Agrobacterium larrymoorei strain CFBP5477 plasmid pAlCFBP5477, complete sequence.
Agrobacterium larrymoorei (Rhizobium larrymoorei)
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
Complete genome sequence of Agrobacterium larrymoorei CFBP5477
Submitted (01-MAY-2023) Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Taipei 115201, Taiwan
Submitted (25-APR-2019) Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Taipei 11529, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP124735.1.\nBacteria and source DNA available from Erh-Min Lai.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.9b\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 193.4x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 07:02:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,797\nCDSs (total) :: 4,720\nGenes (coding) :: 4,670\nCDSs (with protein) :: 4,670\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 21 of 50\nPseudo Genes (incomplete) :: 32 of 50\nPseudo Genes (internal stop) :: 6 of 50\nPseudo Genes (multiple problems) :: 8 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006313548.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006699339.1
COORDINATES: similar to AA sequence:RefSeq:WP_013637019.1
COORDINATES: protein motif:HMM:NF012970.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003510192.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015886741.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018236699.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015886739.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236697.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF040572.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568713.1
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480491.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018444559.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068288.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328145.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020409995.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018068505.1
COORDINATES: protein motif:HMM:NF025292.2
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012763419.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516971.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012706577.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517387.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020023657.1
COORDINATES: similar to AA sequence:RefSeq:WP_005460661.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017802698.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014538155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385688.1
Fe(3+) dicitrate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007703771.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011580335.1
COORDINATES: similar to AA sequence:RefSeq:WP_007818376.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007772297.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018099332.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011580339.1
COORDINATES: similar to AA sequence:RefSeq:WP_014765779.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003535739.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099328.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612137.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF015692.2
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF025387.2
This protein contains a domain related to Tuberculosis Necrotizing Toxin, which is the C-terminal effector domain of outer membrane channel protein CpnT, and which has a lethal NAD+-glycohydrolase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
glycohydrolase toxin TNT-related protein
COORDINATES: protein motif:HMM:NF025047.2
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: similar to AA sequence:RefSeq:WP_015916409.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_004129282.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_012654353.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0008888 - glycerol dehydrogenase [NAD+] activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654352.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654351.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654350.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654349.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011296167.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654347.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654346.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654345.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654344.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_036567386.1
COORDINATES: similar to AA sequence:RefSeq:WP_002964452.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654341.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015668392.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809282.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997134.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997135.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015925.2
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007773908.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019015427.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452688.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773914.1
COORDINATES: similar to AA sequence:RefSeq:WP_008883631.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452684.1
COORDINATES: protein motif:HMM:NF013206.2
COORDINATES: protein motif:HMM:NF016873.2
COORDINATES: similar to AA sequence:RefSeq:WP_007438067.1
COORDINATES: protein motif:HMM:NF024989.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010683562.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011384723.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018303023.1
COORDINATES: similar to AA sequence:RefSeq:WP_011384726.1
COORDINATES: similar to AA sequence:RefSeq:WP_012046087.1
COORDINATES: protein motif:HMM:NF008352.0
COORDINATES: similar to AA sequence:RefSeq:WP_012203808.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020226703.1
COORDINATES: similar to AA sequence:RefSeq:WP_010684733.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063915.1
COORDINATES: similar to AA sequence:RefSeq:WP_013396015.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF027439.2
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012334209.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_006156695.1
COORDINATES: similar to AA sequence:RefSeq:WP_015452199.1
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009830342.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013689078.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329077.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF006757.0
COORDINATES: similar to AA sequence:RefSeq:WP_009634932.1
COORDINATES: similar to AA sequence:RefSeq:WP_020008918.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973970.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004431084.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762392.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762391.1
COORDINATES: similar to AA sequence:RefSeq:WP_020008923.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812748.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241790.1
COORDINATES: similar to AA sequence:RefSeq:WP_003564579.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007698148.1
COORDINATES: similar to AA sequence:RefSeq:WP_007825894.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845209.1
COORDINATES: similar to AA sequence:RefSeq:WP_018184315.1
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007799376.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318455.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016735231.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007822024.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565813.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007537461.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007694604.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125789.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735238.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652766.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901800.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653881.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632562.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858154.1
COORDINATES: similar to AA sequence:RefSeq:WP_007766633.1
COORDINATES: similar to AA sequence:RefSeq:WP_007766630.1
COORDINATES: similar to AA sequence:RefSeq:WP_015731345.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858157.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858158.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858162.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018897389.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918617.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003504255.1
2-dehydropantoate 2-reductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020813052.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006698373.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003518073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003521832.1
COORDINATES: similar to AA sequence:RefSeq:WP_003521833.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504240.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809093.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020809092.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516845.1
COORDINATES: similar to AA sequence:RefSeq:WP_003531901.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003521774.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761128.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896850.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496342.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015918459.1
COORDINATES: similar to AA sequence:RefSeq:WP_017274377.1
COORDINATES: similar to AA sequence:RefSeq:WP_006725385.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012649967.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003051367.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007682761.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006724930.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:YP_002517625.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018898097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014075302.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565773.1
COORDINATES: similar to AA sequence:RefSeq:WP_019401507.1
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003517809.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015918629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428395.1
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: similar to AA sequence:RefSeq:WP_010686322.1
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019015440.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321290.1
COORDINATES: similar to AA sequence:RefSeq:WP_007435576.1
COORDINATES: similar to AA sequence:RefSeq:WP_006615667.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315994.1
COORDINATES: similar to AA sequence:RefSeq:WP_019652724.1
COORDINATES: similar to AA sequence:RefSeq:WP_009026955.1
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007880322.1
COORDINATES: similar to AA sequence:RefSeq:WP_013080110.1
COORDINATES: similar to AA sequence:RefSeq:WP_010446387.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_018425804.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018425806.1
COORDINATES: similar to AA sequence:RefSeq:WP_013528138.1
COORDINATES: similar to AA sequence:RefSeq:WP_006097830.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245810.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014766419.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517901.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566468.1
COORDINATES: similar to AA sequence:RefSeq:WP_006311870.1
COORDINATES: similar to AA sequence:RefSeq:WP_003522677.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_003508131.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812558.1
COORDINATES: similar to AA sequence:RefSeq:WP_003508126.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020812560.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003517914.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972787.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003517922.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_020812567.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_006937140.1
COORDINATES: similar to AA sequence:RefSeq:WP_012045506.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018494338.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494337.1
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_018494336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018642703.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773167.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773166.1
COORDINATES: similar to AA sequence:RefSeq:WP_017774909.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013006399.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF015431.2
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007955376.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534363.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534364.1
COORDINATES: similar to AA sequence:RefSeq:WP_015476429.1
NADH:flavin oxidoreductase/NADH oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004470621.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330621.1
COORDINATES: similar to AA sequence:RefSeq:WP_016851640.1
COORDINATES: protein motif:HMM:NF004829.0
COORDINATES: similar to AA sequence:RefSeq:WP_012649181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008024758.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013845633.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337063.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479943.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495505.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967930.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756521.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658901.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761561.1
COORDINATES: similar to AA sequence:RefSeq:WP_003507081.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018324281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007751332.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498341.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015917864.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973527.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823296.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590696.1
GO:0016020 - membrane [Evidence IEA]; GO:0042597 - periplasmic space [Evidence IEA]
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_007634096.1
COORDINATES: similar to AA sequence:RefSeq:WP_020811384.1
COORDINATES: similar to AA sequence:RefSeq:WP_020011879.1
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF024832.2
GO:0008754 - O antigen ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_007823270.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115011.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011426471.1
transglutaminase-like cysteine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_003588799.1
ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:NF019501.2
COORDINATES: similar to AA sequence:RefSeq:WP_003562306.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013077983.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236792.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974125.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009901.1
COORDINATES: similar to AA sequence:RefSeq:WP_006697918.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003521641.1
COORDINATES: similar to AA sequence:RefSeq:WP_006697919.1
COORDINATES: similar to AA sequence:RefSeq:WP_006697920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480529.1
COORDINATES: similar to AA sequence:RefSeq:WP_006311376.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007755504.1
COORDINATES: protein motif:HMM:NF012894.2
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016999.2
COORDINATES: similar to AA sequence:RefSeq:WP_012709097.1
antibiotic biosynthesis monooxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013169094.1
COORDINATES: similar to AA sequence:RefSeq:WP_004003382.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709102.1
COORDINATES: similar to AA sequence:RefSeq:WP_019994809.1
GO:0015137 - citrate transmembrane transporter activity [Evidence IEA]
GO:0015746 - citrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012247770.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012247769.1
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012247768.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF021778.2
GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_018992505.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017480298.1
COORDINATES: similar to AA sequence:RefSeq:WP_005451145.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003531337.1
COORDINATES: similar to AA sequence:RefSeq:WP_013165849.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024921.2
COORDINATES: similar to AA sequence:RefSeq:WP_015065151.1
GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]
2-methylaconitate cis-trans isomerase PrpF
COORDINATES: similar to AA sequence:RefSeq:WP_016448229.1
transporter substrate-binding domain-containing protein