Cnuibacter physcomitrellae strain XA(T) plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Cnuibacter.
Submitted (09-APR-2017) College of Life Science, Capital Normal University, Xisanhuan North Road 105#, Haidian, beijing 100048, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP020717.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. MARCH-2017\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 15:44:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,167\nCDSs (total) :: 4,113\nGenes (coding) :: 4,088\nCDSs (with protein) :: 4,088\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 9 of 25\nPseudo Genes (incomplete) :: 15 of 25\nPseudo Genes (internal stop) :: 4 of 25\nPseudo Genes (multiple problems) :: 3 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF017885.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611170.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017829293.1
COORDINATES: protein motif:HMM:NF015692.2
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012876417.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013769582.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF021445.2
COORDINATES: similar to AA sequence:RefSeq:WP_012397799.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012866197.1
COORDINATES: similar to AA sequence:RefSeq:WP_013289031.1
COORDINATES: protein motif:HMM:NF013421.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_006593161.1
COORDINATES: similar to AA sequence:RefSeq:WP_019182069.1
COORDINATES: similar to AA sequence:RefSeq:WP_002856941.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016463494.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923389.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_005143535.1
COORDINATES: similar to AA sequence:RefSeq:WP_012037541.1
COORDINATES: similar to AA sequence:RefSeq:WP_012300278.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882291.1
COORDINATES: protein motif:HMM:NF016149.2
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010155341.1
COORDINATES: similar to AA sequence:RefSeq:WP_009772370.1
COORDINATES: protein motif:HMM:NF014626.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_013603100.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931182.1
COORDINATES: protein motif:HMM:NF013209.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020076126.1
COORDINATES: similar to AA sequence:RefSeq:WP_011210843.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_013347384.1
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: similar to AA sequence:RefSeq:WP_005264154.1
COORDINATES: similar to AA sequence:RefSeq:WP_006940556.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF024359.2