Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence.
Novosphingobium resinovorum (Sphingomonas subarctica)
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
Submitted (29-AUG-2016) Department of Biotechnology, University of Szeged, Kozep fasor 52., Szeged 6726, Hungary
REFSEQ INFORMATION: The reference sequence is identical to\nCP017078.1.\nBacteria available from Gabor Rakhely, University of Szeged\nDepartment of Biotechnology, Hungary.\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench v. 7\nGenome Coverage :: 240.1x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 20:33:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,521\nCDSs (total) :: 6,450\nGenes (coding) :: 6,269\nCDSs (with protein) :: 6,269\nGenes (RNA) :: 71\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 181\nCDSs (without protein) :: 181\nPseudo Genes (ambiguous residues) :: 0 of 181\nPseudo Genes (frameshifted) :: 78 of 181\nPseudo Genes (incomplete) :: 134 of 181\nPseudo Genes (internal stop) :: 30 of 181\nPseudo Genes (multiple problems) :: 52 of 181\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007015473.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015460580.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015460581.1
COORDINATES: similar to AA sequence:RefSeq:WP_017665381.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011111889.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007014111.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008997260.1
COORDINATES: similar to AA sequence:RefSeq:WP_008494673.1
COORDINATES: similar to AA sequence:RefSeq:WP_010542916.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502972.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017502973.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016747683.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014077229.1
COORDINATES: similar to AA sequence:RefSeq:WP_010338396.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_016747686.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012049899.1
COORDINATES: similar to AA sequence:RefSeq:WP_004208155.1
COORDINATES: similar to AA sequence:RefSeq:WP_017483138.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336786.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004210531.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004210532.1
COORDINATES: similar to AA sequence:RefSeq:WP_010336783.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010336782.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210536.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502963.1
GO:0016787 - hydrolase activity [Evidence IEA]
bifunctional protein tyrosine phosphatase family protein/NAD(P)/FAD-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017502964.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010336778.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210541.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_012321840.1
COORDINATES: similar to AA sequence:RefSeq:WP_013831444.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF037150.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00976.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019157.2
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_008830151.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830152.1
COORDINATES: similar to AA sequence:RefSeq:WP_010161711.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008829142.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_004209576.1
COORDINATES: similar to AA sequence:RefSeq:WP_019370812.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008827963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950542.1
COORDINATES: protein motif:HMM:NF033542.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020546003.1
COORDINATES: similar to AA sequence:RefSeq:WP_006435569.1
COORDINATES: similar to AA sequence:RefSeq:WP_008994500.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054120.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460554.1
COORDINATES: similar to AA sequence:RefSeq:WP_010668596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404987.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830449.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181619.1
COORDINATES: similar to AA sequence:RefSeq:WP_007405013.1
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_008830454.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006019933.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_014899891.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017980835.1
COORDINATES: similar to AA sequence:RefSeq:WP_007012770.1
COORDINATES: similar to AA sequence:RefSeq:WP_014160172.1
COORDINATES: similar to AA sequence:RefSeq:WP_011512789.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010513293.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976802.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007406227.1
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: similar to AA sequence:RefSeq:WP_014890429.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007686137.1
COORDINATES: similar to AA sequence:RefSeq:WP_003605576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012048459.1
COORDINATES: similar to AA sequence:RefSeq:WP_012048460.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054680.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406242.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219208.1
COORDINATES: similar to AA sequence:RefSeq:WP_006028603.1
GO:0016615 - malate dehydrogenase activity [Evidence IEA]
GO:0006108 - malate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011608156.1
COORDINATES: similar to AA sequence:RefSeq:WP_007011060.1
IS21-like element ISSsp5 family helper ATPase IstB
COORDINATES: nucleotide motif:Rfam:14.4:RF03058
sul1 is cis-regulatory element that is thought to sense ions involved in sulfur or methionine metabolism; They are found in Alphaproteobacteria; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_008996897.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449372.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183091.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008996270.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_007686136.1
voltage-gated chloride channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012752390.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318511.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849767.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008833348.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832728.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010217637.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164414.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183264.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008831909.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054422.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832813.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832692.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008832693.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_017502169.1
COORDINATES: similar to AA sequence:RefSeq:WP_020493507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832697.1
COORDINATES: similar to AA sequence:RefSeq:WP_008833459.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832842.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013846865.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828604.1
COORDINATES: similar to AA sequence:RefSeq:WP_018269073.1
COORDINATES: similar to AA sequence:RefSeq:WP_018250420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828608.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008828609.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251142.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818476.1
COORDINATES: protein motif:HMM:NF012993.2
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007406700.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832021.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405672.1
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_013039077.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008828249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015831.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011136762.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212750.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849922.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823969.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503361.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683376.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004212744.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004212743.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406374.1
GO:0006825 - copper ion transport [Evidence IEA]
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_004212741.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_007683370.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683367.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449251.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_007683363.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007683361.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406406.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820519.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039094.1
COORDINATES: protein motif:HMM:NF013694.2
COORDINATES: similar to AA sequence:RefSeq:WP_016743853.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501299.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016743854.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449259.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213138.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213136.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501296.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683345.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009823975.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212677.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683342.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_012449407.1
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: similar to AA sequence:RefSeq:WP_013831362.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013831361.1
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612021.1
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
IS6-like element IS6100 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014528793.1
COORDINATES: similar to AA sequence:RefSeq:WP_020127604.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015437.2
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004574519.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950653.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123421.1
COORDINATES: similar to AA sequence:RefSeq:WP_015929023.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007933853.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: similar to AA sequence:RefSeq:WP_015933891.1
COORDINATES: similar to AA sequence:RefSeq:WP_019959720.1
COORDINATES: similar to AA sequence:RefSeq:WP_007770639.1
COORDINATES: similar to AA sequence:RefSeq:WP_008839338.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505228.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558629.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067303.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312313.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098147.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098146.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654968.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312328.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_017273085.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312341.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_011505215.1
COORDINATES: protein motif:HMM:NF010405.0
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_011510441.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024846.2
COORDINATES: similar to AA sequence:RefSeq:WP_009572546.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975815.1
COORDINATES: similar to AA sequence:RefSeq:WP_019578357.1
COORDINATES: similar to AA sequence:RefSeq:WP_009515417.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_020681439.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: similar to AA sequence:RefSeq:WP_009516387.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018269212.1
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_003495445.1
COORDINATES: similar to AA sequence:RefSeq:WP_007016027.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633639.1
COORDINATES: similar to AA sequence:RefSeq:WP_012314035.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560454.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016212196.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008121567.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010023.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_013913803.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004119828.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974895.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989434.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_006023670.1
COORDINATES: similar to AA sequence:RefSeq:WP_009859467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654735.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472933.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012987825.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341879.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970281.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930445.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819616.1
sulfurtransferase/chromate resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_014131497.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010915768.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240812.1
COORDINATES: similar to AA sequence:RefSeq:WP_006698012.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_006021869.1
GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
adenosylmethionine--8-amino-7-oxononanoate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_011504617.1
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002713073.1
COORDINATES: similar to AA sequence:RefSeq:WP_018427653.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019198316.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002712838.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611865.1
COORDINATES: similar to AA sequence:RefSeq:WP_009867760.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611539.1
COORDINATES: similar to AA sequence:RefSeq:WP_012496466.1
5-carboxymethyl-2-hydroxymuconate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_006611905.1
COORDINATES: similar to AA sequence:RefSeq:WP_014491272.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611557.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006204617.1
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017183759.1
COORDINATES: similar to AA sequence:RefSeq:WP_009996985.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892288.1
COORDINATES: protein motif:HMM:NF016489.2
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010972923.1
COORDINATES: similar to AA sequence:RefSeq:WP_011511811.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_017502936.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399291.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845947.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502933.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200203.1
COORDINATES: similar to AA sequence:RefSeq:WP_011810041.1
COORDINATES: similar to AA sequence:RefSeq:WP_003536795.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010661809.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661810.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845952.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054145.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368229.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368230.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368231.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836224.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368234.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339513.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368236.1
COORDINATES: similar to AA sequence:RefSeq:WP_006953933.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407620.1
COORDINATES: protein motif:HMM:NF025867.2
COORDINATES: similar to AA sequence:RefSeq:WP_010338717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006022529.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004207060.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017503207.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010236724.1
GO:0004620 - phospholipase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017503206.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004207055.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_017503204.1
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611773.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010336143.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207026.1
COORDINATES: similar to AA sequence:RefSeq:WP_007407174.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017503238.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017502557.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503240.1
COORDINATES: similar to AA sequence:RefSeq:WP_005100728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503242.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207012.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611975.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207574.1
polyhydroxyalkanoic acid system family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004206979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006948580.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013831505.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013653249.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503705.1
acyl-CoA dehydrogenase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018250814.1
GO:0070403 - NAD+ binding [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008832266.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206967.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206966.1
COORDINATES: similar to AA sequence:RefSeq:WP_016744466.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004206964.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503287.1
MerR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019726113.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206961.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502580.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818174.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004206958.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820530.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054303.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181640.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_019054306.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015948.1
Mu transposase C-terminal domain-containing protein