Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Paenibacillus bovis sp. nov., isolated from raw yak (Bos grunniens) milk
Submitted (22-MAR-2017) State Key Laboratory of Dairy Biotechnology, Dairy Research Institute, Bright Dairy & Food Co., Bldg 2, No. 1518, West Jiangchang Road, Shanghai 200436, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP021170.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:32:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,828\nCDSs (total) :: 4,710\nGenes (coding) :: 4,660\nCDSs (with protein) :: 4,660\nGenes (RNA) :: 118\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 4\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 26 of 50\nPseudo Genes (incomplete) :: 22 of 50\nPseudo Genes (internal stop) :: 4 of 50\nPseudo Genes (multiple problems) :: 2 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017815212.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017815211.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037528.2
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_009336453.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF037521.2
COORDINATES: similar to AA sequence:RefSeq:WP_015250746.1
COORDINATES: similar to AA sequence:RefSeq:WP_017815120.1
COORDINATES: similar to AA sequence:RefSeq:WP_010345656.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0030436 - asexual sporulation [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0042173 - regulation of sporulation resulting in formation of a cellular spore [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012291664.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019420162.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013385988.1
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF022239.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001226076.1
COORDINATES: similar to AA sequence:RefSeq:WP_019379064.1
COORDINATES: similar to AA sequence:RefSeq:WP_019394150.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019688009.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF037419.2
COORDINATES: similar to AA sequence:RefSeq:WP_016424078.1
COORDINATES: similar to AA sequence:RefSeq:WP_019640552.1
COORDINATES: protein motif:HMM:NF020945.2
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF019021.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF025571.2
COORDINATES: protein motif:HMM:TIGR03177.1
COORDINATES: protein motif:HMM:NF019450.2
copper amine oxidase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019325.2
COORDINATES: protein motif:HMM:NF012271.2
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018976331.1
COORDINATES: protein motif:HMM:NF012372.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024698.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: protein motif:HMM:NF016362.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005827310.1
COORDINATES: similar to AA sequence:RefSeq:WP_009361864.1
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_017474165.1
NucA/NucB deoxyribonuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017691.2
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017815204.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: similar to AA sequence:RefSeq:WP_017815179.1
COORDINATES: similar to AA sequence:RefSeq:WP_017815176.1
COORDINATES: protein motif:HMM:NF017542.2
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009333756.1
arsinothricin resistance N-acetyltransferase ArsN1
COORDINATES: similar to AA sequence:RefSeq:WP_009225282.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333752.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017425595.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_017815168.1
COORDINATES: similar to AA sequence:RefSeq:WP_014112792.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014277677.1
COORDINATES: similar to AA sequence:RefSeq:WP_003268369.1
COORDINATES: similar to AA sequence:RefSeq:WP_009225274.1
COORDINATES: similar to AA sequence:RefSeq:WP_009225275.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504108.1
COORDINATES: similar to AA sequence:RefSeq:WP_013648893.1
COORDINATES: similar to AA sequence:RefSeq:WP_018976901.1
COORDINATES: similar to AA sequence:RefSeq:WP_001180616.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019007637.1
COORDINATES: similar to AA sequence:RefSeq:WP_019007368.1
COORDINATES: similar to AA sequence:RefSeq:WP_013082799.1
COORDINATES: protein motif:HMM:NF014874.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007128043.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017437717.1
COORDINATES: similar to AA sequence:RefSeq:WP_017815172.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392578.1
COORDINATES: similar to AA sequence:RefSeq:WP_018976285.1
COORDINATES: similar to AA sequence:RefSeq:WP_019381028.1
COORDINATES: similar to AA sequence:RefSeq:WP_000690665.1