Weissella confusa strain VTT E-133279 plasmid pWconfE3279-1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Weissella.
Genome sequencing of Weissella confusa isolates
Submitted (06-MAR-2018) Department of Pathology and Laboratory Medicine, University of Saskatchewan, Svinhufvudintie 9 C 44, Helsinki 00570, Finland
REFSEQ INFORMATION: The reference sequence is identical to\nCP027564.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 3.9.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 15x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:47:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,101\nCDSs (total) :: 1,985\nGenes (coding) :: 1,974\nCDSs (with protein) :: 1,974\nGenes (RNA) :: 116\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 85\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 3 of 11\nPseudo Genes (incomplete) :: 3 of 11\nPseudo Genes (internal stop) :: 5 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010001715.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:NF033218.1
alkaline shock response membrane anchor protein AmaP
COORDINATES: similar to AA sequence:RefSeq:WP_010370260.1
Asp23/Gls24 family envelope stress response protein
COORDINATES: similar to AA sequence:RefSeq:WP_004905998.1