Empedobacter stercoris strain ES183 plasmid pES183-1, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Empedobacter.
Identification of novel tetracycline resistance gene tet(X14) and its co-occurrence with tet(X2) in a tigecycline-resistant and colistin-resistant Empedobacter stercoris
Submitted (18-MAY-2020) Bacteria Resistance Monitoring and Quality Control Center, Shenzhen People's Hospital, Dongmen North Road 1017, Luohu District, Shenzhen, Guandong 518020, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP053699.1.\nBacteria and source DNA available from ChenYong/Shenzhen People's\nHospital.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 250.0x\nSequencing Technology :: Oxford Nanopore and Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 14:24:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,728\nCDSs (total) :: 2,621\nGenes (coding) :: 2,579\nCDSs (with protein) :: 2,579\nGenes (RNA) :: 107\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 3\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 23 of 42\nPseudo Genes (incomplete) :: 19 of 42\nPseudo Genes (internal stop) :: 9 of 42\nPseudo Genes (multiple problems) :: 8 of 42\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016649370.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006263616.1
COORDINATES: protein motif:HMM:NF019884.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF024758.2