Weissella jogaejeotgali strain FOL01 plasmid pFOL01, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Weissella.
Complete Genome Sequence of Weissella jogaejeotgali FOL01
Submitted (21-MAR-2016) Food Science and Biotechnology, Kyung Hee University, 1732, Deogyeong-daero, Giheung-gu, Yongin, Gyeonggi 446-701, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP014333.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0 HGAP.2\nGenome Coverage :: 497.32\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 02:36:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,161\nCDSs (total) :: 2,058\nGenes (coding) :: 2,005\nCDSs (with protein) :: 2,005\nGenes (RNA) :: 103\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 75\nncRNAs :: 3\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 21 of 53\nPseudo Genes (incomplete) :: 28 of 53\nPseudo Genes (internal stop) :: 14 of 53\nPseudo Genes (multiple problems) :: 9 of 53\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Jogaejeotgal, a Traditional Korean Fermented Seafood
COORDINATES: similar to AA sequence:RefSeq:WP_004906024.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010372436.1
COORDINATES: protein motif:HMM:NF025080.2
COORDINATES: similar to AA sequence:RefSeq:WP_003125448.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014333939.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558186.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012576.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014947622.1
COORDINATES: similar to AA sequence:RefSeq:WP_002827253.1
COORDINATES: similar to AA sequence:RefSeq:WP_004910005.1
COORDINATES: similar to AA sequence:RefSeq:WP_014081491.1
GO:0008801 - beta-phosphoglucomutase activity [Evidence IEA]
GO:0046352 - disaccharide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025063.2
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003685301.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_015474649.1
COORDINATES: similar to AA sequence:RefSeq:WP_016527412.1
COORDINATES: similar to AA sequence:RefSeq:WP_016370331.1
COORDINATES: similar to AA sequence:RefSeq:WP_002328814.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005470367.1
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010620826.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_003553350.1
relaxase/mobilization nuclease domain-containing protein
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element IS1163 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010276791.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007127120.1
GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
type II toxin-antitoxin system YoeB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010012522.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_002449121.1
COORDINATES: similar to AA sequence:RefSeq:WP_002334370.1
COORDINATES: protein motif:HMM:NF016294.2
COORDINATES: similar to AA sequence:RefSeq:WP_005728426.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
filamentation induced by cAMP protein fic
COORDINATES: similar to AA sequence:RefSeq:WP_016387560.1
COORDINATES: similar to AA sequence:RefSeq:WP_003582479.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014939378.1
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
COORDINATES: similar to AA sequence:RefSeq:WP_010010572.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016511890.1
iron export ABC transporter permease subunit FetB