Lentilactobacillus hilgardii strain FLUB plasmid unnamed1.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lentilactobacillus.
Submitted (16-DEC-2019) Department of Biotechnology, Microbiology and Human Nutrition, University of Life Sciences in Lublin, Akademicka 13, Lublin 20-950, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP047122.1.\nBacteria and source DNA available from Department of Biotechnology,\nMicrobiology and Human Nutrition, University of Life Sciences in\nLublin.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. v3.0; SPAdes v. v3.11.1\nAssembly Name :: FLUB\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/24/2022 02:12:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,049\nCDSs (total) :: 2,970\nGenes (coding) :: 2,935\nCDSs (with protein) :: 2,935\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 3\nPseudo Genes (total) :: 35\nCDSs (without protein) :: 35\nPseudo Genes (ambiguous residues) :: 0 of 35\nPseudo Genes (frameshifted) :: 17 of 35\nPseudo Genes (incomplete) :: 22 of 35\nPseudo Genes (internal stop) :: 6 of 35\nPseudo Genes (multiple problems) :: 8 of 35\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_005728424.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010620892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002824596.1
COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
COORDINATES: similar to AA sequence:RefSeq:WP_002825295.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016497299.1
GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
CopY/TcrY family copper transport repressor
COORDINATES: similar to AA sequence:RefSeq:WP_003660027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333962.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003553346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011674189.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591692.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076612170.1
COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
COORDINATES: similar to AA sequence:RefSeq:WP_017865331.1
COORDINATES: similar to AA sequence:RefSeq:WP_010580843.1
COORDINATES: similar to AA sequence:RefSeq:WP_010018136.1
COORDINATES: protein motif:HMM:NF012621.2
COORDINATES: similar to AA sequence:RefSeq:WP_000238943.1
COORDINATES: protein motif:HMM:NF012722.2
GO:0007165 - signal transduction [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: protein motif:HMM:NF033520.1
COORDINATES: protein motif:HMM:NF015898.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006499426.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_003678289.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_006499561.1
COORDINATES: similar to AA sequence:RefSeq:WP_003678283.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003678278.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB
COORDINATES: similar to AA sequence:RefSeq:WP_007724303.1
COORDINATES: similar to AA sequence:RefSeq:WP_002817475.1
COORDINATES: similar to AA sequence:RefSeq:WP_004898347.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: protein motif:HMM:NF025304.2
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: similar to AA sequence:RefSeq:WP_013356270.1