Halosiccatus urmianus strain IBRC-M: 10911 plasmid unnamed4, complete sequence.
type: Entry
definition: Halosiccatus urmianus strain IBRC-M: 10911 plasmid unnamed4, complete sequence.
sequence version: NZ_CP084094.1
sequence date: 2022-10-21
sequence: sequence
division: CON
label: NZ_CP084094.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN21591356
keyword: RefSeq
source: Halosiccatus urmianus
organism: Halosiccatus urmianus
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halosiccatus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP084094.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 500.5x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 08:38:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,293\nCDSs (total) :: 4,228\nGenes (coding) :: 4,137\nCDSs (with protein) :: 4,137\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 46 of 91\nPseudo Genes (incomplete) :: 51 of 91\nPseudo Genes (internal stop) :: 24 of 91\nPseudo Genes (multiple problems) :: 27 of 91\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4491
topology: circular
so has quality: SO_0000988
location: 1..4491
location: region:1-4491:1
RO_0002162: 1586233

NZ_CP084094
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN21591356
type: BioSample
SIO_000068: biosample

1
title: Halophilic archaea isolated from solar salterns and salt lakes
author: Cui, H.-L.
journal: Unpublished

2
title: Direct Submission
author: Cui, H.-L.
journal: Submitted (24-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4491:1
position: 4491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4491:1:source
so part of: sequence
organism: Halosiccatus urmianus
mol type: genomic DNA
strain: IBRC-M: 10911
isolation source: salt lake
type material: type strain of Halosiccatus urmianus
plasmid: unnamed4
country: Iran: Urmia salt lake
collection date: 2016

1586233
type: Taxonomy
SIO_000068: taxonomy

LCY71_RS21330
type: Gene
subclass of: SO_0000704
RO_0002162: 1586233
locus tag: LCY71_RS21330
so part of: sequence
location: 120..440
location: region:120-440:1
so has part: feature:120-440:1:exon
subclass of: SO_0000010

67802534
type: Gene
SIO_000068: ncbigene

position:120:1
position: 120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:440:1
position: 440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120-440:1:exon

LCY71_RS21330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1586233
locus tag: LCY71_RS21330
inference: COORDINATES: protein motif:HMM:NF013561.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MSRKSITVRIREDLIDRLDEEADERDVSRSEYIRGILEDRHRAEELAERVERLEERLEEREDRIATLEEQLARRSNIEEKIDTLAKQEQHEEAPFFIKWYRWWKRQ
SIO_010081: LCY71_RS21330
subclass of: SO_0000673
so part of: LCY71_RS21330
location: 120..440
location: region:120-440:1
so has part: feature:120-440:1:exon

WP_225336652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120-440:1:exon

LCY71_RS21335
type: Gene
subclass of: SO_0000704
RO_0002162: 1586233
locus tag: LCY71_RS21335
so part of: sequence
location: 469..714
location: region:469-714:1
so has part: feature:469-714:1:exon
subclass of: SO_0000010

67802535
type: Gene
SIO_000068: ncbigene

position:469:1
position: 469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714:1
position: 714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:469-714:1:exon

LCY71_RS21335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1586233
locus tag: LCY71_RS21335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQPSSWELFQSVLIGSVAGIIASGVVNRGILYVAVNSFILWVLLIILLNGGKVLFEKIENYRDDEEEEEDRPYEDVNYAA
SIO_010081: LCY71_RS21335
subclass of: SO_0000673
so part of: LCY71_RS21335
location: 469..714
location: region:469-714:1
so has part: feature:469-714:1:exon

WP_225336653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:469-714:1:exon

LCY71_RS21340
type: Gene
subclass of: SO_0000704
RO_0002162: 1586233
locus tag: LCY71_RS21340
so part of: sequence
location: 2222..2395
location: region:2222-2395:1
so has part: feature:2222-2395:1:exon
subclass of: SO_0000010

67802536
type: Gene
SIO_000068: ncbigene

position:2222:1
position: 2222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2395:1
position: 2395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2222-2395:1:exon

LCY71_RS21340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1586233
locus tag: LCY71_RS21340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDSYRMTGIYIDSAALTRVMEIAREVDIYDSRREASDDSYEEITHFLCDYFERKEE
SIO_010081: LCY71_RS21340
subclass of: SO_0000673
so part of: LCY71_RS21340
location: 2222..2395
location: region:2222-2395:1
so has part: feature:2222-2395:1:exon

WP_225336654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2222-2395:1:exon

LCY71_RS21345
type: Gene
subclass of: SO_0000704
RO_0002162: 1586233
locus tag: LCY71_RS21345
so part of: sequence
location: 2520..2804
location: region:2520-2804:1
so has part: feature:2520-2804:1:exon
subclass of: SO_0000010

67802537
type: Gene
SIO_000068: ncbigene

position:2520:1
position: 2520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2804:1
position: 2804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2520-2804:1:exon

LCY71_RS21345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1586233
locus tag: LCY71_RS21345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIQKTTFTPDVGMVVEAPEQIGRKSVQRYGGGNGAVGHVAATIVGKGETTKWVVLRLDDDEGEIPEGSEVLGVDIAKDELWYMVPYGAYGGGR
SIO_010081: LCY71_RS21345
subclass of: SO_0000673
so part of: LCY71_RS21345
location: 2520..2804
location: region:2520-2804:1
so has part: feature:2520-2804:1:exon

WP_225336649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2520-2804:1:exon

LCY71_RS21350
type: Gene
subclass of: SO_0000704
RO_0002162: 1586233
locus tag: LCY71_RS21350
so part of: sequence
location: 2801..3445
location: region:2801-3445:1
so has part: feature:2801-3445:1:exon
subclass of: SO_0000010

67802538
type: Gene
SIO_000068: ncbigene

position:2801:1
position: 2801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3445:1
position: 3445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2801-3445:1:exon

LCY71_RS21350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1586233
locus tag: LCY71_RS21350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDGTTLTEARQRDGEAAEDRPEEVDRVVTPKERVGYEHELPLLDREYSEYPGGQELLQPDAEGILRNLKEHPRVTSTEDCADELGTTVEMVEKAAELHGIDLPEGGGFDVSIDRSRIDTLLGDEWPEDMRSSDNQITVSALYLKGLSLFEIATVLEDDGERNVREEELKQILIDAGLLEGLSSDEREFQRRQNRGEINQPRYEGGITIDATDL
SIO_010081: LCY71_RS21350
subclass of: SO_0000673
so part of: LCY71_RS21350
location: 2801..3445
location: region:2801-3445:1
so has part: feature:2801-3445:1:exon

WP_225336650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2801-3445:1:exon

LCY71_RS21355
type: Gene
subclass of: SO_0000704
RO_0002162: 1586233
locus tag: LCY71_RS21355
so part of: sequence
location: complement(3666..4373)
location: region:3666-4373:-1
so has part: feature:3666-4373:-1:exon
subclass of: SO_0000010

67802539
type: Gene
SIO_000068: ncbigene

position:3666:-1
position: 3666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4373:-1
position: 4373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3666-4373:-1:exon

LCY71_RS21355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1586233
locus tag: LCY71_RS21355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVTNTQRDFNLSLDGDSSTEEKVDALVEIVPKLLQENQQLREEKQRLQDRVDDLEDRVEDLQEDVKERSQHSAQERADICQRLSALEEGQEDTSDPMGGSGEDTLHDTVETPLEEIVALPEHTAEEQLTANQERARFIALDVEDYTRKVPAGRAIKSSEIRKVLKAREGSSPHTETVDRVIDFLERFGRGEVQVVKKRGERRVCFSNDLVERIQEIRTMDEDSLTVSVIGGAAGA
SIO_010081: LCY71_RS21355
subclass of: SO_0000673
so part of: LCY71_RS21355
location: complement(3666..4373)
location: region:3666-4373:-1
so has part: feature:3666-4373:-1:exon

WP_225336651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3666-4373:-1:exon