Enterococcus gilvus strain CR1 plasmid pCR1C, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.
Complete Genome Sequence of Carotenoid-producing Enterococcus gilvus CR1 Isolated from Raw Cow's Milk
Submitted (11-JUL-2018) Institute of Livestock and Grassland Science, NARO, National Agriculture and Food Research Organization, 2 Ikenodai, Tsukuba 305-0901, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP030935.1.\nBacteria and source DNA available from NILGS, 2 Ikenodai, Tsukuba,\nIbaraki, Japan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. Ver.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1058.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/18/2023 04:51:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,860\nCDSs (total) :: 3,772\nGenes (coding) :: 3,728\nCDSs (with protein) :: 3,728\nGenes (RNA) :: 88\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 23 of 44\nPseudo Genes (incomplete) :: 21 of 44\nPseudo Genes (internal stop) :: 12 of 44\nPseudo Genes (multiple problems) :: 10 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014601544.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010750093.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016178407.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016178415.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016178416.1
COORDINATES: similar to AA sequence:RefSeq:WP_010742387.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_012477736.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010743045.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025063.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005470367.1
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003728509.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002308079.1
COORDINATES: similar to AA sequence:RefSeq:WP_002396210.1
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002344896.1
COORDINATES: similar to AA sequence:RefSeq:WP_002322677.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782450.1
COORDINATES: similar to AA sequence:RefSeq:WP_002300091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782448.1
COORDINATES: protein motif:HMM:NF018653.2
COORDINATES: similar to AA sequence:RefSeq:WP_016610881.1
COORDINATES: similar to AA sequence:RefSeq:WP_002385596.1
COORDINATES: similar to AA sequence:RefSeq:WP_016620677.1
COORDINATES: similar to AA sequence:RefSeq:WP_010778498.1
COORDINATES: similar to AA sequence:RefSeq:WP_017371283.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611172.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010742451.1
COORDINATES: similar to AA sequence:RefSeq:WP_002329851.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016610020.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016250207.1
COORDINATES: similar to AA sequence:RefSeq:WP_010742447.1
SpaA isopeptide-forming pilin-related protein
COORDINATES: protein motif:HMM:TIGR01076.1
COORDINATES: similar to AA sequence:RefSeq:WP_003030381.1
COORDINATES: similar to AA sequence:RefSeq:WP_017371159.1
COORDINATES: similar to AA sequence:RefSeq:WP_002405105.1
COORDINATES: protein motif:HMM:NF037025.2
COORDINATES: similar to AA sequence:RefSeq:WP_002316069.1
COORDINATES: similar to AA sequence:RefSeq:WP_002370353.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_020006635.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003136893.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002367696.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_010742430.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002311028.1
COORDINATES: similar to AA sequence:RefSeq:WP_002341371.1
COORDINATES: similar to AA sequence:RefSeq:WP_010749154.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002318452.1
iron export ABC transporter permease subunit FetB
COORDINATES: similar to AA sequence:RefSeq:WP_002295591.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000108743.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002341321.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003706982.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_011476586.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002293763.1
COORDINATES: similar to AA sequence:RefSeq:WP_002371076.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002292162.1
IS6-like element IS1216 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014024690.1
COORDINATES: similar to AA sequence:RefSeq:WP_016178023.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation:proton antiporter-2 (CPA2) family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005234905.1
GO:0015379 - potassium:chloride symporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010744060.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010738921.1
arsenite efflux transporter metallochaperone ArsD