Moellerella wisconsensis strain W65 plasmid pW65-b, complete sequence.
type: Entry
definition: Moellerella wisconsensis strain W65 plasmid pW65-b, complete sequence.
sequence version: NZ_CP093244.1
sequence date: 2023-04-06
sequence: sequence
division: CON
label: NZ_CP093244.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN26537326
keyword: RefSeq
source: Moellerella wisconsensis
organism: Moellerella wisconsensis
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Moellerella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP093244.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x, 60x\nSequencing Technology :: Illumina MiniSeq, Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/03/2023 04:35:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,592\nCDSs (total) :: 3,485\nGenes (coding) :: 3,413\nCDSs (with protein) :: 3,413\nGenes (RNA) :: 107\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 5\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 25 of 72\nPseudo Genes (incomplete) :: 55 of 72\nPseudo Genes (internal stop) :: 26 of 72\nPseudo Genes (multiple problems) :: 27 of 72\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4509
topology: circular
so has quality: SO_0000988
location: 1..4509
location: region:1-4509:1
RO_0002162: 158849

NZ_CP093244
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN26537326
type: BioSample
SIO_000068: biosample

1
title: ESBL-producing Moellerella wisconsensis and Escherichia marmotae isolated from wild game meat
author: Biggel, M.
journal: Unpublished

2
title: Direct Submission
author: Biggel, M.
journal: Submitted (09-MAR-2022) Institute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich 8057, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4509:1
position: 4509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4509:1:source
so part of: sequence
organism: Moellerella wisconsensis
mol type: genomic DNA
strain: W65
isolation source: Food: Red deer meat
plasmid: pW65-b
country: Switzerland
collection date: 2021
collected by: Institute for Food Safety and Hygiene, University of Zurich

158849
type: Taxonomy
SIO_000068: taxonomy

MNY66_RS17880
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17880
old locus tag: MNY66_17880
so part of: sequence
location: complement(join(4344..4509,1..1082))
location: region:1-4509:-1
so has part: feature:1-1082:-1:exon
so has part: feature:4344-4509:-1:exon
subclass of: SO_0000010

79719182
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4509:-1
position: 4509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1082:-1:exon

position:1082:-1
position: 1082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4344-4509:-1:exon

position:4344:-1
position: 4344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MNY66_RS17880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17880
old locus tag: MNY66_17880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MGCLSFEEENIPDYHKTAIMDRFEKHVFAGLEKEQYNITWVEHTDKNRLELNFYIPNVELTSQKRLQPYYDKADRPLIENFKQVINHEYGLTDPRSPDKQQTLITRADLPTEKRSALKEIDAGISALVQTGLIRNRDDVIEALKQSGLEIARVTPKNLSIKTDGQNLRLKGAFYEQDFKFSADVLRECQARQRDYDGESETRYRTARERLESATGRRQQEFERKYPSRADEIDQAYRERVEITVHHSGRTGADIGRDQSVSHVLERERIPEPDRLETVSRDIPDAEPQYQTDQLHHGRQEQATVRRRRSGISERKLGREERSLQNFSEVSHHDRDRTTLRERLEYLVTTARDRYQQFISACRGTRDTEQSVSYAIQGNQSTVGDFNRTAEQVSERLTQQIQRQEVKRDRGFSIGF
SIO_010081: MNY66_RS17880
subclass of: SO_0000673
so part of: MNY66_RS17880
location: complement(join(4344..4509,1..1082))
location: region:1-4509:-1
so has part: feature:1-1082:-1:exon
so has part: feature:4344-4509:-1:exon

WP_241502047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1082:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4344-4509:-1:exon

MNY66_RS17885
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17885
old locus tag: MNY66_17885
so part of: sequence
location: complement(1237..1548)
location: region:1237-1548:-1
so has part: feature:1237-1548:-1:exon
subclass of: SO_0000010

79719183
type: Gene
SIO_000068: ncbigene

position:1237:-1
position: 1237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1548:-1
position: 1548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1237-1548:-1:exon

MNY66_RS17885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17885
old locus tag: MNY66_17885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005618548.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MTTKRTETVIIRLTPDEKQSLLLRKTKPRLAEWLRELALGQKPKRQPKSVDPALLFELNRIGVNLNQIARHCHQAPVSMETVNIALALRHIESQLREVLDRAG
SIO_010081: MNY66_RS17885
subclass of: SO_0000673
so part of: MNY66_RS17885
location: complement(1237..1548)
location: region:1237-1548:-1
so has part: feature:1237-1548:-1:exon

WP_151261784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1237-1548:-1:exon

MNY66_RS17890
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17890
old locus tag: MNY66_17890
so part of: sequence
location: 1694..1861
location: region:1694-1861:1
so has part: feature:1694-1861:1:exon
subclass of: SO_0000010

79719184
type: Gene
SIO_000068: ncbigene

position:1694:1
position: 1694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1861:1
position: 1861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1694-1861:1:exon

MNY66_RS17890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17890
old locus tag: MNY66_17890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000165970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rop family plasmid primer RNA-binding protein
translation: MTKQEKVIVNIAKFLQAQSLLLLEKLNELNSDKLDAETNLCEERHEQRSTKLGKE
SIO_010081: MNY66_RS17890
subclass of: SO_0000673
so part of: MNY66_RS17890
location: 1694..1861
location: region:1694-1861:1
so has part: feature:1694-1861:1:exon

WP_241502048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1694-1861:1:exon

MNY66_RS17895
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17895
old locus tag: MNY66_17895
so part of: sequence
location: complement(2167..2334)
location: region:2167-2334:-1
so has part: feature:2167-2334:-1:exon
subclass of: SO_0000010

79719185
type: Gene
SIO_000068: ncbigene

position:2167:-1
position: 2167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2334:-1
position: 2334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2167-2334:-1:exon

MNY66_RS17895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17895
old locus tag: MNY66_17895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYKTTETKFCATSLAVIAVTLQGFQRNNSVHPVTKGYRQWRFCVSVRVGFKRTVT
SIO_010081: MNY66_RS17895
subclass of: SO_0000673
so part of: MNY66_RS17895
location: complement(2167..2334)
location: region:2167-2334:-1
so has part: feature:2167-2334:-1:exon

WP_241502049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2167-2334:-1:exon

MNY66_RS17900
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17900
old locus tag: MNY66_17900
so part of: sequence
location: complement(2473..3393)
location: region:2473-3393:-1
so has part: feature:2473-3393:-1:exon
subclass of: SO_0000010

79719186
type: Gene
SIO_000068: ncbigene

position:2473:-1
position: 2473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3393:-1
position: 3393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2473-3393:-1:exon

MNY66_RS17900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17900
old locus tag: MNY66_17900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFFSSIVSFIFEASGFISNILKKGTDLFSTVDLSSKYDDIEKTFDFYQKIKRGNTPSHYSSSLVIDDELNSFSSNKNELSEKVSLHGSDIEEIKERLKDWNDIMGLRIDLSRLLSSALMIERASSNAQMHSSNLNIHHQSIKNISGLMTDVNSIRYGLKKIISTLNHNINKINSSGSVNLDKIENVDIDIKQGEAPQIATLEAFDTTRSLLIKEIKTIQILSREHIVEVNSFKRKVASYGGGFAGKVIQILDQNITPRLRDASKLALLLESDLRHIPVPKRNENGQFITKVGDSGIEIEFDFSET
SIO_010081: MNY66_RS17900
subclass of: SO_0000673
so part of: MNY66_RS17900
location: complement(2473..3393)
location: region:2473-3393:-1
so has part: feature:2473-3393:-1:exon

WP_241502044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2473-3393:-1:exon

MNY66_RS17905
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17905
old locus tag: MNY66_17905
so part of: sequence
location: complement(3716..3991)
location: region:3716-3991:-1
so has part: feature:3716-3991:-1:exon
subclass of: SO_0000010

79719187
type: Gene
SIO_000068: ncbigene

position:3716:-1
position: 3716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3991:-1
position: 3991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3716-3991:-1:exon

MNY66_RS17905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17905
old locus tag: MNY66_17905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006891681.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MLIPVQSSAFKSDVKRQKKRGKDMGKLKTLIELLVNENDIPPEYVDHPLSGNWRGYRDAHIEGDWLLIYKVDDDALRLARTGTHQDIFSNY
SIO_010081: MNY66_RS17905
subclass of: SO_0000673
so part of: MNY66_RS17905
location: complement(3716..3991)
location: region:3716-3991:-1
so has part: feature:3716-3991:-1:exon

WP_241502045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3716-3991:-1:exon

MNY66_RS17910
type: Gene
subclass of: SO_0000704
RO_0002162: 158849
locus tag: MNY66_RS17910
old locus tag: MNY66_17910
so part of: sequence
location: complement(3991..4248)
location: region:3991-4248:-1
so has part: feature:3991-4248:-1:exon
subclass of: SO_0000010

79719188
type: Gene
SIO_000068: ncbigene

position:4248:-1
position: 4248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3991-4248:-1:exon

MNY66_RS17910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158849
locus tag: MNY66_RS17910
old locus tag: MNY66_17910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019567581.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MIADATVKARIPQDVKDRAVQALEKIGLNTSDVIRMVMMRVADEGKLPFEVKTPNKKTQVAMSELDSGKGQRFDSVDALFDDLGI
SIO_010081: MNY66_RS17910
subclass of: SO_0000673
so part of: MNY66_RS17910
location: complement(3991..4248)
location: region:3991-4248:-1
so has part: feature:3991-4248:-1:exon

WP_241502046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3991-4248:-1:exon