Loigolactobacillus bifermentans strain LB003 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus.
Genome sequencing of Lactobacillus bifermentans
Submitted (04-NOV-2019) College of Health Science, Korea University, Anam-ro 145, Seoul 02841, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP045874.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. v2.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 284.03x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 01:33:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,233\nCDSs (total) :: 3,145\nGenes (coding) :: 3,102\nCDSs (with protein) :: 3,102\nGenes (RNA) :: 88\nrRNAs :: 5, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 6, 5 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 14 of 43\nPseudo Genes (incomplete) :: 25 of 43\nPseudo Genes (internal stop) :: 9 of 43\nPseudo Genes (multiple problems) :: 5 of 43\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015638790.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003680947.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS30-like element ISLpl1 family transposase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013356270.1
COORDINATES: similar to AA sequence:RefSeq:WP_016527414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003649841.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
COORDINATES: similar to AA sequence:RefSeq:WP_011373852.1
IS30-like element ISLsa1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015638851.1
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: similar to AA sequence:RefSeq:WP_010498527.1
GO:0070007 - glutamic-type endopeptidase activity [Evidence IEA]
PrsW family glutamic-type intramembrane protease
COORDINATES: similar to AA sequence:RefSeq:WP_003717181.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_011222049.1
COORDINATES: similar to AA sequence:RefSeq:WP_003582117.1
COORDINATES: similar to AA sequence:RefSeq:WP_003582114.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_016368213.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003682896.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721068.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_004563097.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010373596.1
COORDINATES: similar to AA sequence:RefSeq:WP_017369030.1
COORDINATES: similar to AA sequence:RefSeq:WP_003679562.1
COORDINATES: protein motif:HMM:NF012948.2
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein