINATES: protein motif:HMM:NF008619.0
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF025346.2
COORDINATES: protein motif:HMM:NF009557.0
GO:0009014 - succinyl-diaminopimelate desuccinylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000631931.1
COORDINATES: protein motif:HMM:NF001095.0
COORDINATES: similar to AA sequence:RefSeq:WP_017816391.1
COORDINATES: similar to AA sequence:RefSeq:WP_001563086.1
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000999950.1
COORDINATES: protein motif:HMM:NF028057.2
COORDINATES: protein motif:HMM:TIGR01378.1
GO:0004788 - thiamine diphosphokinase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020237790.1
GO:0006474 - N-terminal protein amino acid acetylation [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: protein motif:HMM:NF015560.2
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007023.0
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC
COORDINATES: protein motif:HMM:NF016701.2
COORDINATES: similar to AA sequence:RefSeq:WP_000506572.1
COORDINATES: protein motif:HMM:NF016239.2
GO:0008770 - [acyl-carrier-protein] phosphodiesterase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007960.0
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]; GO:0032324 - molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002747.0
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: protein motif:HMM:TIGR00735.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: similar to AA sequence:RefSeq:WP_007525894.1
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF003937.0
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00070.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00514
His leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF017669.2
COORDINATES: protein motif:HMM:NF019057.2
COORDINATES: protein motif:HMM:NF025660.2
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: protein motif:HMM:NF006960.0
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF000818.0
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: similar to AA sequence:RefSeq:WP_001295564.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
iron-sulfur cluster insertion protein ErpA
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_001077009.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: protein motif:HMM:NF005987.0
GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000017096.1
COORDINATES: protein motif:HMM:NF014659.2
COORDINATES: similar to AA sequence:RefSeq:WP_003195061.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004363 - glutathione synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008690.0
16S rRNA (uracil(1498)-N(3))-methyltransferase
COORDINATES: protein motif:HMM:TIGR00526.1
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF010028.0
COORDINATES: protein motif:HMM:NF002963.0
COORDINATES: protein motif:HMM:NF007911.0
COORDINATES: similar to AA sequence:RefSeq:YP_005224364.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024491.2
COORDINATES: protein motif:HMM:TIGR02176.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
pyruvate:ferredoxin (flavodoxin) oxidoreductase
COORDINATES: protein motif:HMM:NF014708.2
COORDINATES: protein motif:HMM:NF003766.0
GO:0008973 - phosphopentomutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008262.1
GO:0019829 - ATPase-coupled cation transmembrane transporter activity [Evidence IEA]
zinc/cadmium/mercury/lead-transporting ATPase
COORDINATES: protein motif:HMM:TIGR02823.1
COORDINATES: protein motif:HMM:NF039735.1
COORDINATES: similar to AA sequence:RefSeq:WP_001186371.1
COORDINATES: protein motif:HMM:TIGR02358.1
putative hydroxymethylpyrimidine transporter CytX
COORDINATES: protein motif:HMM:NF007882.0
COORDINATES: protein motif:HMM:NF017652.2
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:NF037008.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01921.1
GO:0047850 - diaminopimelate dehydrogenase activity [Evidence IEA]
GO:0009085 - lysine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_014833153.1
COORDINATES: similar to AA sequence:RefSeq:WP_017465480.1
multidrug/biocide efflux PACE transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014582023.1
COORDINATES: protein motif:HMM:NF013460.2
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000209756.1
GO:0017118 - lipoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014813.2
GO:0009404 - toxin metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF018431.2
COORDINATES: protein motif:HMM:NF016156.2
COORDINATES: protein motif:HMM:NF012447.2
COORDINATES: similar to AA sequence:RefSeq:WP_010968798.1
COORDINATES: protein motif:HMM:NF009709.0
COORDINATES: protein motif:HMM:NF007789.0
GO:0015173 - aromatic amino acid transmembrane transporter activity [Evidence IEA]
GO:0015801 - aromatic amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF008744.0
COORDINATES: protein motif:HMM:NF005988.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0050262 - ribosylnicotinamide kinase activity [Evidence IEA]
multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR
COORDINATES: protein motif:HMM:TIGR04408.1
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter permease LptG
COORDINATES: protein motif:HMM:TIGR04407.1
LPS export ABC transporter permease LptF
COORDINATES: protein motif:HMM:NF002074.0
GO:0019538 - protein metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016267.2
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF024728.2
COORDINATES: protein motif:HMM:NF027602.2
COORDINATES: protein motif:HMM:NF016702.2
VENN motif pre-toxin domain-containing protein
COORDINATES: protein motif:HMM:NF037249.2
COORDINATES: protein motif:HMM:NF022214.2
COORDINATES: similar to AA sequence:RefSeq:WP_006178345.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890847.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890848.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020476.2
COORDINATES: similar to AA sequence:RefSeq:WP_020239516.1
cleaves DNA at apurinic or apyrimidinic sites; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017807.2
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: similar to AA sequence:RefSeq:WP_016250180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012519084.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017347.2
GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid transport system II carrier protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF008332.0
GO:0030643 - cellular phosphate ion homeostasis [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_009088771.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:NF008430.0
GO:0035435 - phosphate ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF008435.0
COORDINATES: protein motif:HMM:NF008171.0
GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: protein motif:HMM:NF008235.0
GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
phosphate regulon sensor histidine kinase PhoR
COORDINATES: similar to AA sequence:RefSeq:WP_000113934.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
phosphate regulon transcriptional regulator PhoB
COORDINATES: protein motif:HMM:NF033216.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197960.1
COORDINATES: protein motif:HMM:NF012321.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF005365.0
COORDINATES: protein motif:HMM:NF013355.2
COORDINATES: similar to AA sequence:RefSeq:WP_003859733.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
COORDINATES: protein motif:HMM:NF011995.0
carboxy-S-adenosyl-L-methionine synthase CmoA
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:TIGR01388.1
GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
COORDINATES: protein motif:HMM:NF020296.2
COORDINATES: protein motif:HMM:NF015784.2
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
SulA-like leucine-rich domain-containing protein
COORDINATES: protein motif:HMM:NF017870.2
COORDINATES: protein motif:HMM:NF007966.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008076.0
GO:0042953 - lipoprotein transport [Evidence IEA]
lipoprotein-releasing ABC transporter permease subunit LolC
COORDINATES: similar to AA sequence:RefSeq:WP_012837162.1
lipoprotein-releasing ABC transporter ATP-binding protein LolD
COORDINATES: protein motif:HMM:NF008357.0
lipoprotein-releasing ABC transporter permease subunit LolE
COORDINATES: similar to AA sequence:RefSeq:WP_003242487.1
COORDINATES: protein motif:HMM:TIGR04076.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF008365.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
fumarate/nitrate reduction transcriptional regulator Fnr
COORDINATES: protein motif:HMM:NF018986.2
COORDINATES: protein motif:HMM:NF008348.1
COORDINATES: protein motif:HMM:NF015669.2
COORDINATES: protein motif:HMM:NF006664.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003917.0
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03706.1
GO:0004309 - exopolyphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006798 - polyphosphate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013014.2
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF016152.2
COORDINATES: protein motif:HMM:NF007976.0
23S rRNA pseudouridine(2605) synthase RluB
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF008393.0
COORDINATES: similar to AA sequence:RefSeq:WP_003821131.1
GO:0008676 - 3-deoxy-8-phosphooctulonate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000347310.1
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003202249.1
COORDINATES: similar to AA sequence:RefSeq:WP_012006413.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00548.1
lipoprotein insertase outer membrane protein LolB
COORDINATES: similar to AA sequence:RefSeq:WP_004739813.1
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: protein motif:HMM:NF019819.2
COORDINATES: protein motif:HMM:NF008746.0
GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0008852 - exodeoxyribonuclease I activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF002494.0
COORDINATES: similar to AA sequence:RefSeq:WP_019705233.1
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: similar to AA sequence:RefSeq:WP_001742668.1
GO:0015424 - ABC-type amino acid transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0003333 - amino acid transmembrane transport [Evidence IEA]
arginine ABC transporter ATP-binding protein ArtP
COORDINATES: similar to AA sequence:RefSeq:WP_001295339.1
arginine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF008337.0
GO:0071705 - nitrogen compound transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF008336.0
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF001824.0
GO:0009381 - excinuclease ABC activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010588585.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: protein motif:HMM:TIGR03764.1
COORDINATES: protein motif:HMM:NF022645.2
COORDINATES: protein motif:HMM:NF040582.1
STY4528 family pathogenicity island replication protein
COORDINATES: protein motif:HMM:TIGR03761.1
TIGR03761 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_012761393.1
COORDINATES: similar to AA sequence:RefSeq:WP_008733912.1
COORDINATES: similar to AA sequence:RefSeq:WP_009459717.1
COORDINATES: protein motif:HMM:NF018612.2
COORDINATES: protein motif:HMM:NF023523.2
COORDINATES: similar to AA sequence:RefSeq:WP_012248301.1
COORDINATES: similar to AA sequence:RefSeq:WP_016253277.1
COORDINATES: similar to AA sequence:RefSeq:WP_003050309.1
COORDINATES: protein motif:HMM:TIGR03748.1
COORDINATES: similar to AA sequence:RefSeq:WP_008733888.1
TIGR03759 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_005797768.1
COORDINATES: protein motif:HMM:NF022523.2
COORDINATES: similar to AA sequence:RefSeq:WP_003821101.1
type IV conjugative transfer system coupling protein TraD
TIGR03747 family integrating conjugative element membrane protein
COORDINATES: protein motif:HMM:NF025625.2
COORDINATES: protein motif:HMM:NF037510.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: protein motif:HMM:NF014442.2
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014159579.1
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: protein motif:HMM:NF017953.2
DNA double-strand break repair nuclease NurA
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF025028.2
COORDINATES: protein motif:HMM:NF024895.2
GO:0044384 - host outer membrane [Evidence IEA]
Ail/Lom family outer membrane beta-barrel protein
COORDINATES: similar to AA sequence:RefSeq:WP_010744447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010739695.1
D-isomer specific 2-hydroxyacid dehydrogenase family protein
COORDINATES: protein motif:HMM:TIGR01196.1
GO:0004456 - phosphogluconate dehydratase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]
COORDINATES: protein motif:HMM:NF011563.0
gluconate operon transcriptional repressor GntR
COORDINATES: similar to AA sequence:RefSeq:WP_000692754.1
COORDINATES: protein motif:HMM:NF008112.0
membrane-bound lytic murein transglycosylase MltF
COORDINATES: similar to AA sequence:RefSeq:WP_004752595.1
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001979799.1
COORDINATES: similar to AA sequence:RefSeq:WP_017907393.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0050992 - dimethylallyl diphosphate biosynthetic process [Evidence IEA]; GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_000083370.1
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF004160.0
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: similar to AA sequence:RefSeq:WP_004184878.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008245.0
L-methionine/branched-chain amino acid transporter
COORDINATES: protein motif:HMM:NF008454.0
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0005975 - carbohydrate metabolic process [Evidence IEA]
bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
COORDINATES: similar to AA sequence:RefSeq:WP_002883427.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01410.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
Sec-independent protein translocase protein TatB
COORDINATES: similar to AA sequence:RefSeq:WP_005755277.1
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:NF003404.0
ubiquinone biosynthesis regulatory protein kinase UbiB
COORDINATES: similar to AA sequence:RefSeq:WP_007704556.1
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
COORDINATES: protein motif:HMM:NF020698.2
COORDINATES: protein motif:HMM:NF008117.0
COORDINATES: protein motif:HMM:TIGR00022.1
COORDINATES: protein motif:HMM:TIGR01951.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_005017729.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009256459.1
COORDINATES: protein motif:HMM:NF001220.0
COORDINATES: similar to AA sequence:RefSeq:WP_000074527.1
COORDINATES: protein motif:HMM:NF006578.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009427513.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF003448.0
bifunctional uridylyltransferase/uridylyl-removing protein GlnD
COORDINATES: similar to AA sequence:RefSeq:WP_003243374.1
COORDINATES: protein motif:HMM:NF007831.0
COORDINATES: protein motif:HMM:NF008676.0
aromatic amino acid DMT transporter YddG
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001712908.1
GO:0019843 - rRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: similar to AA sequence:RefSeq:WP_011707075.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125659.1
GO:0042274 - ribosomal small subunit biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: protein motif:HMM:TIGR00342.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01383.1
COORDINATES: similar to AA sequence:RefSeq:WP_004868122.1
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000376480.1
BolA family iron metabolism protein IbaG
COORDINATES: protein motif:HMM:NF024857.2
COORDINATES: protein motif:HMM:NF011697.0
COORDINATES: protein motif:HMM:TIGR04430.1
GO:0015914 - phospholipid transport [Evidence IEA]
outer membrane lipid asymmetry maintenance protein MlaD
COORDINATES: similar to AA sequence:RefSeq:WP_013346938.1
lipid asymmetry maintenance ABC transporter permease subunit MlaE
COORDINATES: protein motif:HMM:NF008809.0
phospholipid ABC transporter ATP-binding protein MlaF
COORDINATES: similar to AA sequence:RefSeq:WP_012367735.1
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004244666.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0019358 - nicotinate nucleotide salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004244664.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_062955002.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003559.0
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008650.1
COORDINATES: protein motif:HMM:NF024628.2
COORDINATES: protein motif:HMM:NF001628.0
GO:0008968 - D-sedoheptulose 7-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005126203.1
COORDINATES: protein motif:HMM:NF008388.0
GO:0005515 - protein binding [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003434.0
GO:0003723 - RNA binding [Evidence IEA]; GO:0033592 - RNA strand annealing activity [Evidence IEA]; GO:0034057 - RNA strand-exchange activity [Evidence IEA]
GO:0010608 - post-transcriptional regulation of gene expression [Evidence IEA]
COORDINATES: protein motif:HMM:NF018709.2
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: protein motif:HMM:NF008931.0
small ribosomal subunit biogenesis GTPase RsgA
COORDINATES: similar to AA sequence:RefSeq:WP_002053300.1
GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF004385.0
lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
COORDINATES: similar to AA sequence:RefSeq:WP_016159181.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000183060.1
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0009225 - nucleotide-sugar metabolic process [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase GalU
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_009240721.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076565591.1
COORDINATES: protein motif:HMM:NF012621.2
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007116620.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: similar to AA sequence:RefSeq:WP_004704714.1
COORDINATES: similar to AA sequence:RefSeq:WP_014896110.1
GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00211.2
COORDINATES: protein motif:HMM:NF018496.2
COORDINATES: protein motif:HMM:TIGR00011.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012589.2
COORDINATES: protein motif:HMM:NF028222.2
COORDINATES: protein motif:HMM:NF013916.2
LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee
COORDINATES: similar to AA sequence:RefSeq:WP_015934954.1
COORDINATES: similar to AA sequence:RefSeq:WP_000331377.1
GO:0045333 - cellular respiration [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01583.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01562.1
formate dehydrogenase accessory protein FdhE
COORDINATES: similar to AA sequence:RefSeq:WP_003100588.1
COORDINATES: protein motif:HMM:NF016292.2
COORDINATES: similar to AA sequence:RefSeq:WP_007116341.1
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit A
COORDINATES: protein motif:HMM:NF008091.0
COORDINATES: protein motif:HMM:TIGR02274.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024379.2
COORDINATES: similar to AA sequence:RefSeq:WP_012277143.1
COORDINATES: similar to AA sequence:RefSeq:WP_000118520.1
quaternary ammonium compound efflux SMR transporter SugE
COORDINATES: protein motif:HMM:NF008669.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
iron-sulfur cluster carrier protein ApbC
COORDINATES: protein motif:HMM:NF001100.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021606.2
COORDINATES: protein motif:HMM:NF024562.2
COORDINATES: protein motif:HMM:NF011291.0
GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF008241.0
GO:0015209 - cytosine transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001301240.1
COORDINATES: similar to AA sequence:RefSeq:WP_003104851.1
COORDINATES: similar to AA sequence:RefSeq:WP_001954004.1
COORDINATES: protein motif:HMM:TIGR00835.1
GO:0005416 - amino acid:cation symporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001610286.1
COORDINATES: protein motif:HMM:NF011000.0
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04409.1
LPS export ABC transporter periplasmic protein LptC
COORDINATES: protein motif:HMM:TIGR03002.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0001530 - lipopolysaccharide binding [Evidence IEA]
lipopolysaccharide transport periplasmic protein LptA
COORDINATES: similar to AA sequence:RefSeq:WP_004091254.1
LPS export ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008170156.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: protein motif:HMM:TIGR01212.1
This family includes YhcC from E. coli K-12, an uncharacterized radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF001462.0
COORDINATES: similar to AA sequence:RefSeq:WP_010989142.1