Acidithiobacillus ferrivorans isolate PRJEB5721 plasmid AFERRIp, complete sequence.
Bacteria; Pseudomonadota; Acidithiobacillia; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.
Submitted (22-MAR-2017) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France
REFSEQ INFORMATION: The reference sequence is identical to\nLT841306.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 01:15:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,574\nCDSs (total) :: 3,490\nGenes (coding) :: 3,428\nCDSs (with protein) :: 3,428\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 16 of 62\nPseudo Genes (incomplete) :: 52 of 62\nPseudo Genes (internal stop) :: 7 of 62\nPseudo Genes (multiple problems) :: 11 of 62\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004090909.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020853122.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014028266.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014027978.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014027979.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014003709.1
COORDINATES: similar to AA sequence:RefSeq:WP_010642721.1
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014028336.1
COORDINATES: similar to AA sequence:RefSeq:WP_010642724.1
COORDINATES: protein motif:HMM:NF015076.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_011146553.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013651620.1
COORDINATES: protein motif:HMM:NF014414.2
COORDINATES: similar to AA sequence:RefSeq:WP_012607422.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: protein motif:HMM:NF018152.2
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_019575084.1
COORDINATES: similar to AA sequence:RefSeq:WP_010637499.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_004091417.1
COORDINATES: similar to AA sequence:RefSeq:WP_013236410.1
COORDINATES: similar to AA sequence:RefSeq:WP_006464783.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245200.1
COORDINATES: similar to AA sequence:RefSeq:WP_012535933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253369.1
COORDINATES: similar to AA sequence:RefSeq:NP_490533.1
COORDINATES: similar to AA sequence:RefSeq:WP_043768368.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013237.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014028277.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_014003694.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003693.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003692.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012535861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012535862.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012535863.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012535864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012535865.1
COORDINATES: similar to AA sequence:RefSeq:WP_012535866.1
COORDINATES: similar to AA sequence:RefSeq:WP_012535867.1
COORDINATES: similar to AA sequence:RefSeq:WP_010642696.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012535873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537208.1