Betta splendens mitochondrial DNA, complete genome.
type: Entry
definition: Betta splendens mitochondrial DNA, complete genome.
sequence version: NC_026581.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_026581.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Betta splendens (Siamese fighting fish)
organism: Betta splendens
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to AB571120.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16980
topology: circular
so has quality: SO_0000988
location: 1..16980
location: region:1-16980:1
RO_0002162: 158456

NC_026581
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Mitochondrial genome analysis of Siamese Fighting Fish
author: Srikulnath, K.
author: Swatdipong, A.
author: Indananda, C.
author: Peyachoknagul, S.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (24-FEB-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Srikulnath, K.
author: Swatdipong, A.
journal: Submitted (06-JUL-2010) Kasetsart University, Genetics; Paholyothin, Bangkok 10900, Thailand

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16980:1
position: 16980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16980:1:source
so part of: sequence
organism: Betta splendens
organelle: mitochondrion
mol type: genomic DNA
sex: male
tissue type: muscle
country: Thailand:Pathumthani, Lumlukka

158456
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Phe
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 158456
product: 12S ribosomal RNA
so part of: sequence
location: 71..1026
location: region:71-1026:1
so has part: feature:71-1026:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1026:1
position: 1026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1026:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Val
so part of: sequence
location: 1027..1099
location: region:1027-1099:1
so has part: feature:1027-1099:1:region

position:1027:1
position: 1027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1099:1
position: 1099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1027-1099:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 158456
product: 16S ribosomal RNA
so part of: sequence
location: 1100..2799
location: region:1100-2799:1
so has part: feature:1100-2799:1:region

position:1100:1
position: 1100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2799:1
position: 2799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1100-2799:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Leu
so part of: sequence
location: 2800..2874
location: region:2800-2874:1
so has part: feature:2800-2874:1:region

position:2800:1
position: 2800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2874:1
position: 2874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2800-2874:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND1
so part of: sequence
location: 2876..3850
location: region:2876-3850:1
so has part: feature:2876-3850:1:exon
subclass of: SO_0000010

23631943
type: Gene
SIO_000068: ncbigene

position:2876:1
position: 2876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3850:1
position: 3850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2876-3850:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MIHMLLTHIINPLKYMAPVFLPVAFFTLIEQKMRGYMQFQKGPNIVGPYGLLHPIADGIKLFFKKPVYPSTSPPPLFLFPPMLPFMLSLTLWAPLPMPFPGIEINLTILFIPPFSSLAVYSILGSGWASNSKYALIGALRAVPQTISYEESLGLILLNIIIISGGFTLQTFNIPQKSIWLIFPAGPLPAMWYVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTILFLGASYTPNTPEFTTTNIMTKSAFLSMLFLWIRASYPRLRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQF
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2876..3850
location: region:2876-3850:1
so has part: feature:2876-3850:1:exon

YP_009123847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2876-3850:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Ile
so part of: sequence
location: 3860..3929
location: region:3860-3929:1
so has part: feature:3860-3929:1:region

position:3860:1
position: 3860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3929:1
position: 3929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3860-3929:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Gln
so part of: sequence
location: complement(3939..4009)
location: region:3939-4009:-1
so has part: feature:3939-4009:-1:region

position:3939:-1
position: 3939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4009:-1
position: 4009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3939-4009:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Met
so part of: sequence
location: 4009..4077
location: region:4009-4077:1
so has part: feature:4009-4077:1:region

position:4009:1
position: 4009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4077:1
position: 4077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4009-4077:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND2
so part of: sequence
location: 4078..5123
location: region:4078-5123:1
so has part: feature:4078-5123:1:exon
subclass of: SO_0000010

23631936
type: Gene
SIO_000068: ncbigene

position:4078:1
position: 4078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5123:1
position: 5123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4078-5123:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5122..5123,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MSPYTLTIMIFGIGLGTTITLMSSHWLLAWMGLEINTLAMLPLMSQHNHPRAVQATTKYFLTQATAAAMLLFASTTNAWITGEWAIQQMTSLIPLTMITMPLTLKIGLAPMHSWLPEVLQGLDLNTGLIMSTWQKLAPFALLLQIQANNPTLLITLGLLSTLVGGWGGMNQTQLRKILAYSSIAHLGWMMLILPFSPSLTLITFITYIIMTCSTFMIFEINKATNINMLATSWAKAPTLTSLTPLVLLSLGGLPPLTGFMPKWLILQELTKQELTTTATFVAMTALLSLYFYLRLSYAMTLTMAPNNLPGTIPWRLQFKSFSMPLATTTMASITLLPIMPAMSTLLKL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4078..5123
location: region:4078-5123:1
so has part: feature:4078-5123:1:exon

YP_009123848.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4078-5123:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Trp
so part of: sequence
location: 5124..5194
location: region:5124-5194:1
so has part: feature:5124-5194:1:region

position:5124:1
position: 5124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5194:1
position: 5194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5124-5194:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Ala
so part of: sequence
location: complement(5196..5264)
location: region:5196-5264:-1
so has part: feature:5196-5264:-1:region

position:5196:-1
position: 5196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5264:-1
position: 5264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5196-5264:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Asn
so part of: sequence
location: complement(5266..5337)
location: region:5266-5337:-1
so has part: feature:5266-5337:-1:region

position:5266:-1
position: 5266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5337:-1
position: 5337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5266-5337:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 158456
note: a putative light-strand replication origin
so part of: sequence
location: 5338..5372
location: region:5338-5372:1
so has part: feature:5338-5372:1:region

position:5338:1
position: 5338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5372:1
position: 5372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5338-5372:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Cys
so part of: sequence
location: complement(5370..5435)
location: region:5370-5435:-1
so has part: feature:5370-5435:-1:region

position:5370:-1
position: 5370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5435:-1
position: 5435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5370-5435:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Tyr
so part of: sequence
location: complement(5436..5505)
location: region:5436-5505:-1
so has part: feature:5436-5505:-1:region

position:5436:-1
position: 5436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5505:-1
position: 5505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5436-5505:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5507..7066
location: region:5507-7066:1
so has part: feature:5507-7066:1:exon
subclass of: SO_0000010

23631937
type: Gene
SIO_000068: ncbigene

position:5507:1
position: 5507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7066:1
position: 7066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5507-7066:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGSLLGNDQIYNVIVTAHAFVMIFFMVMPMMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLTSAGVEAGAGTGWTVYPPLSGNLAHTGASVDLTIFSLHLAGVSSILGAINYINTIFNMKPLQMTQYQMPLCVWSVLITAFLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGSGMVSHVVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMVIAIPTGMKVFSWLATIHGGALKWEAPFLWALGFIFLFTVGGLTGIILANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFLHWFPLFTGYTLHETWAKAHFTVMFLGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTMSSIGSLVSFTAVLMLLYMIWEAFVSKREVLAVTMASTNVEWLHGCPPPYHTFEEPAFVQVQNRARE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5507..7066
location: region:5507-7066:1
so has part: feature:5507-7066:1:exon

YP_009123849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5507-7066:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Ser
so part of: sequence
location: complement(7058..7128)
location: region:7058-7128:-1
so has part: feature:7058-7128:-1:region

position:7058:-1
position: 7058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7128:-1
position: 7128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7058-7128:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Asp
so part of: sequence
location: 7132..7199
location: region:7132-7199:1
so has part: feature:7132-7199:1:region

position:7132:1
position: 7132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7199:1
position: 7199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7132-7199:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: COX2
so part of: sequence
location: 7205..7895
location: region:7205-7895:1
so has part: feature:7205-7895:1:exon
subclass of: SO_0000010

23631935
type: Gene
SIO_000068: ncbigene

position:7205:1
position: 7205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7895:1
position: 7895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7205-7895:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7895,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAYPSMLGFQDATSPIMEELLHFHDHAMIIVTLISSFVFYTITMMVITKLTYKSMLDSQEMEMVWTALPALILTMVALPSLRILYLMDELNFPNLTVKAVGHQWYWSYEYTDFEQLNFDSYMIPTQDLTPGQFRLLDTDNRMVVPVNSPIRVMVTADDVLHSWATPSLGIKLDAVPGRLNQTALMTSRPGVFYGQCSEICGANHSFMPIVVESIPLDHFEYWTHSMLNNA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7205..7895
location: region:7205-7895:1
so has part: feature:7205-7895:1:exon

YP_009123850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7205-7895:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Lys
so part of: sequence
location: 7896..7970
location: region:7896-7970:1
so has part: feature:7896-7970:1:region

position:7896:1
position: 7896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7970:1
position: 7970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7896-7970:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ATP8
so part of: sequence
location: 7972..8139
location: region:7972-8139:1
so has part: feature:7972-8139:1:exon
subclass of: SO_0000010

23631933
type: Gene
SIO_000068: ncbigene

position:7972:1
position: 7972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8139:1
position: 8139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7972-8139:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNTTPWLMILIFTWFVFLIFILPKVMTYIFPNEPTLKNKKTFMPWTWNWPWY
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7972..8139
location: region:7972-8139:1
so has part: feature:7972-8139:1:exon

YP_009123851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7972-8139:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ATP6
so part of: sequence
location: 8130..8813
location: region:8130-8813:1
so has part: feature:8130-8813:1:exon
subclass of: SO_0000010

23631932
type: Gene
SIO_000068: ncbigene

position:8130:1
position: 8130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8813:1
position: 8813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8130-8813:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMLNYFDQFASPIFLGVPLIALALTLPWLLFPTPSTRWLSNRLTSTQGMFISTFTQQLLLPVNKGGHKWALILISLMIFLVSLNMLGLMPYTFTPTTQLSMNLGLATPLWLATVIMGLHNQPTHALSHLLPEGTPTFLIPILIIIETISLIIRPLALGVRLTANLTAGHLLIQLIATAALVLLPLMPTVAFFTMILLFFLTLLEIAVAMIQAYVFVLLLSLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8130..8813
location: region:8130-8813:1
so has part: feature:8130-8813:1:exon

YP_009123852.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8130-8813:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: COX3
so part of: sequence
location: 8814..9603
location: region:8814-9603:1
so has part: feature:8814-9603:1:exon
subclass of: SO_0000010

23631931
type: Gene
SIO_000068: ncbigene

position:8814:1
position: 8814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9603:1
position: 9603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9603:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9603,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQAHTYHMVDPSPWPLTGAAAAFLLTWGIAIWFHYSSMTLVSLGLILLLLTMIQWWRDIIRESTYQGQHTPPVQKGLRYGMVLFISSEVLFFIGFFWAFYHSSLSPTPELGGVWPPTGITPLNPFEVPLLNTAVLLASGVTVTWTHHSIMAGERKQAIQSLSLTIILGLYFTTLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRTGSNSTLQHNTILALKQQLDTDILLMLFDYSCMSPSIDEDLK
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8814..9603
location: region:8814-9603:1
so has part: feature:8814-9603:1:exon

YP_009123853.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9603:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Gly
so part of: sequence
location: 9602..9673
location: region:9602-9673:1
so has part: feature:9602-9673:1:region

position:9602:1
position: 9602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9673:1
position: 9673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9602-9673:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND3
so part of: sequence
location: 9674..10022
location: region:9674-10022:1
so has part: feature:9674-10022:1:exon
subclass of: SO_0000010

23631934
type: Gene
SIO_000068: ncbigene

position:9674:1
position: 9674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10022:1
position: 10022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9674-10022:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10022,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLFTTIIIYHTLISPILATISFWLPQMNPDHEKLSPYECGFDPLGSACLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLTSPLSTFLWASTILILLTLGLVYEWIKGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9674..10022
location: region:9674-10022:1
so has part: feature:9674-10022:1:exon

YP_009123854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9674-10022:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Arg
so part of: sequence
location: 10023..10090
location: region:10023-10090:1
so has part: feature:10023-10090:1:region

position:10023:1
position: 10023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10090:1
position: 10090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10023-10090:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND4L
so part of: sequence
location: 10092..10388
location: region:10092-10388:1
so has part: feature:10092-10388:1:exon
subclass of: SO_0000010

23631938
type: Gene
SIO_000068: ncbigene

position:10092:1
position: 10092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10388:1
position: 10388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10092-10388:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFAFSSAFMLSLSGLAFYRTHLLSAFLCLEGMMLSLFIAISLWALQLDTTGFLTSPVLLLAFSACEASAGLALLVATARTHGTDRLQNLNLFQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10092..10388
location: region:10092-10388:1
so has part: feature:10092-10388:1:exon

YP_009123855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10092-10388:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND4
so part of: sequence
location: 10382..11762
location: region:10382-11762:1
so has part: feature:10382-11762:1:exon
subclass of: SO_0000010

23631940
type: Gene
SIO_000068: ncbigene

position:10382:1
position: 10382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11762:1
position: 11762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10382-11762:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11762,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILVPTLMLIPTTGLAPAKWLWSYILTHSFIIFVISLLWLKHISETGWTLLNLYMAADPLSIPLLILTCWLLPLMILASQNHMVYEPINRQRTFIVLLITLQTFLILAFNASEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLISLLLLQNYTGTLSILTIQYSHSMLLLTYGNKLWWAGCLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRMIVMLDPLTKTMIYPFIILALWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVTAGILIQTPWGFTGALILMIAHGLTSSALFCLANSNYERTHSRTLLLARGLQTILPLMTTWWFITCLANLALPPFPNLMGELMIITSLFNWTHWTIALTGAGTLITAIYSLYMFLMTQRGFTPAHMMALPPSYSREHLLMTLHILPLLLLIMKPELIWGWTA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10382..11762
location: region:10382-11762:1
so has part: feature:10382-11762:1:exon

YP_009123856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10382-11762:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-His
so part of: sequence
location: 11763..11832
location: region:11763-11832:1
so has part: feature:11763-11832:1:region

position:11763:1
position: 11763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11832:1
position: 11832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11763-11832:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Ser
so part of: sequence
location: 11833..11901
location: region:11833-11901:1
so has part: feature:11833-11901:1:region

position:11833:1
position: 11833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11833-11901:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Leu
so part of: sequence
location: 11904..11975
location: region:11904-11975:1
so has part: feature:11904-11975:1:region

position:11904:1
position: 11904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11975:1
position: 11975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11904-11975:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND5
so part of: sequence
location: 11989..13839
location: region:11989-13839:1
so has part: feature:11989-13839:1:exon
subclass of: SO_0000010

23631939
type: Gene
SIO_000068: ncbigene

position:11989:1
position: 11989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13839:1
position: 13839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11989-13839:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MKLFYACSASTCVVLILLLLLYPVILSFIRSKSPKFEIYYHSVIALGLSFYISMMLLLLSLILPINMTVTILPWTNTDVFDMDISLQFDLYSVMFMPVALYVTWQILEFAYTYMHADPQINRFFKYLLIFMTAMIIFVTANNLLQLFIGWEIMGIMSFLLIGWWHGRADANIAALQAMIYNRVGDIGLIYAMAWFAIIHNSWDIQHIFQLPQNEKINLPLIALIIAATGKSAQFSLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRMNPLMEFNPTILTICLCLGALTTFFSALCALTQNDIKKIVAFSTSSQLGLMMVAIGLNQPDLAFLHICTHAFFKALLFLCSGSFIHSLNGEQDIRKMGGMLYLMPITSSCFTLSILSLMGVPFMTGFFSKDTILEAMSASYVNIWAITLTLMATSFTAVYSLRLIFFVLMGRPRTKPVSTMNEHDPYAIKPLVRLAVASIITGCLLVHYMVPPKMPVITMPPILKLAALIVSLIGFVIALGLAFMANKQLKPKPPSGPHHFSNMLGFFPTIIHRFIPKIILTMAQKIASKMIDQTWLKKTGPKAASNINKPLATTTSNVQRGMIKPYITLFLLTLTIAGILVYFTIF
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11989..13839
location: region:11989-13839:1
so has part: feature:11989-13839:1:exon

YP_009123857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11989-13839:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: ND6
so part of: sequence
location: complement(13836..14357)
location: region:13836-14357:-1
so has part: feature:13836-14357:-1:exon
subclass of: SO_0000010

23631941
type: Gene
SIO_000068: ncbigene

position:13836:-1
position: 13836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14357:-1
position: 14357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13836-14357:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYIMLLLLMGMIMGLVFVASNPSPYFGALGLVAVASVGCGILVNYGGSFLSLVLFLIYLGGMLVVFAYSAALAADPFPEGLGNWFVKLLVVVYMMGITSFSFLFSGKWHEFSWVPVDEISEFSVFRGDVGGVALMYSFGGIFLIIGAWVLLLALFVVLELTRGFNSGAFRAI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13836..14357)
location: region:13836-14357:-1
so has part: feature:13836-14357:-1:exon

YP_009123858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13836-14357:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Glu
so part of: sequence
location: complement(14358..14429)
location: region:14358-14429:-1
so has part: feature:14358-14429:-1:region

position:14358:-1
position: 14358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14429:-1
position: 14429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14358-14429:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 158456
gene: CYTB
so part of: sequence
location: 14491..15637
location: region:14491-15637:1
so has part: feature:14491-15637:1:exon
subclass of: SO_0000010

23631942
type: Gene
SIO_000068: ncbigene

position:14491:1
position: 14491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15637:1
position: 15637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14491-15637:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 158456
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15637,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTHQRKNHPLLKIANNALIDLPAPASISAWWNFGSLLGLCLIIQILTGLFLAMHYTSDITMAFSSITHICRDVNYGWFIRNMHANGASFFFICIYLHIGRGLYYGSYTNKEVWNVGVLLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALTMIHLLFLHETGSNNPMGLNSNVDKVTFHPYFSYKDLLGFTILLITLLSLSLFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPILHTSKQRSLTFRPLSQFLFWILIADVMILTWIGGMPVENPYIIIGQMASFLYFSLFLVLMPMAGLLEDEIVFKHIT
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14491..15637
location: region:14491-15637:1
so has part: feature:14491-15637:1:exon

YP_009123859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14491-15637:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Thr
so part of: sequence
location: 15638..15710
location: region:15638-15710:1
so has part: feature:15638-15710:1:region

position:15638:1
position: 15638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15710:1
position: 15710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15638-15710:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 158456
product: tRNA-Pro
so part of: sequence
location: complement(15713..15782)
location: region:15713-15782:-1
so has part: feature:15713-15782:-1:region

position:15713:-1
position: 15713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15782:-1
position: 15782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15713-15782:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 158456
note: putative D-loop/control region
so part of: sequence
location: 15783..16980
location: region:15783-16980:1
so has part: feature:15783-16980:1:region

position:15783:1
position: 15783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15783-16980:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 158456
note: thermo-stable hairpin
so part of: sequence
location: 16042..16066
location: region:16042-16066:1
so has part: feature:16042-16066:1:region

position:16042:1
position: 16042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16066:1
position: 16066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16042-16066:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 158456
note: CSB-D
so part of: sequence
location: 16379..16400
location: region:16379-16400:1
so has part: feature:16379-16400:1:region

position:16379:1
position: 16379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16400:1
position: 16400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16379-16400:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 158456
note: CSB-I
so part of: sequence
location: 16644..16666
location: region:16644-16666:1
so has part: feature:16644-16666:1:region

position:16644:1
position: 16644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16666:1
position: 16666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16644-16666:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 158456
note: CSB-II
so part of: sequence
location: 16739..16756
location: region:16739-16756:1
so has part: feature:16739-16756:1:region

position:16739:1
position: 16739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16756:1
position: 16756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16739-16756:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 158456
note: CSB-III
so part of: sequence
location: 16793..16810
location: region:16793-16810:1
so has part: feature:16793-16810:1:region

position:16793:1
position: 16793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16810:1
position: 16810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16793-16810:1:region