Streptomyces formicae strain 1H-GS9 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Complete genome of Streptomyces formicae strain 1H-GS9 (DSM 100524)
Submitted (16-MAR-2021) Plant Metabolism and Metabolic Engineering, Center for Research in Agricultural Genomics (CRAG), Carrer de la Vall Moronta s/n, Cerdanyola del Valles, Barcelona 08193, Spain
REFSEQ INFORMATION: The reference sequence is identical to\nCP071873.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-MAR-2021\nAssembly Method :: Unicycler v. 0.4.8\nAssembly Name :: DSM 100524\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 402x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/07/2023 07:04:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,450\nCDSs (total) :: 7,359\nGenes (coding) :: 6,972\nCDSs (with protein) :: 6,972\nGenes (RNA) :: 91\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 387\nCDSs (without protein) :: 387\nPseudo Genes (ambiguous residues) :: 0 of 387\nPseudo Genes (frameshifted) :: 232 of 387\nPseudo Genes (incomplete) :: 221 of 387\nPseudo Genes (internal stop) :: 24 of 387\nPseudo Genes (multiple problems) :: 82 of 387\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004986821.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011030193.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018556833.1
COORDINATES: similar to AA sequence:RefSeq:WP_015507306.1
COORDINATES: similar to AA sequence:RefSeq:WP_019549324.1
COORDINATES: similar to AA sequence:RefSeq:WP_015035199.1
COORDINATES: similar to AA sequence:RefSeq:WP_009337503.1
COORDINATES: similar to AA sequence:RefSeq:WP_018892245.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018892246.1
COORDINATES: similar to AA sequence:RefSeq:WP_006140949.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018846971.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006125001.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006125000.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018892238.1
COORDINATES: similar to AA sequence:RefSeq:WP_018892240.1
COORDINATES: similar to AA sequence:RefSeq:WP_016577925.1