Liquorilactobacillus mali strain LM596 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Liquorilactobacillus.
Submitted (08-OCT-2019) College of Health Science, Korea University, Anam-ro 145, Seoul 02841, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP045037.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. v2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 260.63x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 01:22:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,582\nCDSs (total) :: 2,500\nGenes (coding) :: 2,420\nCDSs (with protein) :: 2,420\nGenes (RNA) :: 82\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 52 of 80\nPseudo Genes (incomplete) :: 30 of 80\nPseudo Genes (internal stop) :: 5 of 80\nPseudo Genes (multiple problems) :: 7 of 80\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016384766.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003601488.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005685191.1
ABC transporter permease/substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003576557.1
COORDINATES: similar to AA sequence:RefSeq:WP_016387660.1
COORDINATES: similar to AA sequence:RefSeq:WP_003574021.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016497299.1
GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
CopY/TcrY family copper transport repressor
COORDINATES: similar to AA sequence:RefSeq:WP_003660027.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004898347.1
COORDINATES: similar to AA sequence:RefSeq:WP_002817475.1
COORDINATES: similar to AA sequence:RefSeq:WP_002817477.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003645890.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611112.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015638790.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003680947.1
COORDINATES: similar to AA sequence:RefSeq:WP_013355080.1
COORDINATES: similar to AA sequence:RefSeq:WP_003688755.1
glutathione S-transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002328814.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680034.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690776.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241732.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
IS30-like element ISLpl1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003687815.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013694.2
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003687813.1
COORDINATES: similar to AA sequence:RefSeq:WP_002344507.1
COORDINATES: similar to AA sequence:RefSeq:WP_010579556.1
COORDINATES: similar to AA sequence:RefSeq:WP_003688415.1
COORDINATES: similar to AA sequence:RefSeq:WP_004562667.1
COORDINATES: similar to AA sequence:RefSeq:WP_010012305.1
COORDINATES: protein motif:HMM:NF021897.2
COORDINATES: similar to AA sequence:RefSeq:WP_003690893.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690894.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558186.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element IS1163 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005728424.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691010.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_003660197.1
COORDINATES: similar to AA sequence:RefSeq:WP_015007070.1
COORDINATES: similar to AA sequence:RefSeq:WP_003597916.1
COORDINATES: similar to AA sequence:RefSeq:WP_003604572.1