Plectropomus leopardus mitochondrion, complete genome.
type: Entry
definition: Plectropomus leopardus mitochondrion, complete genome.
sequence version: NC_008449.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_008449.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Plectropomus leopardus (leopard coralgrouper)
organism: Plectropomus leopardus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Plectropomus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from DQ101270.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16714
topology: circular
so has quality: SO_0000988
location: 1..16714
location: region:1-16714:1
RO_0002162: 160734

NC_008449
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genome of red coral grouper (Plectropomus maculatus)
author: Zhu, Z.Y.
author: Lo, L.C.
author: Yue, G.H.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (05-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Yue, G.
journal: Submitted (21-JUN-2005) Molecular Population Genomics, Temasek Life Sciences Lab, 1 Research Link, Singapore 117604, Singapore

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16714:1
position: 16714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16714:1:source
so part of: sequence
organism: Plectropomus leopardus
organelle: mitochondrion
mol type: genomic DNA

160734
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 160734
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1020
location: region:70-1020:1
so has part: feature:70-1020:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1020:1
position: 1020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1020:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Val
so part of: sequence
location: 1021..1091
location: region:1021-1091:1
so has part: feature:1021-1091:1:region

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1091:1
position: 1091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1021-1091:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 160734
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1092..2782
location: region:1092-2782:1
so has part: feature:1092-2782:1:region

position:1092:1
position: 1092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2782:1
position: 2782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1092-2782:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2783..2855
location: region:2783-2855:1
so has part: feature:2783-2855:1:region

position:2783:1
position: 2783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2855:1
position: 2855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2783-2855:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND1
so part of: sequence
location: 2856..3830
location: region:2856-3830:1
so has part: feature:2856-3830:1:exon
subclass of: SO_0000010

4363295
type: Gene
SIO_000068: ncbigene

position:2856:1
position: 2856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3830:1
position: 3830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2856-3830:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MISYLFTHIINPLAYIVPVLLAVAFLTLLERKVLGYMQMRKGPNIVGPYGLLQPIADGVKLFTKEPIRPSTSSPLLFLMTPMLALTLALTLWTPMPLPYPVADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLCTIIFTGGFTLQTFSTAQEGIWLILPAMPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLSATLFLGASHIPTFPELTAANLMTKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPIAFAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2856..3830
location: region:2856-3830:1
so has part: feature:2856-3830:1:exon

YP_783983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2856-3830:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Ile
so part of: sequence
location: 3835..3904
location: region:3835-3904:1
so has part: feature:3835-3904:1:region

position:3835:1
position: 3835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3904:1
position: 3904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3835-3904:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Gln
so part of: sequence
location: complement(3904..3974)
location: region:3904-3974:-1
so has part: feature:3904-3974:-1:region

position:3904:-1
position: 3904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3974:-1
position: 3974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3904-3974:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Met
so part of: sequence
location: 3975..4043
location: region:3975-4043:1
so has part: feature:3975-4043:1:region

position:3975:1
position: 3975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4043:1
position: 4043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3975-4043:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND2
so part of: sequence
location: 4044..5089
location: region:4044-5089:1
so has part: feature:4044-5089:1:exon
subclass of: SO_0000010

4363283
type: Gene
SIO_000068: ncbigene

position:4044:1
position: 4044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5089:1
position: 5089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4044-5089:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5088..5089,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYILAILVLSLGLGTALTLTSSHWLLAWMGLEINTLAIIPLMAQYHHPRAVEATTKYFFTQATAAAMLLFASTTNAWLTGQWEIQQMTHPFPTTMIIMALSLKIGLAPMHSWLPEVLQGLDLTTGLILSTWQKLGPFALLLQMQSAHPTILIILGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMMLILQFSPSLTLLTLMTYLVMTLSTFLVFKLNKATSINMLSISWTKTPTLTALAPLILLSLGGLPPLTGFMPKWLILQELAKQDLALTATLTALTALLSLFFYLRLSYAMALTLSPNNATGTTPWRLQNTQTTLLPALSTSATLLLLPLTPATISLLSL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4044..5089
location: region:4044-5089:1
so has part: feature:4044-5089:1:exon

YP_783984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4044-5089:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Trp
so part of: sequence
location: 5090..5160
location: region:5090-5160:1
so has part: feature:5090-5160:1:region

position:5090:1
position: 5090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5160:1
position: 5160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5090-5160:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Ala
so part of: sequence
location: 5162..5230
location: region:5162-5230:1
so has part: feature:5162-5230:1:region

position:5162:1
position: 5162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5230:1
position: 5230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5162-5230:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Asn
so part of: sequence
location: complement(5232..5304)
location: region:5232-5304:-1
so has part: feature:5232-5304:-1:region

position:5232:-1
position: 5232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5304:-1
position: 5304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5232-5304:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 160734
note: replication origin of L-strand
so part of: sequence
location: 5305..5340
location: region:5305-5340:1
so has part: feature:5305-5340:1:region

position:5305:1
position: 5305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5340:1
position: 5340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5305-5340:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Cys
so part of: sequence
location: complement(5341..5407)
location: region:5341-5407:-1
so has part: feature:5341-5407:-1:region

position:5341:-1
position: 5341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5407:-1
position: 5407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5341-5407:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Tyr
so part of: sequence
location: complement(5408..5477)
location: region:5408-5477:-1
so has part: feature:5408-5477:-1:region

position:5408:-1
position: 5408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5477:-1
position: 5477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5408-5477:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: COX1
so part of: sequence
location: 5479..7029
location: region:5479-7029:1
so has part: feature:5479-7029:1:exon
subclass of: SO_0000010

4363284
type: Gene
SIO_000068: ncbigene

position:5479:1
position: 5479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7029:1
position: 7029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5479-7029:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSVKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLFTGYSLHSTWTKIHFGIMFVGVNLTFFPKHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVIVFLFIIWEAFASKRKVLAVELTENNLEWLHGCPPPYHTFEEPAFVQVQSN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5479..7029
location: region:5479-7029:1
so has part: feature:5479-7029:1:exon

YP_783985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5479-7029:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7030..7100)
location: region:7030-7100:-1
so has part: feature:7030-7100:-1:region

position:7030:-1
position: 7030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7100:-1
position: 7100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7030-7100:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Asp
so part of: sequence
location: 7103..7176
location: region:7103-7176:1
so has part: feature:7103-7176:1:region

position:7103:1
position: 7103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7176:1
position: 7176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7103-7176:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: COX2
so part of: sequence
location: 7183..7873
location: region:7183-7873:1
so has part: feature:7183-7873:1:exon
subclass of: SO_0000010

4363285
type: Gene
SIO_000068: ncbigene

position:7183:1
position: 7183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7873:1
position: 7873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7183-7873:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7873,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGLQDAASPVMEELIHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYVLDSQEIEIIWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEELGFDSYMIPTQDLTPGQFRLLEADHRMVIPVDSPIRILVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFITARPGVFYGQCSEICGANHSFMPIVVEVVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7183..7873
location: region:7183-7873:1
so has part: feature:7183-7873:1:exon

YP_783986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7183-7873:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Lys
so part of: sequence
location: 7874..7949
location: region:7874-7949:1
so has part: feature:7874-7949:1:region

position:7874:1
position: 7874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7949:1
position: 7949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7874-7949:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ATP8
so part of: sequence
location: 7951..8122
location: region:7951-8122:1
so has part: feature:7951-8122:1:exon
subclass of: SO_0000010

4363286
type: Gene
SIO_000068: ncbigene

position:7951:1
position: 7951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8122:1
position: 8122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7951-8122:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ATP8
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8122,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLLPTPWFMTLIFAWVVFLGFVPTKVMSHSFSNEPTSVKPQKLEKDFLKLTMGLS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7951..8122
location: region:7951-8122:1
so has part: feature:7951-8122:1:exon

YP_783987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7951-8122:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ATP6
so part of: sequence
location: 8110..8793
location: region:8110-8793:1
so has part: feature:8110-8793:1:exon
subclass of: SO_0000010

4363287
type: Gene
SIO_000068: ncbigene

position:8110:1
position: 8110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8110-8793:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MGLSFFDQFMAPLYLGIPLIAMALVFPCLLFPTLTTRWLNNRLTTLQGLFINRFTHQLLSPLNVAGHKWALLFASLMLFLISINLLGLLPYTHTPTAQLSLNLGFAVPLWLATVTIGFRYQFNHALAHFLPEGTPNLLIPVLIIIETISLFIRPLALGVRLAANLTAGHLLIQLISTAVFVLLPLLPSVAIVTAMVLVLLTLLEIAVAMIQAYVFVLLLTLYLQENL
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8110..8793
location: region:8110-8793:1
so has part: feature:8110-8793:1:exon

YP_783988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8110-8793:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: COX3
so part of: sequence
location: 8793..9578
location: region:8793-9578:1
so has part: feature:8793-9578:1:exon
subclass of: SO_0000010

4363288
type: Gene
SIO_000068: ncbigene

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9578:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: COX3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFNSTTLMVLGTILLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKEAIQSLAMTILLGLYFTFLQALEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVCFFRQIQFHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8793..9578
location: region:8793-9578:1
so has part: feature:8793-9578:1:exon

YP_783989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9578:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Gly
so part of: sequence
location: 9578..9647
location: region:9578-9647:1
so has part: feature:9578-9647:1:region

position:9647:1
position: 9647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9578-9647:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND3
so part of: sequence
location: 9648..9996
location: region:9648-9996:1
so has part: feature:9648-9996:1:exon
subclass of: SO_0000010

4363289
type: Gene
SIO_000068: ncbigene

position:9648:1
position: 9648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9996:1
position: 9996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9996:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9996,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLLTTIIIITLGLSLVLIIVSFWLPQMNPDYEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLATPLLTFLWASAVLALLTLGLVYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9648..9996
location: region:9648-9996:1
so has part: feature:9648-9996:1:exon

YP_783990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9648-9996:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Arg
so part of: sequence
location: 9997..10065
location: region:9997-10065:1
so has part: feature:9997-10065:1:region

position:9997:1
position: 9997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10065:1
position: 10065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9997-10065:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND4L
so part of: sequence
location: 10066..10362
location: region:10066-10362:1
so has part: feature:10066-10362:1:exon
subclass of: SO_0000010

4363290
type: Gene
SIO_000068: ncbigene

position:10066:1
position: 10066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10362:1
position: 10362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10066-10362:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFAFSSAFILGLTGLAFHRTHLLSALLCLEGMMLSLFIALSLWTLQLDSTSFSAAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLSLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10066..10362
location: region:10066-10362:1
so has part: feature:10066-10362:1:exon

YP_783991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10066-10362:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND4
so part of: sequence
location: 10356..11736
location: region:10356-11736:1
so has part: feature:10356-11736:1:exon
subclass of: SO_0000010

4363291
type: Gene
SIO_000068: ncbigene

position:10356:1
position: 10356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11736:1
position: 11736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10356-11736:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11736,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLVPTTWLTPAKWLWPTTLTHSLLIALASLSWLNYSSETGWTSLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTAREPISRQRMYITLLTSLQIFLIMAFSATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLVLQNHSGTLSLLTLPYTCPLQLSMNTDKLWWVGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMILVLDPLTKELGYPFIILALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVLPLMTAWWFIASLANLALPPLPNLMAELMIIVSLFNWSWWTLILTGAGTLITASYSLYMFLVTQRGPLPSHIIALAPSHSREHLLIALHLLPLILIILKPELIWGWAG
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10356..11736
location: region:10356-11736:1
so has part: feature:10356-11736:1:exon

YP_783992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10356-11736:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-His
so part of: sequence
location: 11737..11805
location: region:11737-11805:1
so has part: feature:11737-11805:1:region

position:11737:1
position: 11737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11805:1
position: 11805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11737-11805:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11816..11889
location: region:11816-11889:1
so has part: feature:11816-11889:1:region

position:11816:1
position: 11816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11889:1
position: 11889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11816-11889:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11890..11962
location: region:11890-11962:1
so has part: feature:11890-11962:1:region

position:11890:1
position: 11890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11962:1
position: 11962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11890-11962:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND5
so part of: sequence
location: 11963..13783
location: region:11963-13783:1
so has part: feature:11963-13783:1:exon
subclass of: SO_0000010

4363292
type: Gene
SIO_000068: ncbigene

position:11963:1
position: 11963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13783:1
position: 13783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11963-13783:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MYSTSLLMSSSFIIIIILLFYPIMSTLTPAPLPKNWALSHVKTAVKSAFFVSLLPLFLFLNEGAETIITSWSWMNTMTFDVNISFKFDHYSIIFTPIALYVTWSWYMHADPYMNRFFKYLLIFLIAMIILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVVYNRVGDVGLILAMAWMATHLNSWEIQQMFATAKDFDLTLPLLGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRLSPLLENNPTALTICLCLGALTTMFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLTPFTSTCLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLSAWALILTLLATSFTAIYSLRVIFFVSMGHPRFNSLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPLKTPVMSMPFMLKLAALTVTIMGLLIALDLASLTSKQFKPTPRLTLHHFSNMLGFFPMIIHRFFPKLNLTLGQAIAGQMVDQTWLEKVGPKAAASINVPLITTTSNAQQGMIKTYLALFLLTLALTTILFID
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11963..13783
location: region:11963-13783:1
so has part: feature:11963-13783:1:exon

YP_783993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11963-13783:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: ND6
so part of: sequence
location: complement(13780..14295)
location: region:13780-14295:-1
so has part: feature:13780-14295:-1:exon
subclass of: SO_0000010

4363293
type: Gene
SIO_000068: ncbigene

position:13780:-1
position: 13780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14295:-1
position: 14295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13780-14295:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MLSLLTFLMVGFLSGMIAVASNPSPFYAALGVMSAAGFGCALLATYGACFLALVLFLIYLGGMLVVFAYSAALASEPHPTTWGERAVGSTVVIYISIVCTFAYLAMPYWYGSAVSSTDGSEWYGLFAVEGCFNMFHTGGGMLVLSAWVLLLTLFVVLELTRGLNRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13780..14295)
location: region:13780-14295:-1
so has part: feature:13780-14295:-1:exon

YP_783994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13780-14295:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Glu
so part of: sequence
location: 14296..14364
location: region:14296-14364:1
so has part: feature:14296-14364:1:region

position:14296:1
position: 14296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14364:1
position: 14364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14296-14364:1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 160734
gene: CYTB
so part of: sequence
location: 14367..15507
location: region:14367-15507:1
so has part: feature:14367-15507:1:exon
subclass of: SO_0000010

4363294
type: Gene
SIO_000068: ncbigene

position:14367:1
position: 14367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15507:1
position: 15507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14367-15507:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 160734
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15507,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLLKIANDALVGLPAPSNISVWWNFGSLLGLCLITQLLTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRGLYYGSFLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAMTLLHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAAMLIALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPVLHTSKQRALTFRPLTQFLFWTLIADVIILTWIGGMPVEHPFIIIGQIASLLYFSLFLILMPLAGWIENKMLRLT
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14367..15507
location: region:14367-15507:1
so has part: feature:14367-15507:1:exon

YP_783995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14367-15507:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Thr
so part of: sequence
location: 15508..15579
location: region:15508-15579:1
so has part: feature:15508-15579:1:region

position:15508:1
position: 15508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15579:1
position: 15579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15508-15579:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 160734
product: tRNA-Pro
so part of: sequence
location: 15579..15649
location: region:15579-15649:1
so has part: feature:15579-15649:1:region

position:15649:1
position: 15649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15579-15649:1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 160734
so part of: sequence
location: 15650..16714
location: region:15650-16714:1
so has part: feature:15650-16714:1:region

position:15650:1
position: 15650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15650-16714:1:region