Candidatus Nitrosoglobus terrae strain TAO100 plasmid pTAO100.
Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Candidatus Nitrosoglobus.
An acid-tolerant ammonia-oxidizing gamma-proteobacterium from soil
Submitted (06-APR-2015) Contact:Masahito Hayatsu National Institute for Agro-Environmental Sciences, Environmental Biofunction Division; Kannondai 3-1-3, Tsukuba, Ibaraki 305-8604, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP014837.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Hierarchical Genome Assembly Process v. 3\nGenome Coverage :: 60x\nSequencing Technology :: PacBio RS II; Illumina MiSeq; ABI 3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 01:51:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,931\nCDSs (total) :: 1,877\nGenes (coding) :: 1,859\nCDSs (with protein) :: 1,859\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 4 of 18\nPseudo Genes (incomplete) :: 15 of 18\nPseudo Genes (internal stop) :: 4 of 18\nPseudo Genes (multiple problems) :: 4 of 18\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF038290.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005372028.1
COORDINATES: protein motif:HMM:NF017826.2
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.