Latilactobacillus sakei strain CBA3614 plasmid unnamed2, complete sequence.
type: Entry
definition: Latilactobacillus sakei strain CBA3614 plasmid unnamed2, complete sequence.
sequence version: NZ_CP046039.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP046039.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13258981
keyword: RefSeq
source: Latilactobacillus sakei
organism: Latilactobacillus sakei
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Latilactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP046039.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 541.08x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:02:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,027\nCDSs (total) :: 1,937\nGenes (coding) :: 1,917\nCDSs (with protein) :: 1,917\nGenes (RNA) :: 90\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 10 of 20\nPseudo Genes (incomplete) :: 9 of 20\nPseudo Genes (internal stop) :: 3 of 20\nPseudo Genes (multiple problems) :: 2 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20312
topology: circular
so has quality: SO_0000988
location: 1..20312
location: region:1-20312:1
RO_0002162: 1599

NZ_CP046039
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13258981
type: BioSample
SIO_000068: biosample

1
title: Genomic analysis of Lactobacillus sakei CBA3614
author: Roh, S.W.
journal: Unpublished

2
title: Direct Submission
author: Roh, S.W.
journal: Submitted (12-NOV-2019) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20312:1
position: 20312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20312:1:source
so part of: sequence
organism: Latilactobacillus sakei
mol type: genomic DNA
strain: CBA3614
isolation source: kimchi
plasmid: unnamed2
country: South Korea

1599
type: Taxonomy
SIO_000068: taxonomy

GJ664_RS09960
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09960
old locus tag: GJ664_09960
so part of: sequence
location: join(20237..20312,1..386)
location: region:1-20312:1
so has part: feature:20237-20312:1:exon
so has part: feature:1-386:1:exon
subclass of: SO_0000010

57134055
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:20237-20312:1:exon

position:20237:1
position: 20237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-386:1:exon

position:386:1
position: 386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GJ664_RS09960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09960
old locus tag: GJ664_09960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526793.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATILLFLGLNFWSNQLDDLHIQDVKIYNTFFAMENGKPTFYLYGKLKPTFASYSGGAFTQYNNSNGGNYGWNTSKNNVYIDGQQTHSPFGSKEVVFRIKSDSKEGLTLLNQNLYLTDHHHHKIKIYNAQTKTQPYSIDQKDTQKFIKQNKLH
SIO_010081: GJ664_RS09960
subclass of: SO_0000673
so part of: GJ664_RS09960
location: join(20237..20312,1..386)
location: region:1-20312:1
so has part: feature:20237-20312:1:exon
so has part: feature:1-386:1:exon

WP_062689907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20237-20312:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-386:1:exon

GJ664_RS09965
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09965
old locus tag: GJ664_09965
so part of: sequence
location: complement(745..1083)
location: region:745-1083:-1
so has part: feature:745-1083:-1:exon
subclass of: SO_0000010

57134056
type: Gene
SIO_000068: ncbigene

position:745:-1
position: 745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1083:-1
position: 1083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:745-1083:-1:exon

GJ664_RS09965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09965
old locus tag: GJ664_09965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014975082.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTELKYLELPPCPVATTALLIGDHWKILIIRELLNGTKRFGELTKGLDGISNKVLSQHLKVMESRGLIERRVYAEVPVKVEYSLTDIGWKLKPLIHEMWQWGELYKSIEANK
SIO_010081: GJ664_RS09965
subclass of: SO_0000673
so part of: GJ664_RS09965
location: complement(745..1083)
location: region:745-1083:-1
so has part: feature:745-1083:-1:exon

WP_010372429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:745-1083:-1:exon

GJ664_RS09970
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09970
old locus tag: GJ664_09970
so part of: sequence
location: 1210..1827
location: region:1210-1827:1
so has part: feature:1210-1827:1:exon
subclass of: SO_0000010

57134057
type: Gene
SIO_000068: ncbigene

position:1210:1
position: 1210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1827:1
position: 1827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1210-1827:1:exon

GJ664_RS09970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09970
old locus tag: GJ664_09970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H-binding protein
translation: MNIGIIGATGKLGNLLVEKLTNRNEKPTAIVRNKSKLTTNIPTIEKDIFDLTTEDIKDFDVVVNAFNAPMEDPEQFITSTEHLISILQGTNTRLVFAGGAGVLLVDENTMLVDTPEVPAEFKPIAEAEVTAFKALAEVQDFDWTYMAPPAMMEFDAPHTGKHSFSGNKLGVNADGKSFISYSDYADAFVEQIFNPENHAIVGVYA
SIO_010081: GJ664_RS09970
subclass of: SO_0000673
so part of: GJ664_RS09970
location: 1210..1827
location: region:1210-1827:1
so has part: feature:1210-1827:1:exon

WP_010372430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1210-1827:1:exon

GJ664_RS09975
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09975
old locus tag: GJ664_09975
so part of: sequence
location: 1982..2911
location: region:1982-2911:1
so has part: feature:1982-2911:1:exon
subclass of: SO_0000010

57134058
type: Gene
SIO_000068: ncbigene

position:1982:1
position: 1982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2911:1
position: 2911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1982-2911:1:exon

GJ664_RS09975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09975
old locus tag: GJ664_09975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
translation: MSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALNKFLATFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
SIO_010081: GJ664_RS09975
subclass of: SO_0000673
so part of: GJ664_RS09975
location: 1982..2911
location: region:1982-2911:1
so has part: feature:1982-2911:1:exon

WP_099713067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1982-2911:1:exon

GJ664_RS09980
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09980
old locus tag: GJ664_09980
so part of: sequence
location: 3288..3761
location: region:3288-3761:1
so has part: feature:3288-3761:1:exon
subclass of: SO_0000010

57134059
type: Gene
SIO_000068: ncbigene

position:3288:1
position: 3288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3761:1
position: 3761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3288-3761:1:exon

GJ664_RS09980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09980
old locus tag: GJ664_09980
inference: COORDINATES: protein motif:HMM:NF012870.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
translation: MKKLDDLSGVLATDITYTQLMNREWVYLATVYDPEKRRVVSYGLSPEMTKEFATSVVVKALRANGKPNMIHSDMGSQYTSSLFEGTLQNSGIHHSYSRKGHPYDNARIKSFHSLIKREMIYHEEYRTIDDVRVSVEWYVNWYNNSHINSRTDWLQTA
SIO_010081: GJ664_RS09980
subclass of: SO_0000673
so part of: GJ664_RS09980
location: 3288..3761
location: region:3288-3761:1
so has part: feature:3288-3761:1:exon

WP_172412947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3288-3761:1:exon

GJ664_RS09985
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09985
old locus tag: GJ664_09985
so part of: sequence
location: complement(3932..4234)
location: region:3932-4234:-1
so has part: feature:3932-4234:-1:exon
subclass of: SO_0000010

57134060
type: Gene
SIO_000068: ncbigene

position:3932:-1
position: 3932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4234:-1
position: 4234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3932-4234:-1:exon

GJ664_RS09985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09985
old locus tag: GJ664_09985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQIKQTKSFERELKKLVKKHFPITVLKPCLEAIVEQDVLVLKQIKDHALKGNWRGYREFHPARYGNYGKNYDNWIVIYQLDHDELILLLVATGSHEILNQ
SIO_010081: GJ664_RS09985
subclass of: SO_0000673
so part of: GJ664_RS09985
location: complement(3932..4234)
location: region:3932-4234:-1
so has part: feature:3932-4234:-1:exon

WP_005917927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3932-4234:-1:exon

GJ664_RS09990
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09990
old locus tag: GJ664_09990
so part of: sequence
location: complement(4224..4502)
location: region:4224-4502:-1
so has part: feature:4224-4502:-1:exon
subclass of: SO_0000010

57134061
type: Gene
SIO_000068: ncbigene

position:4224:-1
position: 4224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4502:-1
position: 4502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4224-4502:-1:exon

GJ664_RS09990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09990
old locus tag: GJ664_09990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSNTIIKNKTISTRVTPDISERAKANLAKQGLTVSEYIRLSLVKAANNEVRLVSFLDSPEALAAKKEAETGQVKNIGSLTDFEDWIDKLDAN
SIO_010081: GJ664_RS09990
subclass of: SO_0000673
so part of: GJ664_RS09990
location: complement(4224..4502)
location: region:4224-4502:-1
so has part: feature:4224-4502:-1:exon

WP_003625288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4224-4502:-1:exon

GJ664_RS09995
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS09995
old locus tag: GJ664_09995
so part of: sequence
location: 4606..5193
location: region:4606-5193:1
so has part: feature:4606-5193:1:exon
subclass of: SO_0000010

57134062
type: Gene
SIO_000068: ncbigene

position:4606:1
position: 4606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5193:1
position: 5193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4606-5193:1:exon

GJ664_RS09995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS09995
old locus tag: GJ664_09995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQIVLPIKDSNVLKEVQDTLLNNFKAGQRNYTIFQVGKATLLRVSDVMCLKQADIFNPDGAIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLFDHKLESEWLFPSIQHPERHITEKQFYKIMSKVGDLLSINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTETMLDQIDFG
SIO_010081: GJ664_RS09995
subclass of: SO_0000673
so part of: GJ664_RS09995
location: 4606..5193
location: region:4606-5193:1
so has part: feature:4606-5193:1:exon

WP_120247235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4606-5193:1:exon

GJ664_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10000
old locus tag: GJ664_10000
so part of: sequence
location: 5621..5833
location: region:5621-5833:1
so has part: feature:5621-5833:1:exon
subclass of: SO_0000010

57134063
type: Gene
SIO_000068: ncbigene

position:5621:1
position: 5621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5833:1
position: 5833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5621-5833:1:exon

GJ664_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10000
old locus tag: GJ664_10000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGVTQMDEKKVLKPIDEMLADPWQVDIQELFEAFVNEPDEIKQNLYNSLYTYILQKRQEDIINRPGFVI
SIO_010081: GJ664_RS10000
subclass of: SO_0000673
so part of: GJ664_RS10000
location: 5621..5833
location: region:5621-5833:1
so has part: feature:5621-5833:1:exon

WP_195759368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5621-5833:1:exon

GJ664_RS10005
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10005
old locus tag: GJ664_10005
so part of: sequence
location: 6338..7273
location: region:6338-7273:1
so has part: feature:6338-7273:1:exon
subclass of: SO_0000010

57134064
type: Gene
SIO_000068: ncbigene

position:6338:1
position: 6338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7273:1
position: 7273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6338-7273:1:exon

GJ664_RS10005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10005
old locus tag: GJ664_10005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNELVKYDPELNTIPLRRFTPVEMNLFFSVVSRMRDKGDDTVRFTFDQLKELSAYKPTANNRFIDDIQSTYQKILGLRFGSRSKDGLDREMFVMFTRFEIKGSAEVPYVDIQIYPKALKLLNNLESWVRYALAEFRDLKSSYAKTMFRLLKQFRTTGYAYFSKSDFFELLDIPQSYWNKPANVESRVIQPIKEELTPLFRGLAIRKKYGKGRGKPVIGYSFTWKSEKKNADDFSQGQFQDERQKLFNIQHNGELTEQEKWRAIDKVKGLTLGSTEKQALAEKQAEHDKKIRDQARKEALAELRKGFGNHA
SIO_010081: GJ664_RS10005
subclass of: SO_0000673
so part of: GJ664_RS10005
location: 6338..7273
location: region:6338-7273:1
so has part: feature:6338-7273:1:exon

WP_099947820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6338-7273:1:exon

GJ664_RS10010
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10010
old locus tag: GJ664_10010
so part of: sequence
location: 7266..7775
location: region:7266-7775:1
so has part: feature:7266-7775:1:exon
subclass of: SO_0000010

57134065
type: Gene
SIO_000068: ncbigene

position:7266:1
position: 7266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7775:1
position: 7775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7266-7775:1:exon

GJ664_RS10010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10010
old locus tag: GJ664_10010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007745771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MPKTIRELADELGVSKQRIQQIIAKLSASKTPNKEGNRYVLNAQDVKNIKDLMGFDNDKSSTSESTNRLVDYDVYLDVIDSIKEKDEQIKILLEVQKQTQNLLDQQQRLALQDKQLLEEYKAEIKDLKALTMAPHDDGEKEVTSDKQPEPENSTPESQPKPKKWWRFGK
SIO_010081: GJ664_RS10010
subclass of: SO_0000673
so part of: GJ664_RS10010
location: 7266..7775
location: region:7266-7775:1
so has part: feature:7266-7775:1:exon

WP_035147660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7266-7775:1:exon

GJ664_RS10015
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10015
old locus tag: GJ664_10015
so part of: sequence
location: 7808..10780
location: region:7808-10780:1
so has part: feature:7808-10780:1:exon
subclass of: SO_0000010

57134066
type: Gene
SIO_000068: ncbigene

position:7808:1
position: 7808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10780:1
position: 10780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7808-10780:1:exon

GJ664_RS10015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10015
old locus tag: GJ664_10015
EC number: 3.1.21.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010010578.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease subunit R
translation: MAEDKFEQAVIDKLKSEGWEYLTDYSGVTVDRLYDHWRDILNANNRKRLEDTPLSDNEFKQVKLELTKNKTPYDAQLMLAGAGGVGTVPLNRDDGTQLELEIFYGDEVAGGHSRYEVVNQITFTDLATSLSSKRRIDIMLLINGLPVAHIEEKDESLQNQWSAFEQFQKYDGDGMYTGLFSFVQVQFVLSQNSAHYFARPKNSDSYNRDFAFGWRDDAGKDVTNTMTFIHEVMGIPALHRLVTVNMIPDAANDNLMVMRSYQIQATRQILDRMREMDQNGLVEKEGGYVWHTTGSGKTVTSFKVAQLLASRPRVEDVLFIVDRVDLVNQTYENFKSFAYKTFENRIQVVNGSELKRALKHDNTAHIYLITVQGLDKAIKSGLASNKRMVILMDEAHRSASGDAVSRIKQALPKTTWFGFTGTPNFYSDEVHDVKTSKDISTYDIFGPRLHRYTIKDAIGDGNVLGFDVTYYETDFEHDLDSGLTEKELEKEVYASLPFRQAVVADIQRNWATNASGPINMGVREPNQFQGMLAVSGKQAVASYYSLFKQLAPELRVAMTYSRDEANGTGASDLQAALKQAMQDYMTFYGTRNFLEDKDPQRAYLNDMTKRIARKKPYNKGNDTDRLDLIIVSDQLLTGFDSKFVNIIYMDKILGEGPLIQAMSRTNRTIDKTAKPHGKVRFYRQGAVMEEKVKDALVIYTKGGNDTLADAGNTPDDQEQKELFDEGILAPKAADKIIDLNPQIKRLQQLAGDNFSQMPRSEKEQVEFAVTAAQVNSQVQQLVQQGYVLGNSVEGPEGPITLGIESATQLSSLQARMNDVNEVLPADKQVDLTNIKLVLQSFANEIIDYDKLVDLLNAYMDEVSVANRAAVEEHVQPLDQDNREEIGQVLDGIEQGEYTEPFTTETLKSVRKAIRTAQQDLKIYKWAADHDYNGNDILAAYELYRPGIALVDNTALNQYLQDLESRLDIGFFELADFEESLLNYFAKITKK
SIO_010081: GJ664_RS10015
subclass of: SO_0000673
so part of: GJ664_RS10015
location: 7808..10780
location: region:7808-10780:1
so has part: feature:7808-10780:1:exon

WP_154255317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7808-10780:1:exon

GJ664_RS10020
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10020
old locus tag: GJ664_10020
so part of: sequence
location: 10808..12400
location: region:10808-12400:1
so has part: feature:10808-12400:1:exon
subclass of: SO_0000010

57134067
type: Gene
SIO_000068: ncbigene

position:10808:1
position: 10808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12400:1
position: 12400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10808-12400:1:exon

GJ664_RS10020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10020
old locus tag: GJ664_10020
EC number: 2.1.1.72
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102129.1
GO function: GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction-modification system subunit M
translation: MALTADKQALIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQTWLDSQLRGETWASVWEQNPEKAAAFMQTKLGYVIQPGELFSDWQAAINVDQFNITNVADALVHFNQGIQPGAKATFEGIFDDMDLASSRLGSNTQTRTKTLMDWISLIDQIELDEDADVLGDLYEYLIGMFAANSGAKAGEFYTPHQVSDIMARILTAGREEIPTYSLYDPAMGSGSLLLTTASYMRNDGVRGAIKYYGQEVITTTYNLGRINLMMHGVEYNDIHIHNADTLSSDWPDGVQSGVDSPRMFDAVMANPPYSLKWDNTNREDDPRFKAGIAPKSKADFAFLQHGLYHLKQDGRMAIVLPHGVLFRGAAEGRIRQALLENRNISAVIGLPEKIFTNTGIPTIIMILEKNRTTDDVLFIDASKGFEKQKNNNKLRQEDVDLIVETFLKREDVEKYAHVASFEEIKENDFNLNIPRYVDTFEEEDPVDLVAVSQEIGDINRDIAQSESDLLAMISDLAVTEDSQAIIASAKQLLGGNHE
SIO_010081: GJ664_RS10020
subclass of: SO_0000673
so part of: GJ664_RS10020
location: 10808..12400
location: region:10808-12400:1
so has part: feature:10808-12400:1:exon

WP_154255318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10808-12400:1:exon

GJ664_RS10025
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10025
old locus tag: GJ664_10025
so part of: sequence
location: 12393..13595
location: region:12393-13595:1
so has part: feature:12393-13595:1:exon
subclass of: SO_0000010

57134068
type: Gene
SIO_000068: ncbigene

position:12393:1
position: 12393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13595:1
position: 13595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12393-13595:1:exon

GJ664_RS10025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10025
old locus tag: GJ664_10025
inference: COORDINATES: protein motif:HMM:NF013579.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MSNKVPQIRFNGYSDDWEERKLGDVVGEIQSGNRLPKDSLTNGDVPYVVAQTKNDGVFTKIARGTLDYNGKPMKLFPGNSISFSIDNPEAMFYRNAEFYTSNIMRVIHEDHLTHEQYVFILENMKRFIRGYDWSRKFSGPVVSNLEYLQPSEEEQQKIGSFFKQLDDTITLHQRKLDLLKEQKKGYLQKMFPKNGAKVPELRFAGFADDWEERKLSDLTESHNSGVYIPKDQYGEGTNIIGVGDIYDSDVVDGQRYRLAPVKDKRFILHTNDLLYGESSLVPEGIARVVSVSEAGAGTAFAWHTRRFKVNQVTLNSRFLGLELDYWLPARSHLMRSSTKTALTGITTQDFFNTQIVFPSKPEQEKIATLINSLDTAIALHQRKLDLLKEQKKGFLQKMFV
SIO_010081: GJ664_RS10025
subclass of: SO_0000673
so part of: GJ664_RS10025
location: 12393..13595
location: region:12393-13595:1
so has part: feature:12393-13595:1:exon

WP_154255319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12393-13595:1:exon

GJ664_RS10030
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10030
old locus tag: GJ664_10030
so part of: sequence
location: 13609..14454
location: region:13609-14454:1
so has part: feature:13609-14454:1:exon
subclass of: SO_0000010

57134069
type: Gene
SIO_000068: ncbigene

position:13609:1
position: 13609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14454:1
position: 14454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13609-14454:1:exon

GJ664_RS10030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10030
old locus tag: GJ664_10030
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: GIY-YIG nuclease family protein
translation: MIKLNDILTIDDFSDFRIRFVLSWGNETEQNPLERYRNDPDDPMRHYLWKGNKATGFKVGTKVIGLIRLAGDNWLLTHVLQITAVNDVPIAAALPTIDEQLNYWYNAEPMEKFTKFFGRVIVNFHNTSQNLIRRPETVIDAMEVVEILSNNFSDRDFPGYANVTITWSQLHQIISRNNREWRTALQNQKGIYLITDTHSGQQYVGSAYGEEMIWGRWQAYVLTGHGGNEALKKLPFEYIKQHFQYSILEIADGKSSDKYIFERENWWKQALLTRTFGYNMN
SIO_010081: GJ664_RS10030
subclass of: SO_0000673
so part of: GJ664_RS10030
location: 13609..14454
location: region:13609-14454:1
so has part: feature:13609-14454:1:exon

WP_099947562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13609-14454:1:exon

GJ664_RS10035
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10035
old locus tag: GJ664_10035
so part of: sequence
location: complement(14582..14938)
location: region:14582-14938:-1
so has part: feature:14582-14938:-1:exon
subclass of: SO_0000010

57134070
type: Gene
SIO_000068: ncbigene

position:14582:-1
position: 14582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14938:-1
position: 14938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14582-14938:-1:exon

GJ664_RS10035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10035
old locus tag: GJ664_10035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MKKLRFKPRATFNADLKRLASLDKSIIDEVRAAIDLLLEQQQLPPEFEDHELNRRMSGYNEFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLFPGQNRSKRYRKNDE
SIO_010081: GJ664_RS10035
subclass of: SO_0000673
so part of: GJ664_RS10035
location: complement(14582..14938)
location: region:14582-14938:-1
so has part: feature:14582-14938:-1:exon

WP_002834562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14582-14938:-1:exon

GJ664_RS10040
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10040
old locus tag: GJ664_10040
so part of: sequence
location: complement(14938..15216)
location: region:14938-15216:-1
so has part: feature:14938-15216:-1:exon
subclass of: SO_0000010

57134071
type: Gene
SIO_000068: ncbigene

position:15216:-1
position: 15216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14938-15216:-1:exon

GJ664_RS10040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10040
old locus tag: GJ664_10040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MTLALTQSDFRANLKKYLDQVNDEDETVYIARSNSRAVAIVSQEKMDWLERALKAKEGSLEYAIARDQLIKRHVLPDDEIVESDDDYWGQFK
SIO_010081: GJ664_RS10040
subclass of: SO_0000673
so part of: GJ664_RS10040
location: complement(14938..15216)
location: region:14938-15216:-1
so has part: feature:14938-15216:-1:exon

WP_003586674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14938-15216:-1:exon

GJ664_RS10045
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10045
old locus tag: GJ664_10045
so part of: sequence
location: 15293..15880
location: region:15293-15880:1
so has part: feature:15293-15880:1:exon
subclass of: SO_0000010

57134072
type: Gene
SIO_000068: ncbigene

position:15293:1
position: 15293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15880:1
position: 15880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15293-15880:1:exon

GJ664_RS10045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10045
old locus tag: GJ664_10045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTVFQVGKATLLRVSDVMRLKQADIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHRLASEWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTESMLDQIDFG
SIO_010081: GJ664_RS10045
subclass of: SO_0000673
so part of: GJ664_RS10045
location: 15293..15880
location: region:15293-15880:1
so has part: feature:15293-15880:1:exon

WP_154255320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15293-15880:1:exon

GJ664_RS10050
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10050
old locus tag: GJ664_10050
pseudo: true
so part of: sequence
location: 16241..>16450
location: region:16241-16450:1
so has part: feature:16241-16450:1:exon
subclass of: SO_0000010

57134073
type: Gene
SIO_000068: ncbigene

position:16241:1
position: 16241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16450:1
position: 16450
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16241-16450:1:exon

GJ664_RS10050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10050
old locus tag: GJ664_10050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: GJ664_RS10050
subclass of: SO_0000673
so part of: GJ664_RS10050
location: 16241..>16450
location: region:16241-16450:1
so has part: feature:16241-16450:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16241-16450:1:exon

GJ664_RS10055
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10055
old locus tag: GJ664_10055
so part of: sequence
location: 17175..18110
location: region:17175-18110:1
so has part: feature:17175-18110:1:exon
subclass of: SO_0000010

57134074
type: Gene
SIO_000068: ncbigene

position:17175:1
position: 17175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18110:1
position: 18110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17175-18110:1:exon

GJ664_RS10055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10055
old locus tag: GJ664_10055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MGNEIIKYDPELNTIPLRKFTPVEMNLFFSIISRMRDKSDQTIRFTFDQLKELSAYKPTANNRFEDDIQRTYEKMMGLHFGRRSKSGLTREFFVLFTEFKIDGDAEEPYVDVKVYERALPLLNKLESWVRYALAEFRDLKSSYAKTMFRLLKQFRTTGYAYFSKEDFFELLDMPKSYWNSPSNVDKFVIKPIKEELTPLFRGLTVRKKYGKGRGKPVIGYSFTWKPEKKDANDFSQGQLQDERQKLFNIQHNGELTEQEKWRAIDKVKGLTLGSTEKQALADKQAEHDKKIRDQARQEALAELRKGFGKHA
SIO_010081: GJ664_RS10055
subclass of: SO_0000673
so part of: GJ664_RS10055
location: 17175..18110
location: region:17175-18110:1
so has part: feature:17175-18110:1:exon

WP_087609721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17175-18110:1:exon

GJ664_RS10060
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10060
old locus tag: GJ664_10060
so part of: sequence
location: 18103..18621
location: region:18103-18621:1
so has part: feature:18103-18621:1:exon
subclass of: SO_0000010

57134075
type: Gene
SIO_000068: ncbigene

position:18103:1
position: 18103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18621:1
position: 18621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18103-18621:1:exon

GJ664_RS10060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10060
old locus tag: GJ664_10060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007745771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HTH domain-containing protein
translation: MPKTIRELADELGVSKQAIWQKIKRDASIDLRQFTSTKGNTVYVDVDGQKAIKAMFSNDSSTRYRQQKDDVDDNKKDAVDGQDEVKFLRNLVSEFQSEKKELHKLLDQQQRLALQDKQLLEEYKAEIKDLKALTMAPHDNSEKEVTSDKQPEPENSTPESQPKPKKWWRFGK
SIO_010081: GJ664_RS10060
subclass of: SO_0000673
so part of: GJ664_RS10060
location: 18103..18621
location: region:18103-18621:1
so has part: feature:18103-18621:1:exon

WP_001748066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18103-18621:1:exon

GJ664_RS10065
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10065
old locus tag: GJ664_10065
pseudo: true
so part of: sequence
location: 18835..>18924
location: region:18835-18924:1
so has part: feature:18835-18924:1:exon
subclass of: SO_0000010

57134076
type: Gene
SIO_000068: ncbigene

position:18835:1
position: 18835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18924:1
position: 18924
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18835-18924:1:exon

GJ664_RS10065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10065
old locus tag: GJ664_10065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526617.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: GJ664_RS10065
subclass of: SO_0000673
so part of: GJ664_RS10065
location: 18835..>18924
location: region:18835-18924:1
so has part: feature:18835-18924:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18835-18924:1:exon

GJ664_RS10070
type: Gene
subclass of: SO_0000704
RO_0002162: 1599
locus tag: GJ664_RS10070
old locus tag: GJ664_10070
so part of: sequence
location: complement(18954..19403)
location: region:18954-19403:-1
so has part: feature:18954-19403:-1:exon
subclass of: SO_0000010

57134077
type: Gene
SIO_000068: ncbigene

position:18954:-1
position: 18954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19403:-1
position: 19403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18954-19403:-1:exon

GJ664_RS10070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1599
locus tag: GJ664_RS10070
old locus tag: GJ664_10070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLLKRICSDYLHGLVFFIIVFYFMTANPDGSMPLKWSIVNVYWTISFLIAYPLLLETVPSIKKINFHMKSLQSRSIHMEDKATKKLSDLYHDSTNPVSNRIDLQARSDYQNDWLNLIISFFVSGLLIAISIPSLFFIAFKNLLGRRML
SIO_010081: GJ664_RS10070
subclass of: SO_0000673
so part of: GJ664_RS10070
location: complement(18954..19403)
location: region:18954-19403:-1
so has part: feature:18954-19403:-1:exon

WP_045353708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18954-19403:-1:exon