Brachyspira hyodysenteriae strain Bh743-7 plasmid pBh743-7x, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Brachyspirales; Brachyspiraceae; Brachyspira.
Complete genome sequences Brachyspira hyodysenteriae causing swine dysentery in Switzerland
Submitted (11-DEC-2019) Institute of Veterinary Bacteriology, University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP046933.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: OCT-2019\nAssembly Method :: Unicycler v. v0.4.4\nAssembly Name :: Bh743-7_ONT_Ill_HyB_UC\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: Oxford Nanopore MinION + Illumina NovaSeq\n 6000 S2 PE150 XP\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 03:54:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,706\nCDSs (total) :: 2,666\nGenes (coding) :: 2,652\nCDSs (with protein) :: 2,652\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 34\nncRNAs :: 3\nPseudo Genes (total) :: 14\nCDSs (without protein) :: 14\nPseudo Genes (ambiguous residues) :: 0 of 14\nPseudo Genes (frameshifted) :: 3 of 14\nPseudo Genes (incomplete) :: 8 of 14\nPseudo Genes (internal stop) :: 4 of 14\nPseudo Genes (multiple problems) :: 1 of 14\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011987008.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020064990.1
GO:0047343 - glucose-1-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate cytidylyltransferase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012672161.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672162.1
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012672164.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012672165.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013681.2
COORDINATES: similar to AA sequence:RefSeq:WP_020065006.1
COORDINATES: similar to AA sequence:RefSeq:WP_002668885.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020065008.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_012672170.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020005707.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020065010.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672173.1
ATP-grasp fold amidoligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013242966.1
COORDINATES: similar to AA sequence:RefSeq:WP_020064996.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672145.1
COORDINATES: similar to AA sequence:RefSeq:WP_020064994.1
COORDINATES: similar to AA sequence:RefSeq:WP_020064993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672148.1
COORDINATES: similar to AA sequence:RefSeq:WP_002575788.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672155.1
radical SAM/SPASM domain-containing protein
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF027681.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:TIGR03570.1
COORDINATES: similar to AA sequence:RefSeq:WP_020065003.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019882511.1
COORDINATES: similar to AA sequence:RefSeq:WP_012672158.1
dTDP-4-dehydrorhamnose 3,5-epimerase family protein