Brachyspira hyodysenteriae strain Bh743-7 plasmid pBh743-7x, complete sequence.
type: Entry
definition: Brachyspira hyodysenteriae strain Bh743-7 plasmid pBh743-7x, complete sequence.
sequence version: NZ_CP046933.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP046933.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13511716
keyword: RefSeq
source: Brachyspira hyodysenteriae
organism: Brachyspira hyodysenteriae
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Brachyspirales; Brachyspiraceae; Brachyspira.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP046933.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: OCT-2019\nAssembly Method :: Unicycler v. v0.4.4\nAssembly Name :: Bh743-7_ONT_Ill_HyB_UC\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: Oxford Nanopore MinION + Illumina NovaSeq\n 6000 S2 PE150 XP\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 03:54:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,706\nCDSs (total) :: 2,666\nGenes (coding) :: 2,652\nCDSs (with protein) :: 2,652\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 34\nncRNAs :: 3\nPseudo Genes (total) :: 14\nCDSs (without protein) :: 14\nPseudo Genes (ambiguous residues) :: 0 of 14\nPseudo Genes (frameshifted) :: 3 of 14\nPseudo Genes (incomplete) :: 8 of 14\nPseudo Genes (internal stop) :: 4 of 14\nPseudo Genes (multiple problems) :: 1 of 14\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 32528
topology: circular
so has quality: SO_0000988
location: 1..32528
location: region:1-32528:1
RO_0002162: 159

NZ_CP046933
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13511716
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequences Brachyspira hyodysenteriae causing swine dysentery in Switzerland
author: Garcia-Martin, A.B.
author: Schmitt, S.
author: Zeeh, F.
author: Perreten, V.
journal: Unpublished

2
title: Direct Submission
author: Garcia-Martin, A.B.
author: Collaud, A.
author: Perreten, V.
journal: Submitted (11-DEC-2019) Institute of Veterinary Bacteriology, University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32528:1
position: 32528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32528:1:source
so part of: sequence
organism: Brachyspira hyodysenteriae
mol type: genomic DNA
strain: Bh743-7
isolation source: feces
host: Sus scrofa domesticus
plasmid: pBh743-7x
country: Switzerland: Bern
collection date: 2017

159
type: Taxonomy
SIO_000068: taxonomy

GQX59_RS13340
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13340
old locus tag: GQX59_13315
so part of: sequence
location: complement(join(32276..32528,1..851))
location: region:1-32528:-1
so has part: feature:1-851:-1:exon
so has part: feature:32276-32528:-1:exon
subclass of: SO_0000010

63964009
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32528:-1
position: 32528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-851:-1:exon

position:851:-1
position: 851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32276-32528:-1:exon

position:32276:-1
position: 32276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GQX59_RS13340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13340
old locus tag: GQX59_13315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011987008.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MILRSKTKELLQTRTLTEKQINNTKLNKEEMDKKAIILKSYPQRLVLELTNACNLRCIMCGRDEAEFAPTVFKLDYLKKMEKLLDTIEEVTLFGWGEPTMHPNFIEILEYLNNFPVRKYFVTNGMRLDKIKNALFDYQVDIMAISLDGAKAETNDRIRFGGNFNLIVKNIRDIVKERKNRGVNYPYMNFVMALMDSNIEELPQLIELASDIGLEEVKGVYLTVFTNNLLNETLYNKQDKVIKIFNESEELAKKLNIKLKLPYIQGEDIAENKYHKDCFVAWRDFFLASDGWVRPCQSTAVKFLNFENYDNFDDMWNGKEFQEFRKNVNDQDNMCDECKRCFQSSHANWNNELSFIQINQQFAPEWEK
SIO_010081: GQX59_RS13340
subclass of: SO_0000673
so part of: GQX59_RS13340
location: complement(join(32276..32528,1..851))
location: region:1-32528:-1
so has part: feature:1-851:-1:exon
so has part: feature:32276-32528:-1:exon

WP_012672159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-851:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:32276-32528:-1:exon

GQX59_RS13345
type: Gene
subclass of: SO_0000704
RO_0002162: 159
gene: rfbF
locus tag: GQX59_RS13345
old locus tag: GQX59_13320
so part of: sequence
location: complement(870..1655)
location: region:870-1655:-1
so has part: feature:870-1655:-1:exon
subclass of: SO_0000010

63964010
type: Gene
SIO_000068: ncbigene

position:870:-1
position: 870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1655:-1
position: 1655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:870-1655:-1:exon

GQX59_RS13345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
gene: rfbF
locus tag: GQX59_RS13345
old locus tag: GQX59_13320
EC number: 2.7.7.33
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020064990.1
GO function: GO:0047343 - glucose-1-phosphate cytidylyltransferase activity [Evidence IEA]
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-1-phosphate cytidylyltransferase
translation: MKLVILAGGLGTRLGEETIVRPKPLVEIGGRPIIWHIMKYYSHFGINDFVVLLGYKGYMIKEFFNNYRMHLYDMKIDFSKNTSSFLEKKNHADMENWSIDLIDTGENSMTGGRIKRAEHLLKDEESFFLTYGDGVSNIDILKELEFHKKHGKIATMGAVFPPARWGAISINKDDMITNFIEKPRGDNAYINGGFFILNKKIFNYLNDDSTIFEKEPLRNLAKDKELMAFKHDGFWQCMDTQRDKYLLEEIWSKGNAPWKVW
SIO_010081: GQX59_RS13345
subclass of: SO_0000673
so part of: GQX59_RS13345
location: complement(870..1655)
location: region:870-1655:-1
so has part: feature:870-1655:-1:exon

WP_020064990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:870-1655:-1:exon

GQX59_RS13350
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13350
old locus tag: GQX59_13325
so part of: sequence
location: complement(1665..1901)
location: region:1665-1901:-1
so has part: feature:1665-1901:-1:exon
subclass of: SO_0000010

63964011
type: Gene
SIO_000068: ncbigene

position:1665:-1
position: 1665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1901:-1
position: 1901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1665-1901:-1:exon

GQX59_RS13350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13350
old locus tag: GQX59_13325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPINKSNNTLLEQVQNSNLFKDSDKISNNKKLESTIVIKINEDHKKILENHFKNEKGLALSSGIRQIIFEYMKENNLI
SIO_010081: GQX59_RS13350
subclass of: SO_0000673
so part of: GQX59_RS13350
location: complement(1665..1901)
location: region:1665-1901:-1
so has part: feature:1665-1901:-1:exon

WP_020064989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1665-1901:-1:exon

GQX59_RS13355
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13355
old locus tag: GQX59_13330
so part of: sequence
location: complement(1903..2646)
location: region:1903-2646:-1
so has part: feature:1903-2646:-1:exon
subclass of: SO_0000010

63964012
type: Gene
SIO_000068: ncbigene

position:1903:-1
position: 1903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2646:-1
position: 2646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1903-2646:-1:exon

GQX59_RS13355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13355
old locus tag: GQX59_13330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672161.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MLKSIAFHILKGGVGKTTLSGNIAYKISQTAKTIIIDCDIQANTSNWFLKEKADYELADCLQGIPLGNAIKKIKDNLYIIPTKSKDSLLKNYAETKLFQEPFIFEDLNTELQKLGFEYAIYDLSPSISQLERCILLAINEVITPITPEYFSFDGIELFYNELQKINKSYRKNTKYNKIIINLINKSFETHKQYLNILQDLKKYNIYKVGQDRKIADSQKYNQTIYEYYPKSTTIEELNKIANDIIGA
SIO_010081: GQX59_RS13355
subclass of: SO_0000673
so part of: GQX59_RS13355
location: complement(1903..2646)
location: region:1903-2646:-1
so has part: feature:1903-2646:-1:exon

WP_047100900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1903-2646:-1:exon

GQX59_RS13360
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13360
old locus tag: GQX59_13335
so part of: sequence
location: complement(3115..4125)
location: region:3115-4125:-1
so has part: feature:3115-4125:-1:exon
subclass of: SO_0000010

63964013
type: Gene
SIO_000068: ncbigene

position:3115:-1
position: 3115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4125:-1
position: 4125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3115-4125:-1:exon

GQX59_RS13360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13360
old locus tag: GQX59_13335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672162.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKNISKKKFINSPINAPRLIAKAETFTKYDLSEMQRLEIEKKLGILKDEYFNLNGAYPYVIDFINYMCTFYKNDKYIHRANNNLETHYLIYTSKESFFNATLGEFQEQRKILEVDVYRTLNKIDKDGMPVKPKIYPLDAKHSIHTDAIRFSIINKDMNSQIQNLKNINGEVYYYAIEFLKPIWNCLFGSKGTEGYIRIPSQLQAKIVHSINRYKDNPKFTKYGNFGKSINYRQLFLYLCLHDNGRSYEIEYDFKDIIKKCFRQNTQLKGDSIFLKDKSKAYNFIKKGLELFNQMAKDGLIDKINVLPYALKIKSDSIIVSLHREKTNIPNFELIN
SIO_010081: GQX59_RS13360
subclass of: SO_0000673
so part of: GQX59_RS13360
location: complement(3115..4125)
location: region:3115-4125:-1
so has part: feature:3115-4125:-1:exon

WP_047100899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3115-4125:-1:exon

GQX59_RS13365
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13365
old locus tag: GQX59_13340
so part of: sequence
location: complement(4286..5380)
location: region:4286-5380:-1
so has part: feature:4286-5380:-1:exon
subclass of: SO_0000010

63964014
type: Gene
SIO_000068: ncbigene

position:4286:-1
position: 4286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5380:-1
position: 5380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4286-5380:-1:exon

GQX59_RS13365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13365
old locus tag: GQX59_13340
inference: COORDINATES: protein motif:HMM:NF015736.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaB-like helicase C-terminal domain-containing protein
translation: MIDKDLIVDKEDYLKNELINSLREKLNEINKSNIDNSILEIKNILKEFSILNEDNLNIEENILNDNTIEYLINTIVNTKPYNLEDTSFEVLKDFLKDYLITIGAESSVGKTSFVSQLALEILQKNDNTILAFYSLDDSKAFLTKKMILQLISNNKKKNNTDFIKLINKHKNDLLSILFSSRIAIFEKLNIYNLHNQLLKLKQNASSKLNIKEPRIIVVIDYLQIIDHDSSNLREGLNKVCSYLKDIQKKLNCMMILLSQFNRSKETNINTLIRYRETSEIENISDLCINLESINNQESYNTKLYIVKNKDGEKNKIFTSLRNEYRFSKFNIYHASSFIQNKEENIDNNYIEESYSEESIDNFIF
SIO_010081: GQX59_RS13365
subclass of: SO_0000673
so part of: GQX59_RS13365
location: complement(4286..5380)
location: region:4286-5380:-1
so has part: feature:4286-5380:-1:exon

WP_020064988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4286-5380:-1:exon

GQX59_RS13370
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13370
old locus tag: GQX59_13345
so part of: sequence
location: complement(5377..6588)
location: region:5377-6588:-1
so has part: feature:5377-6588:-1:exon
subclass of: SO_0000010

63964015
type: Gene
SIO_000068: ncbigene

position:5377:-1
position: 5377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6588:-1
position: 6588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5377-6588:-1:exon

GQX59_RS13370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13370
old locus tag: GQX59_13345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672164.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CHC2 zinc finger domain-containing protein
translation: MNKIDDIKRYYSIIDIAKRLGFEIDRNNKAICPFHNDTNPSLSFNIKDNYYHCFSCGASGDNIKLVQEVLHCSFNEAINFITGNNYQYINKSNIKKEITNDKFKIDYSNIYKTFVDLLNNEEAFQYLEKRCITKNQVIEHKIKNIPKDKKEQFLIIKKLLEVYNEKDLINSGIISKSKEYNNLYLFHYKHRLIIPYFNIDGETINSIQGRTIDEDIKPKYLFNKNANDSIYNIDKIGDIKDIIICEGVIDCLSLERLGYNAIALSGATKINILRDYPILEKYNIYSFSDNDKAGKKLIKDIYNFNNYKGTFLISNFSDDKEVKDINELLIKSQVKKFNINNIEYKYLELKNDKICILDYYIFTKNELKYIKKSNDFERTLYLLTEDKKKLTEEEYIKKYGELI
SIO_010081: GQX59_RS13370
subclass of: SO_0000673
so part of: GQX59_RS13370
location: complement(5377..6588)
location: region:5377-6588:-1
so has part: feature:5377-6588:-1:exon

WP_012672164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5377-6588:-1:exon

GQX59_RS13375
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13375
old locus tag: GQX59_13350
so part of: sequence
location: complement(6641..7465)
location: region:6641-7465:-1
so has part: feature:6641-7465:-1:exon
subclass of: SO_0000010

63964016
type: Gene
SIO_000068: ncbigene

position:6641:-1
position: 6641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7465:-1
position: 7465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6641-7465:-1:exon

GQX59_RS13375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13375
old locus tag: GQX59_13350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672165.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MNNKLMLTRRQILDLETVFGQAYTNVIRQYYKSNDSLTYENIIKFLKENKKTKSNSTIAIYKAALKKLIKHKIKDLNKKAIIDTAFSEIKVTKPDKTITKEKIVSKDTINQMMKLSNEKNKLIIQTLYATGLRVSELINIKKKDCKKTIEDNITYMSVSVIGKGNKERKIKLKIELYYKIINTFNSKIYLFETKNKRAFTRQYIYKIVNTAGLKALGTRQVHPHTLRHSFATELLIKDNKSLKAVSKYLGHSSTAITSDFYIHDELSIKDLIKF
SIO_010081: GQX59_RS13375
subclass of: SO_0000673
so part of: GQX59_RS13375
location: complement(6641..7465)
location: region:6641-7465:-1
so has part: feature:6641-7465:-1:exon

WP_047100895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6641-7465:-1:exon

GQX59_RS13380
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13380
old locus tag: GQX59_13355
so part of: sequence
location: complement(7695..9566)
location: region:7695-9566:-1
so has part: feature:7695-9566:-1:exon
subclass of: SO_0000010

63964017
type: Gene
SIO_000068: ncbigene

position:7695:-1
position: 7695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9566:-1
position: 9566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7695-9566:-1:exon

GQX59_RS13380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13380
old locus tag: GQX59_13355
inference: COORDINATES: protein motif:HMM:NF013681.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha-1,2-fucosyltransferase
translation: MNDKYVICSITTGFTDQLINFATAIYIREKYKKNVKLDISWFSVYENTDYLGIEKRNLEVLNIFNDFNFEIATKKEIDIALKSIFIDGRYENIDKILKSNKHIYVGPYVGHTLFYYGHINISSFFNLDKYFINLLNEKHKNILNDMSSFESVTIHIRRGDYMYALKIDGRKNNASLDYIYTSIKYLNNTLENKNIKFYIFSNNKKYIKNNLIPIFQNNNINFEIIEDNPEYIDFYLMTKCKHIISSLGKFAKVAFKFIKNENKIFIDTDNIYNLKKEYFYKNICEKYCNIIYEEYNNIKTYISKNNMIYILDLIEKNNIKNICQIGLLDGLETHTLLKYSADNNNCFNLLCFENNERDIVGIELKNLTENEKKLFTLYIEQSPLDIDNSFNIKNIDFIFFTKENSNPLVFIYLIYLFPFMKEEIIIVFNDIISGKYYSGSYCIFNMFNGEKNQFYNFNTNKYDNIGYIKIKKQELLNIIKKISVIEYDGYINKFFMNKLIDNRNDYYNYFDLDMSYIRLNNLKQYMKDKFDIEYSNYIISNIENNIINYEKQYYKNQKNNFYSQNQIHISKIENIIDKHNKLINSISWWIPIKKLRENFKNKFIRPDQTRPDQTRPDQTRPNM
SIO_010081: GQX59_RS13380
subclass of: SO_0000673
so part of: GQX59_RS13380
location: complement(7695..9566)
location: region:7695-9566:-1
so has part: feature:7695-9566:-1:exon

WP_012672166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7695-9566:-1:exon

GQX59_RS13385
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13385
old locus tag: GQX59_13360
so part of: sequence
location: complement(9650..10630)
location: region:9650-10630:-1
so has part: feature:9650-10630:-1:exon
subclass of: SO_0000010

63964018
type: Gene
SIO_000068: ncbigene

position:9650:-1
position: 9650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10630:-1
position: 10630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9650-10630:-1:exon

GQX59_RS13385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13385
old locus tag: GQX59_13360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020065006.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rhamnan synthesis F family protein
translation: MKRLAVFAGYDKDNIIDDYVVYYIKELKKISDIIYVSDCNMSDNELKKINDYCIHIINGRHEEYDFGSYKRGYLYAKENNMLQNYDYLILCNDSCYGPLFDLENIINKMNDYNFGGISISKDLKIANHNYITSFFIYINKNIFNKDFFNNFIYDIKKEEDKMDIIKKYEFGLSKLMLDNNIELKGLFNDNGEFNRPYFNPLALIEEGYPFLKKHVLEKKVTVPLNIDELTNIIKIIKNNYDIKLIVNHLNRVADKEQIKYLFQKYKPYKKTFIHEKIFSLFTRYSPSGKYQTVYNFFNFLTISIDKPIKDSYIETDYKDFNFLLEI
SIO_010081: GQX59_RS13385
subclass of: SO_0000673
so part of: GQX59_RS13385
location: complement(9650..10630)
location: region:9650-10630:-1
so has part: feature:9650-10630:-1:exon

WP_012672167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9650-10630:-1:exon

GQX59_RS13390
type: Gene
subclass of: SO_0000704
RO_0002162: 159
gene: rfbB
locus tag: GQX59_RS13390
old locus tag: GQX59_13365
so part of: sequence
location: complement(10639..11709)
location: region:10639-11709:-1
so has part: feature:10639-11709:-1:exon
subclass of: SO_0000010

63964019
type: Gene
SIO_000068: ncbigene

position:10639:-1
position: 10639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11709:-1
position: 11709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10639-11709:-1:exon

GQX59_RS13390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
gene: rfbB
locus tag: GQX59_RS13390
old locus tag: GQX59_13365
EC number: 4.2.1.46
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002668885.1
GO function: GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-glucose 4,6-dehydratase
translation: MRNFNNILVTGGCGFIGSNFIRYILEKSDYKGNIINIDALTYAGNRENLIDIEKKYKDRYFFEKVNICDDKKINEIFSKYNPDCIVHFAAESHVDRSIYGPKDFLETNIMGTFILLEAARKLWENNKENKLFHHISTDEVYGSLGETGYFYETTPYDPRSPYSSSKASSDHIVKAYYHTYNLPVTISNCSNNYGPYQFPEKLIPLMISNIVEEKDLPVYGDGKNIRDWIFVEDHNNAVIDIIHKGRVGETYNIGGENEITNIDMVNILCEKLSAKMNKEKDYYKKLIKFVKDRAGHDRRYAINCDKIKKELGWERKYDFNTAIDITIDWYLNNKQWIDNIKSGEYKKWIELNYSSK
SIO_010081: GQX59_RS13390
subclass of: SO_0000673
so part of: GQX59_RS13390
location: complement(10639..11709)
location: region:10639-11709:-1
so has part: feature:10639-11709:-1:exon

WP_012672168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10639-11709:-1:exon

GQX59_RS13395
type: Gene
subclass of: SO_0000704
RO_0002162: 159
gene: rfbA
locus tag: GQX59_RS13395
old locus tag: GQX59_13370
so part of: sequence
location: complement(11723..12586)
location: region:11723-12586:-1
so has part: feature:11723-12586:-1:exon
subclass of: SO_0000010

63964020
type: Gene
SIO_000068: ncbigene

position:11723:-1
position: 11723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12586:-1
position: 12586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11723-12586:-1:exon

GQX59_RS13395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
gene: rfbA
locus tag: GQX59_RS13395
old locus tag: GQX59_13370
EC number: 2.7.7.24
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020065008.1
GO function: GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose-1-phosphate thymidylyltransferase RfbA
translation: MKGIVLAGGSGTRLYPMTNVISKQLLPIYDKPMVYYPLSVLMLSKIKDILVISTENDTPLFKKLLKDGSQWGCNIEYAVQKAPNGLAEAFIIGESFIGKDNVSMILGDNIFFGQSFSSVLEKSAKIDNGAVIFAYQVKDPERFGIVEIDKDYNALSIEEKPKNPKSNYAVTGLYFYDNDVVNISKNIKPSARGELEITDVNKVYLENKKLKVEVLGRGFAWLDTGTRDSLIQASQFVSAVENIEGMQIACLEEIAYNNKWIDASKIEETASKLKNSEYGKYLINLIK
SIO_010081: GQX59_RS13395
subclass of: SO_0000673
so part of: GQX59_RS13395
location: complement(11723..12586)
location: region:11723-12586:-1
so has part: feature:11723-12586:-1:exon

WP_012672169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11723-12586:-1:exon

GQX59_RS13400
type: Gene
subclass of: SO_0000704
RO_0002162: 159
gene: rfbD
locus tag: GQX59_RS13400
old locus tag: GQX59_13375
so part of: sequence
location: complement(12605..13465)
location: region:12605-13465:-1
so has part: feature:12605-13465:-1:exon
subclass of: SO_0000010

63964021
type: Gene
SIO_000068: ncbigene

position:12605:-1
position: 12605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13465:-1
position: 13465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12605-13465:-1:exon

GQX59_RS13400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
gene: rfbD
locus tag: GQX59_RS13400
old locus tag: GQX59_13375
EC number: 1.1.1.133
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672170.1
GO function: GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose reductase
translation: MIWVIGKNGMLAQDILKAFNKNNIEYTSTASNIDITNIDILNNFIKDKNIKTIINCSAYTKVDLAEDEKDICYKVNGEGVKNITEIASNINADLIHFSTDYVFDGENNKPYNEEDKTNPINIYGKSKLEGEKYALFYNKAIVIRVSWLYGIYGKNFVYTMINLMNSKESIKVVNDQFGSPTYTEDVAMVIYDIIKNNNFDYGLYHYTNEGNISWYDFAKTIYNKGKEYNIINNDCKVNPCTTEEYPTKAKRPKYSVLSVEKIKRYVKIYNYEDSLNSFFNIYQKNK
SIO_010081: GQX59_RS13400
subclass of: SO_0000673
so part of: GQX59_RS13400
location: complement(12605..13465)
location: region:12605-13465:-1
so has part: feature:12605-13465:-1:exon

WP_012672170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12605-13465:-1:exon

GQX59_RS13405
type: Gene
subclass of: SO_0000704
RO_0002162: 159
gene: rfbC
locus tag: GQX59_RS13405
old locus tag: GQX59_13380
so part of: sequence
location: complement(13471..14049)
location: region:13471-14049:-1
so has part: feature:13471-14049:-1:exon
subclass of: SO_0000010

63964022
type: Gene
SIO_000068: ncbigene

position:13471:-1
position: 13471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14049:-1
position: 14049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13471-14049:-1:exon

GQX59_RS13405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
gene: rfbC
locus tag: GQX59_RS13405
old locus tag: GQX59_13380
EC number: 5.1.3.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020005707.1
GO function: GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase
translation: MPFTFKKLDINGLFIAEPRIFGDSRGYFLETYSEKDFFEAGIKEKFVQDNQSKSTKNVLRGLHYQKKYCQAKLVRVLEGEVFDVAVDLRNDSPTFGKYYGVLLTEENKKQFFIPKGFAHGFIVLSESAVFAYKCSDFYHPEEEGGIIYNDKNINIDWTCDTKDVLVSDKDLKLPEFDKNKKYFSLDGNWIGE
SIO_010081: GQX59_RS13405
subclass of: SO_0000673
so part of: GQX59_RS13405
location: complement(13471..14049)
location: region:13471-14049:-1
so has part: feature:13471-14049:-1:exon

WP_012672171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13471-14049:-1:exon

GQX59_RS13410
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13410
old locus tag: GQX59_13385
so part of: sequence
location: complement(14057..15244)
location: region:14057-15244:-1
so has part: feature:14057-15244:-1:exon
subclass of: SO_0000010

63964023
type: Gene
SIO_000068: ncbigene

position:14057:-1
position: 14057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15244:-1
position: 15244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14057-15244:-1:exon

GQX59_RS13410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13410
old locus tag: GQX59_13385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020065010.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MNKCECSQCKNREYDISEYLVLEDDLKILDNERPLGISGHLRVKDEAMSLAECIDSCIDFLDELIITYNTSSDNTEEILKNYEKKYPEKIKLFHYKPNIIRYNKDEYNTKYSQIHYLDNYYNYGLIKIKYKYYVKIDADQIYFTDKLLKLRELLILDINQIKLSNNINKLLLINKIAWCIPIKKLRNKFRTYCIRKYFNKDKNYIYNGDENILSLDDFILLSRKRHSDKNISYDLAGFNLILHNNKLYLDTYWPMNGGRFDHVLYQASYSNKYFMNEIFEVNQTPHNRIILGMFWVHFGNIKHNFQYDDSFYLLEYNDIKNSKVENFSHKMKNIDNDDKIEKYIRDNTFIKYFDEDKKYLNNVFYNKYLTKPLDYAIKNNDELVNLYGKTIITVK
SIO_010081: GQX59_RS13410
subclass of: SO_0000673
so part of: GQX59_RS13410
location: complement(14057..15244)
location: region:14057-15244:-1
so has part: feature:14057-15244:-1:exon

WP_044555473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14057-15244:-1:exon

GQX59_RS13415
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13415
old locus tag: GQX59_13390
so part of: sequence
location: complement(15392..16594)
location: region:15392-16594:-1
so has part: feature:15392-16594:-1:exon
subclass of: SO_0000010

63964024
type: Gene
SIO_000068: ncbigene

position:15392:-1
position: 15392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16594:-1
position: 16594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15392-16594:-1:exon

GQX59_RS13415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13415
old locus tag: GQX59_13390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672173.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-grasp fold amidoligase family protein
translation: MTPEENIRFKEKIIKEQFKNALGYELNLENPKTFNEKLQWLKLYYHDPLMTICADKYLVRDYVKEKICEEYLVPLIGVWDRVEDIDFDSLPNQFVLKVNWGSGQNIIVKDKSTLNIEETKNKLEYWMKPTSNHYYYYYEWCYKNIKPKITCEKYIEQIDSNLVDYRVFCFNGIANYIIVDHNAKIFGVNAKYLRSVYNRNWEKLDIQIYHPIYKPIIEKPYCIDEILYISEKISKNFIHVRVDFYIIKDKPIIGELTFYHQNGTAKFYPQEWDYKFGESLELPKEKKLEYNFIDRDTLINQAANLEPIVKQYIDIEKDYNKLKPLEEKIKLYSKKFSLFTIFNIDILSFTSNKEYFILTILGIKIVFKHKVRPDLIIICSDYNLYCNTQLQHSFFISFFK
SIO_010081: GQX59_RS13415
subclass of: SO_0000673
so part of: GQX59_RS13415
location: complement(15392..16594)
location: region:15392-16594:-1
so has part: feature:15392-16594:-1:exon

WP_209299316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15392-16594:-1:exon

GQX59_RS13420
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13420
old locus tag: GQX59_13395
so part of: sequence
location: complement(16566..17882)
location: region:16566-17882:-1
so has part: feature:16566-17882:-1:exon
subclass of: SO_0000010

63964025
type: Gene
SIO_000068: ncbigene

position:16566:-1
position: 16566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17882:-1
position: 17882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16566-17882:-1:exon

GQX59_RS13420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13420
old locus tag: GQX59_13395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013242966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-grasp fold amidoligase family protein
translation: MTPEENIKFRETITKNIFKSHVGYEPNLENPKTFNEKLQWLKLYYHDPLMTKCADKYAVREYIKETIGEEYLIPLIGVWDRVEDINFDSLPNQFVLKVNWGSGQNIIVKDKSTLNIEEIKNKLEYWMKPTSNHYYYIYEWPYKNIKPKILAEKYVMDENLNNLTVYKTFCFNSEPYLFQVIINDKTPDEKINYYDLNWNKLILKQNYQNFDYDLKKPEALNLMIDIAKKISKDFPYFIRIDFYQINEKIYFSEYTFYSDAGIAKFEPEEWDIKLGNIMTIPKNKKIEYDFIDRDILINQAANLEPIVKQYRDLEEDYNKLKPLEEKIKLYSKKFNLFTIFNIDILSFTSNKEYFIFTILGIKIVFKHKVRPDQTRPDQTRPDQTRPDLIFTYVAITYYFIIIQNIRNYNLCCNTQLQHRFFYCILRNKKYDTRRKYQI
SIO_010081: GQX59_RS13420
subclass of: SO_0000673
so part of: GQX59_RS13420
location: complement(16566..17882)
location: region:16566-17882:-1
so has part: feature:16566-17882:-1:exon

WP_209299314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16566-17882:-1:exon

GQX59_RS13425
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13425
old locus tag: GQX59_13400
so part of: sequence
location: complement(17895..18845)
location: region:17895-18845:-1
so has part: feature:17895-18845:-1:exon
subclass of: SO_0000010

63964026
type: Gene
SIO_000068: ncbigene

position:17895:-1
position: 17895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18845:-1
position: 18845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17895-18845:-1:exon

GQX59_RS13425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13425
old locus tag: GQX59_13400
EC number: 4.2.1.47
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020064996.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GDP-mannose 4,6-dehydratase
translation: MNILLTGVAGFIGSNLLDELLQNKDHTVIGIDNLNDFYDPLIKQNNIKNNINNKNFIFYNIDLLNTSELKKIFENNKIDNVIHLAGYGGVRPSIENPKLYIDNNIVATLNILECMKNHKIQKLVYASSSSVYGNSKETIFKETLNVSEPISPYAMTKKACEELCYTYNKLYNIKVIALRFFTVYGKRQRPDLAISKFTKLILENNPIPVFGDGSTMRDYTYIEDIVSGIISAIEYNKTNYEIINLGGGEPINLERMIKTIETVLGKKAIINRMEMQKGDVDKTVADITKARNLLNYNPSTSFENGIKKFVDWYIKK
SIO_010081: GQX59_RS13425
subclass of: SO_0000673
so part of: GQX59_RS13425
location: complement(17895..18845)
location: region:17895-18845:-1
so has part: feature:17895-18845:-1:exon

WP_047100890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17895-18845:-1:exon

GQX59_RS13430
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13430
old locus tag: GQX59_13405
so part of: sequence
location: complement(18842..19762)
location: region:18842-19762:-1
so has part: feature:18842-19762:-1:exon
subclass of: SO_0000010

63964027
type: Gene
SIO_000068: ncbigene

position:18842:-1
position: 18842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19762:-1
position: 19762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18842-19762:-1:exon

GQX59_RS13430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13430
old locus tag: GQX59_13405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672145.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF616 domain-containing protein
translation: MTDIQKELINKLVWFIPFRKKRDAIRNFLSHLIEEQNNIKHQLEELKYIEHSINSLKKEIIEIKENKSLNKKAIYTCITNGYDNLIIHSYINNDWDYICFTDDNILIEKKTYGNWIIKPLAFEELDNTRNNRWHKFHPHIILNNYEESIYIDSNIDIKTSYLFKCIESMQDTDISISKHFIRDCLYEESDFVSKNNIDDISIIEKQIKIFKEDNFPEHYGLSENNCIYRKHNNKEIISIMEDWWYWVKNYSKRDQLSLSYVLWKHNKELKYLTEVPIRFDTNNFKFFDHKKSDSTLIEEGKKIVGI
SIO_010081: GQX59_RS13430
subclass of: SO_0000673
so part of: GQX59_RS13430
location: complement(18842..19762)
location: region:18842-19762:-1
so has part: feature:18842-19762:-1:exon

WP_047100908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18842-19762:-1:exon

GQX59_RS13435
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13435
old locus tag: GQX59_13410
so part of: sequence
location: complement(19787..20788)
location: region:19787-20788:-1
so has part: feature:19787-20788:-1:exon
subclass of: SO_0000010

63964028
type: Gene
SIO_000068: ncbigene

position:19787:-1
position: 19787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20788:-1
position: 20788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19787-20788:-1:exon

GQX59_RS13435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13435
old locus tag: GQX59_13410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020064994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rhamnan synthesis F family protein
translation: MKILALFAGYDKDNIIDDYVVFYIEKLKKVADIIYVSDCNMNENELNKISDYCIHIINGRHEEYDFGSYKRGYIYAEQNNLLQNYDYLILCNDSVYGPLFNLNNIINKMENAQSDIWGIFKYLEDKNYKEHLQSYFISIKKEVFIQNYFKEFIFSIKKENDKKIIINKYEIGFGILLKEHNLIIKYFLDSSIKANINDDNNVAIDNPLLAISNGFPFLKIAFFKEIPLKRIYLKDLINLVYFIKDKYNVKMIINHLNRTMSDNKSLTLRRFKIFNYNIINKKLFNVSSMYSLYQKYQLILIFFNKIKITINVPEFISFTSYKNFNFLLKYIEK
SIO_010081: GQX59_RS13435
subclass of: SO_0000673
so part of: GQX59_RS13435
location: complement(19787..20788)
location: region:19787-20788:-1
so has part: feature:19787-20788:-1:exon

WP_047100888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19787-20788:-1:exon

GQX59_RS13440
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13440
old locus tag: GQX59_13415
so part of: sequence
location: complement(20797..21825)
location: region:20797-21825:-1
so has part: feature:20797-21825:-1:exon
subclass of: SO_0000010

63964029
type: Gene
SIO_000068: ncbigene

position:20797:-1
position: 20797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21825:-1
position: 21825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20797-21825:-1:exon

GQX59_RS13440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13440
old locus tag: GQX59_13415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020064993.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rhamnan synthesis F family protein
translation: MKYNTKFANKNYLIQKNYTEEIKKLKIGIHIHLYYIDMMDMFIKYLKDSPIEFDLFITTSKEENKDICLNAFNKLPKLKNITIFIVENIGRDIAPWLIECNNIQNNYDLFCHLHTKKSLHWESINEWGEYLIENLISEEAINNILSNFILDDNIGIISPHIYYYLFPYILYIDKDDMHHIKLLLNKLNINFEPKPENFVFPVGSMLWYRPKVLKPLFDLNLKYSDFPQEPIPKTGTIAHAIERIIGIICEQSNYKFKFYINNNSYINNTFALYDETADKYYIKKYLDKGKFKDIFIDYDIRVKRNIFNILEIGSFSLFNLYLYGPNLVIILFGLKITLRIKK
SIO_010081: GQX59_RS13440
subclass of: SO_0000673
so part of: GQX59_RS13440
location: complement(20797..21825)
location: region:20797-21825:-1
so has part: feature:20797-21825:-1:exon

WP_047100887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20797-21825:-1:exon

GQX59_RS13445
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13445
old locus tag: GQX59_13420
so part of: sequence
location: complement(21845..23674)
location: region:21845-23674:-1
so has part: feature:21845-23674:-1:exon
subclass of: SO_0000010

63964030
type: Gene
SIO_000068: ncbigene

position:21845:-1
position: 21845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23674:-1
position: 23674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21845-23674:-1:exon

GQX59_RS13445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13445
old locus tag: GQX59_13420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672148.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-grasp fold amidoligase family protein
translation: MKRLTIFAHYDKDNIIDDYVVYWLKYMNKLSDIILVSNNDLPIEESKKVEKLVLKHFIGSHGGKGEKSIKIAYEYAYNNHILEKYDWLILISDSIYGPFFDIEPYIIGKEKKENICYGFTKAMVNTENEHIQGTFLAMPKKAFLSKEIYEHLINLDKLENKSDAVVYGEIKWSQILKNLGFKLEGMFDDIDSNYIKYEPVKPAFVEMIEKGYPFIRKTLFTKNYLLIENIKDYLKLKNIISKECFDNMQKNIDRTISKDILYINMQYPEIRKNIEKKQNILDQKYREEYNYPLEFLEVQTFIEKLIWLKLNYQTEKILKYSDKYTVRECLKDKIDNQLLIPLLGVYNNEIEVLSNLDLNKLDKNTLLCSTINDTKIYFNKNINYIQLLHLINFENSKYFSSLEWQYKYIKPRLLIYKDEYHIYDQGIHYKIFCFNSKPSVIKVISKQNNNAYANFYNLEWDKLDIIQEFTNIEYIEKPPYLKEMINIAEKLSNEFHIFVSVDFIGNNEKFYFDKFDFYSEELLHPINNKKYDLEWGSYIKIPNIQNEYLTLDKDIYLRTLIKYDILSLQLMKYKKELFSIRKVVDKIAWWIPFKSWRIKFRDKLYKSKN
SIO_010081: GQX59_RS13445
subclass of: SO_0000673
so part of: GQX59_RS13445
location: complement(21845..23674)
location: region:21845-23674:-1
so has part: feature:21845-23674:-1:exon

WP_052767780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21845-23674:-1:exon

GQX59_RS13450
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13450
old locus tag: GQX59_13425
so part of: sequence
location: complement(24025..25224)
location: region:24025-25224:-1
so has part: feature:24025-25224:-1:exon
subclass of: SO_0000010

63964031
type: Gene
SIO_000068: ncbigene

position:24025:-1
position: 24025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25224:-1
position: 25224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24025-25224:-1:exon

GQX59_RS13450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13450
old locus tag: GQX59_13425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002575788.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-grasp domain-containing protein
translation: MKKVLLLGGTHFQINSIKACKRLGHYTITCDYNPNNPGHKFADEYHEVSALDKEAVLKLAKELKIDGIVCYAADTAAVTASYVAEKMGLPGQPLKSVEILTNKDLFRKFLLDNGFNCPKAKGYTSTNIYKAINDWDIFKKPVMVKPVDSAGSKGVSKVVNKEDLEEKIKYALSFSRNNRFIIEEYVEKNGYQIAGDGFSVNGKLVFRCFANEHFNPNSIVPIGESFPYKPISEYTCHKVDKETQKLLDLLNMKTGAYNFDVRVNENDEVILMELGPRNGGNLIAEVIKYATNVDTAEYTIKASLGENCNDLQMKEVNGYWSCFMIHSKNNGILKEVKISDKLRENNIIEYNILSKINDKILSFDNSGGTIGTAILKFSSMDEMLEKMDNMDKYIKVITE
SIO_010081: GQX59_RS13450
subclass of: SO_0000673
so part of: GQX59_RS13450
location: complement(24025..25224)
location: region:24025-25224:-1
so has part: feature:24025-25224:-1:exon

WP_020065012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24025-25224:-1:exon

GQX59_RS13455
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13455
old locus tag: GQX59_13430
so part of: sequence
location: complement(25229..26257)
location: region:25229-26257:-1
so has part: feature:25229-26257:-1:exon
subclass of: SO_0000010

63964032
type: Gene
SIO_000068: ncbigene

position:25229:-1
position: 25229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26257:-1
position: 26257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25229-26257:-1:exon

GQX59_RS13455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13455
old locus tag: GQX59_13430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672155.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM/SPASM domain-containing protein
translation: MNKNKIKPKIETDPKNRTPLETVIPLNTPFVIVIEPSDKCNFKCNFCPTGDVELMKNTRGRHYGNMNFELFKKIVDDISGFKNDIKALRLYEHGEPLLNPELPNMIKYAKDSKKFNHIEFTTNAFLLKNELSLKIINSGLDQICISIEGINEQQYKEISNVSVDFNKLVNDITFFYKNRKQCKVYIKIFGDNLTENEKEIFYNTFYDISDQIFIESFGNIWPDFEFKSIEANKNRGLFNQELVDKNICPFIFYNIVIHSSGEISPCCADWKREIIIGNANTDNIVDVWNGDNLYSLQKEFLENGRTNVNNEVCKNCELVKYEAIDNIDKYRKELLKKYIKQG
SIO_010081: GQX59_RS13455
subclass of: SO_0000673
so part of: GQX59_RS13455
location: complement(25229..26257)
location: region:25229-26257:-1
so has part: feature:25229-26257:-1:exon

WP_047100885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25229-26257:-1:exon

GQX59_RS13460
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13460
old locus tag: GQX59_13435
so part of: sequence
location: complement(26308..27483)
location: region:26308-27483:-1
so has part: feature:26308-27483:-1:exon
subclass of: SO_0000010

63964033
type: Gene
SIO_000068: ncbigene

position:26308:-1
position: 26308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27483:-1
position: 27483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26308-27483:-1:exon

GQX59_RS13460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13460
old locus tag: GQX59_13435
EC number: 2.1.1.-
inference: COORDINATES: protein motif:HMM:NF024880.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MIAKRKCPLCHNEDVDLIHSLHYIYNRTINDLPENIDFVLCKKCSLVYNDMFSSQKEFDNYYKNNSLYDYSYTRTNIIEHYNCLDKTVQILSKYINQDSSILDIACGAGYLLSKLYDKGYNNLHGIDVSNAINSNRYKDKIDYINGNIFDVNNLFNKKFDLIILSDVIEHIFNLKILIKNVIDCLNENGIVYIKTPYIPYYKERHCLSIEHINHFSKRAFTYLALEYNLEIMEFGDSYFDKEKEIYVILKKIDFDSNQKIIYDFKKFINESYNNINYELINELEKSQKKVILWGIGLSILPILPKLKKLNIVHIVDTASKKHGKIIFNNKIINPDDITDKEAIILILPDLYYEGILNQVQELNLKNDIAFLQNRTEQNRTEQNRTEQNLLE
SIO_010081: GQX59_RS13460
subclass of: SO_0000673
so part of: GQX59_RS13460
location: complement(26308..27483)
location: region:26308-27483:-1
so has part: feature:26308-27483:-1:exon

WP_047100883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26308-27483:-1:exon

GQX59_RS13465
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13465
old locus tag: GQX59_13440
so part of: sequence
location: complement(27492..28511)
location: region:27492-28511:-1
so has part: feature:27492-28511:-1:exon
subclass of: SO_0000010

63964034
type: Gene
SIO_000068: ncbigene

position:27492:-1
position: 27492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28511:-1
position: 28511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27492-28511:-1:exon

GQX59_RS13465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13465
old locus tag: GQX59_13440
inference: COORDINATES: protein motif:HMM:NF027681.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent epimerase/dehydratase family protein
translation: MKKILYIGGNGNISWHCVQESINSGHEVYILNREETLLTRREIQPNIIKLKSDIRNIENTKKTINNIIFDCVIDFICYNEEHAKNDLNLFKNNTKQFIFISTVSVYKKETKYLPYKENSPKDINSKYSYAYNKIKAENTFIEAYKNYGFPITIVRPANTYDTIIPVSVGHNCFTVPQRCLDGKPILIAGDGTSLCTMMHSKDFAKAFNYLVCNYDLIGEEINISGDELLTWIDISKYLLEALNIKNTDFIHIPANDLININISISDNLKNSACFGNGVMSERIYCNIFDNSKIKSIAKNWKQSISFKKGIRDTINWMFEKNIRRRFNNELDSILDSLIK
SIO_010081: GQX59_RS13465
subclass of: SO_0000673
so part of: GQX59_RS13465
location: complement(27492..28511)
location: region:27492-28511:-1
so has part: feature:27492-28511:-1:exon

WP_020065015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27492-28511:-1:exon

GQX59_RS13470
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13470
old locus tag: GQX59_13445
so part of: sequence
location: complement(28603..29268)
location: region:28603-29268:-1
so has part: feature:28603-29268:-1:exon
subclass of: SO_0000010

63964035
type: Gene
SIO_000068: ncbigene

position:28603:-1
position: 28603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29268:-1
position: 29268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28603-29268:-1:exon

GQX59_RS13470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13470
old locus tag: GQX59_13445
inference: COORDINATES: protein motif:HMM:TIGR03570.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetyltransferase
translation: MKDIIIWGATGQAIVLEEIISDMGLNIVAFFDRNKKVKSPFDNIPIFYNKDNLLAFKNKYFSVAIGGTNGKDRVSISEMLLNLGFKSISIISKNAYISKSSCIMDGVQILPNATIMPRVTIGKYSIINTSASIDHECNIGKGVHIAPNATLSGCIEVGDYSFIGSGATILPRIKIGKNVIVGAGAVVTKDINDNKIVYGIPATEQNRTEQNRTEQNRTEQF
SIO_010081: GQX59_RS13470
subclass of: SO_0000673
so part of: GQX59_RS13470
location: complement(28603..29268)
location: region:28603-29268:-1
so has part: feature:28603-29268:-1:exon

WP_209299315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28603-29268:-1:exon

GQX59_RS13475
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13475
old locus tag: GQX59_13450
so part of: sequence
location: complement(29277..30401)
location: region:29277-30401:-1
so has part: feature:29277-30401:-1:exon
subclass of: SO_0000010

63964036
type: Gene
SIO_000068: ncbigene

position:29277:-1
position: 29277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30401:-1
position: 30401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29277-30401:-1:exon

GQX59_RS13475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13475
old locus tag: GQX59_13450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020065003.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DegT/DnrJ/EryC1/StrS aminotransferase family protein
translation: MQLGQIYYSKPSITQKEIDYATDAATNGWGNKCYEYIYKFENKFREYLNVKYTIATSSCTGALHMGLSALGIGPGDEVIAPDITWVASIAPVTYLGATPVLVDVNVDDWCINPKKVEETITEKTKAIIAVHLYGNLCNMDELLNISKKYNIPVIEDSAEALGSIYKNKVAGSMGVFSTFSFHGAKTLTTGEGGMFATNDDGLYNKVLTLSNHGRNKNQNKQFWSDVIGFKYKMSNIQAAIGCAQIERLDELINRKIEIFNLYKEKLQGLPLKLNYTPNDCKNGYWMTTAIFDEKINFNRDKLLEEFKNNNIDGRVFFWPLSLIFKDSIDAKKIILKEHTSVSYSIYNRAINLPCYHDITEDDINRVVNCIKKVL
SIO_010081: GQX59_RS13475
subclass of: SO_0000673
so part of: GQX59_RS13475
location: complement(29277..30401)
location: region:29277-30401:-1
so has part: feature:29277-30401:-1:exon

WP_047100905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29277-30401:-1:exon

GQX59_RS13480
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13480
old locus tag: GQX59_13455
so part of: sequence
location: complement(30498..31712)
location: region:30498-31712:-1
so has part: feature:30498-31712:-1:exon
subclass of: SO_0000010

63964037
type: Gene
SIO_000068: ncbigene

position:30498:-1
position: 30498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31712:-1
position: 31712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30498-31712:-1:exon

GQX59_RS13480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13480
old locus tag: GQX59_13455
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019882511.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MKCRHCNNELKYEFINLYNSPPSNSFLIDKELNEPEVLYPLKIYVCDKCFLVQIDEYKKSNEIFNSNYAYFSSYSKTWLEHAKTYVDDIIPRLGLTNKSLVTEIASNDGYLLQYFKMKDIPCIGIEPTHSTASVAISKGINVIEDFFSFELSKKLQKSDLILGNNVLAHVPDINNFVMGVKNLLKENGTATFEFPHLLNLINENQFDTIYHEHFSYLSLIAVKTIFEKFDLKIYDVKELKTHGGSLRIFISHKNNNNIKISNSVEYLINKEKKFKLDKIEGYSNFESRVQEIKFELLDFLLKAKRENKKVIAYGAAAKGNTLLNYCGIKSDLIDIVVDLSPHKQGKYMPLSHIPILSEDNILKYKPDYILILPWNLKEEIIKQLSYVREWNCKFITAIPNLVLE
SIO_010081: GQX59_RS13480
subclass of: SO_0000673
so part of: GQX59_RS13480
location: complement(30498..31712)
location: region:30498-31712:-1
so has part: feature:30498-31712:-1:exon

WP_020065002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30498-31712:-1:exon

GQX59_RS13485
type: Gene
subclass of: SO_0000704
RO_0002162: 159
locus tag: GQX59_RS13485
old locus tag: GQX59_13460
so part of: sequence
location: complement(31716..32255)
location: region:31716-32255:-1
so has part: feature:31716-32255:-1:exon
subclass of: SO_0000010

63964038
type: Gene
SIO_000068: ncbigene

position:31716:-1
position: 31716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32255:-1
position: 32255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31716-32255:-1:exon

GQX59_RS13485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 159
locus tag: GQX59_RS13485
old locus tag: GQX59_13460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012672158.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase family protein
translation: MTIEKTNIEGLYLLKNNSFEDERGYFLRIFCNDTLKKYHLDFNIKQSSISYNNKKYTVRGMHYQNYPYGEIKLVRCIKGKIFDVIADIRKDSPTFGEKFNIELYENDGKMIYISPYLAHGFQTLEDNTIVCYFMDTSFVPEASIGFNWEDPFFNISWPFKYNITISEKDKNMPNFNSRI
SIO_010081: GQX59_RS13485
subclass of: SO_0000673
so part of: GQX59_RS13485
location: complement(31716..32255)
location: region:31716-32255:-1
so has part: feature:31716-32255:-1:exon

WP_020065001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31716-32255:-1:exon