Yersinia rochesterensis strain ATCC BAA-2637 plasmid pUnnamed2.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia.
Yersinia occitanica is a later heterotypic synonym of Yersinia kristensenii subsp. rochesterensis and elevation of Yersinia kristensenii subsp. rochesterensis to species status
Yersinia kristensenii subsp. rochesterensis subsp. nov., isolated from human feces
Submitted (19-SEP-2018) Laboratory Medicine and Pathology, Division of Clinical Microbiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP032484.1.\nGenome assembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. JAN-2014\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:57:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,024\nCDSs (total) :: 3,899\nGenes (coding) :: 3,821\nCDSs (with protein) :: 3,821\nGenes (RNA) :: 125\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 23\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 31 of 78\nPseudo Genes (incomplete) :: 61 of 78\nPseudo Genes (internal stop) :: 17 of 78\nPseudo Genes (multiple problems) :: 25 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
type strain of Yersinia kristensenii subsp. rochesterensis
COORDINATES: protein motif:HMM:NF016710.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000957083.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
MobC family plasmid mobilization relaxosome protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016246513.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538403.1
MbeD family mobilization/exclusion protein
COORDINATES: similar to AA sequence:RefSeq:WP_001086853.1