Cnuibacter physcomitrellae strain XA(T) plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Cnuibacter.
Submitted (09-APR-2017) College of Life Science, Capital Normal University, Xisanhuan North Road 105#, Haidian, beijing 100048, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP020716.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. MARCH-2017\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 15:44:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,167\nCDSs (total) :: 4,113\nGenes (coding) :: 4,088\nCDSs (with protein) :: 4,088\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 9 of 25\nPseudo Genes (incomplete) :: 15 of 25\nPseudo Genes (internal stop) :: 4 of 25\nPseudo Genes (multiple problems) :: 3 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017981608.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010226583.1
GO:0004061 - arylformamidase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF036525.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010314947.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003940415.1
COORDINATES: similar to AA sequence:RefSeq:WP_014214280.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025008.2
COORDINATES: similar to AA sequence:RefSeq:WP_011209474.1
COORDINATES: similar to AA sequence:RefSeq:WP_013585745.1
COORDINATES: similar to AA sequence:RefSeq:WP_020097989.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074950.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_007565557.1
COORDINATES: protein motif:HMM:NF038065.1
COORDINATES: similar to AA sequence:RefSeq:WP_018191794.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_015490097.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483178.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017832549.1
COORDINATES: similar to AA sequence:RefSeq:WP_005391247.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019175580.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006246577.1
COORDINATES: similar to AA sequence:RefSeq:WP_041767552.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019178950.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017885417.1
COORDINATES: protein motif:HMM:NF040012.1
COORDINATES: similar to AA sequence:RefSeq:WP_017792471.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_017824019.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771657.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008720036.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:NF022062.2
COORDINATES: protein motif:HMM:NF024639.2
COORDINATES: similar to AA sequence:RefSeq:WP_006590962.1
COORDINATES: similar to AA sequence:RefSeq:WP_019971198.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014446809.1
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: similar to AA sequence:RefSeq:WP_003847086.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010850102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018135085.1
COORDINATES: similar to AA sequence:RefSeq:WP_002854293.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009647418.1
COORDINATES: similar to AA sequence:RefSeq:WP_005054876.1
COORDINATES: similar to AA sequence:RefSeq:WP_005054913.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007633606.1
COORDINATES: similar to AA sequence:RefSeq:WP_017885630.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005049893.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018158568.1
GO:0015267 - channel activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005049901.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011689637.1
COORDINATES: similar to AA sequence:RefSeq:WP_013583820.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931439.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018530338.1
COORDINATES: similar to AA sequence:RefSeq:WP_013586644.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_011015372.1
COORDINATES: similar to AA sequence:RefSeq:WP_011015373.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012046210.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020515747.1
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_011436783.1
COORDINATES: similar to AA sequence:RefSeq:WP_011606150.1
COORDINATES: similar to AA sequence:RefSeq:WP_011690100.1
COORDINATES: similar to AA sequence:RefSeq:WP_019134919.1
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:TIGR00350.1
COORDINATES: similar to AA sequence:RefSeq:WP_018190500.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003797670.1
COORDINATES: similar to AA sequence:RefSeq:WP_020097495.1
COORDINATES: similar to AA sequence:RefSeq:WP_018191087.1
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009772945.1
COORDINATES: similar to AA sequence:RefSeq:WP_019618346.1
COORDINATES: similar to AA sequence:RefSeq:WP_020645864.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243362.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005050633.1
COORDINATES: similar to AA sequence:RefSeq:WP_009777091.1
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: similar to AA sequence:RefSeq:WP_019748760.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF013662.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020108148.1
COORDINATES: similar to AA sequence:RefSeq:WP_018192246.1
COORDINATES: similar to AA sequence:RefSeq:WP_018192245.1
COORDINATES: similar to AA sequence:RefSeq:WP_012397799.1
COORDINATES: similar to AA sequence:RefSeq:WP_009884427.1
COORDINATES: similar to AA sequence:RefSeq:WP_006593161.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776990.1
COORDINATES: similar to AA sequence:RefSeq:WP_002856941.1
COORDINATES: similar to AA sequence:RefSeq:WP_003876213.1
COORDINATES: protein motif:HMM:NF013421.2
COORDINATES: similar to AA sequence:RefSeq:WP_008282315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012868624.1
COORDINATES: similar to AA sequence:RefSeq:WP_003884804.1
COORDINATES: similar to AA sequence:RefSeq:WP_012037541.1
COORDINATES: similar to AA sequence:RefSeq:WP_015491492.1
COORDINATES: similar to AA sequence:RefSeq:WP_012246163.1
COORDINATES: protein motif:HMM:NF016149.2
COORDINATES: similar to AA sequence:RefSeq:WP_009773805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012299004.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831638.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011931155.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024359.2
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010078804.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016874840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010204084.1
toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF017524.2
MobC family plasmid mobilization relaxosome protein
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_013347384.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_011210843.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020076126.1
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_011931182.1
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: similar to AA sequence:RefSeq:WP_008720936.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603100.1
COORDINATES: similar to AA sequence:RefSeq:WP_005268119.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537229.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF037150.2
COORDINATES: similar to AA sequence:RefSeq:WP_019179758.1
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: similar to AA sequence:RefSeq:WP_008943728.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004019890.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004019889.1
COORDINATES: similar to AA sequence:RefSeq:WP_020294079.1
COORDINATES: similar to AA sequence:RefSeq:WP_013674375.1
COORDINATES: protein motif:HMM:NF013920.2
COORDINATES: similar to AA sequence:RefSeq:WP_015914554.1
COORDINATES: similar to AA sequence:RefSeq:WP_005793294.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565824.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007695264.1
COORDINATES: similar to AA sequence:RefSeq:WP_013674383.1
N-acyl homoserine lactonase family protein
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014349869.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480152.1
2,4'-dihydroxyacetophenone dioxygenase family protein
COORDINATES: protein motif:HMM:TIGR03619.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_005278129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692274.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_005278131.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005049300.1
COORDINATES: similar to AA sequence:RefSeq:WP_018173349.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019180908.1
COORDINATES: similar to AA sequence:RefSeq:WP_005055005.1
COORDINATES: similar to AA sequence:RefSeq:WP_014920739.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010145632.1
electron transfer flavoprotein subunit alpha/FixB family protein