Enterobacter hormaechei strain FDAARGOS 1435 plasmid unnamed, complete sequence.
type: Entry
definition: Enterobacter hormaechei strain FDAARGOS 1435 plasmid unnamed, complete sequence.
sequence version: NZ_CP077393.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP077393.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16357577
keyword: RefSeq
source: Enterobacter hormaechei
organism: Enterobacter hormaechei
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP077393.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v.\n 3.14.1\nGenome Coverage :: 1596.26x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 05:19:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,602\nCDSs (total) :: 4,486\nGenes (coding) :: 4,436\nCDSs (with protein) :: 4,436\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 7\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 19 of 50\nPseudo Genes (incomplete) :: 32 of 50\nPseudo Genes (internal stop) :: 10 of 50\nPseudo Genes (multiple problems) :: 10 of 50\nPseudo Genes (short protein) :: 1 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4995
topology: circular
so has quality: SO_0000988
location: 1..4995
location: region:1-4995:1
RO_0002162: 158836

NZ_CP077393
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16357577
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
journal: Unpublished

2
title: Direct Submission
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
journal: Submitted (17-JUN-2021) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, White Oak, MD 20903, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4995:1
position: 4995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4995:1:source
so part of: sequence
organism: Enterobacter hormaechei
mol type: genomic DNA
strain: FDAARGOS 1435
culture collection: DSM:46348
plasmid: unnamed
country: Germany: Braunschweig
collected by: DSMZ

158836
type: Taxonomy
SIO_000068: taxonomy

I6L65_RS22920
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22920
old locus tag: I6L65_22920
so part of: sequence
location: 215..538
location: region:215-538:1
so has part: feature:215-538:1:exon
subclass of: SO_0000010

72534968
type: Gene
SIO_000068: ncbigene

position:215:1
position: 215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538:1
position: 538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215-538:1:exon

I6L65_RS22920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22920
old locus tag: I6L65_22920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000957083.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MLTMWVTEDEHRRLLERCDGRQLAAWMRQICLDEKPARSGKLPSISPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
SIO_010081: I6L65_RS22920
subclass of: SO_0000673
so part of: I6L65_RS22920
location: 215..538
location: region:215-538:1
so has part: feature:215-538:1:exon

WP_012477689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:215-538:1:exon

I6L65_RS22925
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22925
old locus tag: I6L65_22925
pseudo: true
so part of: sequence
location: 528..>1181
location: region:528-1181:1
so has part: feature:528-1181:1:exon
subclass of: SO_0000010

72534969
type: Gene
SIO_000068: ncbigene

position:528:1
position: 528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1181:1
position: 1181
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528-1181:1:exon

I6L65_RS22925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22925
old locus tag: I6L65_22925
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: I6L65_RS22925
subclass of: SO_0000673
so part of: I6L65_RS22925
location: 528..>1181
location: region:528-1181:1
so has part: feature:528-1181:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:528-1181:1:exon

I6L65_RS22930
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22930
old locus tag: I6L65_22930
so part of: sequence
location: 1216..1707
location: region:1216-1707:1
so has part: feature:1216-1707:1:exon
subclass of: SO_0000010

72534970
type: Gene
SIO_000068: ncbigene

position:1216:1
position: 1216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1707:1
position: 1707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1216-1707:1:exon

I6L65_RS22930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22930
old locus tag: I6L65_22930
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MSSLLTLAKDLEQQSKAQQQSTGEMLKAAFSEHEQSVRAELSASARRISDAILAHEQSMSEAMEKNRRSVLRTAGRTWLTILMVSALLIGTSGSILWWQGQQITDNYTHLRQQEDTLAKMTARTWGVRYQESSDGRRFLILPPGMQTEAIPYDGTTWIRLKQE
SIO_010081: I6L65_RS22930
subclass of: SO_0000673
so part of: I6L65_RS22930
location: 1216..1707
location: region:1216-1707:1
so has part: feature:1216-1707:1:exon

WP_000096688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1216-1707:1:exon

I6L65_RS22935
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22935
old locus tag: I6L65_22935
so part of: sequence
location: 1714..1929
location: region:1714-1929:1
so has part: feature:1714-1929:1:exon
subclass of: SO_0000010

72534971
type: Gene
SIO_000068: ncbigene

position:1714:1
position: 1714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1929:1
position: 1929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1714-1929:1:exon

I6L65_RS22935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22935
old locus tag: I6L65_22935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000137422.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeD family mobilization/exclusion protein
translation: MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENAMLNERVSDLSTQVLSLSEQLRRLSGN
SIO_010081: I6L65_RS22935
subclass of: SO_0000673
so part of: I6L65_RS22935
location: 1714..1929
location: region:1714-1929:1
so has part: feature:1714-1929:1:exon

WP_029590204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1714-1929:1:exon

I6L65_RS22940
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22940
old locus tag: I6L65_22940
so part of: sequence
location: complement(2416..2643)
location: region:2416-2643:-1
so has part: feature:2416-2643:-1:exon
subclass of: SO_0000010

72534972
type: Gene
SIO_000068: ncbigene

position:2416:-1
position: 2416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2643:-1
position: 2643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2416-2643:-1:exon

I6L65_RS22940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22940
old locus tag: I6L65_22940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGYHYKELTVIELTAEEFELHKEGYSLELLTNMRNEEHTKYWEVCPSCEGKMDPEENQGHEGYCATCWLDNPDWW
SIO_010081: I6L65_RS22940
subclass of: SO_0000673
so part of: I6L65_RS22940
location: complement(2416..2643)
location: region:2416-2643:-1
so has part: feature:2416-2643:-1:exon

WP_053504437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2416-2643:-1:exon

I6L65_RS22945
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22945
old locus tag: I6L65_22945
so part of: sequence
location: complement(2779..2982)
location: region:2779-2982:-1
so has part: feature:2779-2982:-1:exon
subclass of: SO_0000010

72534973
type: Gene
SIO_000068: ncbigene

position:2779:-1
position: 2779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2982:-1
position: 2982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2779-2982:-1:exon

I6L65_RS22945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22945
old locus tag: I6L65_22945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017191052.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIYVGPHSKVGRNGGSFQECDINTTNHTVTRKYGRYCTIRDNEYAPPTSVPGRHWLQIFRTPDNTE
SIO_010081: I6L65_RS22945
subclass of: SO_0000673
so part of: I6L65_RS22945
location: complement(2779..2982)
location: region:2779-2982:-1
so has part: feature:2779-2982:-1:exon

WP_071686691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2779-2982:-1:exon

I6L65_RS22950
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22950
old locus tag: I6L65_22950
so part of: sequence
location: 3424..3756
location: region:3424-3756:1
so has part: feature:3424-3756:1:exon
subclass of: SO_0000010

72534974
type: Gene
SIO_000068: ncbigene

position:3424:1
position: 3424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3756:1
position: 3756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3424-3756:1:exon

I6L65_RS22950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22950
old locus tag: I6L65_22950
inference: COORDINATES: protein motif:HMM:NF017757.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MSNDENEYTFKPVNAQAIKALKSLPEWVQAAFVHALDSVFYGVDPGMSIAHLTVIGPGVVELRINGRPAYRCVYRSKAPGQVDLLHAFVKTCQGPDKKNMATTASRYKLL
SIO_010081: I6L65_RS22950
subclass of: SO_0000673
so part of: I6L65_RS22950
location: 3424..3756
location: region:3424-3756:1
so has part: feature:3424-3756:1:exon

WP_045332894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3424-3756:1:exon

I6L65_RS22955
type: Gene
subclass of: SO_0000704
RO_0002162: 158836
locus tag: I6L65_RS22955
old locus tag: I6L65_22955
so part of: sequence
location: complement(3772..4080)
location: region:3772-4080:-1
so has part: feature:3772-4080:-1:exon
subclass of: SO_0000010

72534975
type: Gene
SIO_000068: ncbigene

position:3772:-1
position: 3772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4080:-1
position: 4080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3772-4080:-1:exon

I6L65_RS22955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158836
locus tag: I6L65_RS22955
old locus tag: I6L65_22955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003341209.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKNSFELISTDPVKFNTWSIKSKLIIIIRKLMIDNKWSQSEAAEKLGISQPRVSNMLNGKLDKFSVDTLLEMVFKMGYKLDMDFTPLNTESPLTMVVKKAMV
SIO_010081: I6L65_RS22955
subclass of: SO_0000673
so part of: I6L65_RS22955
location: complement(3772..4080)
location: region:3772-4080:-1
so has part: feature:3772-4080:-1:exon

WP_012477691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3772-4080:-1:exon