Phaeobacter piscinae strain S26 plasmid pS26_68, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
The broad-spectrum antibiotic tropodithietic acid influences cell morphology in the native producer
Submitted (30-JUN-2021) DTU Bioengineering, Technical University of Denmark, Soltofts Plads 221, Kgs. Lyngby 2800, Denmark
Submitted (03-NOV-2014) Department of Systems Biology, Technical University of Denmark, Matematiktorvet, Building 301, Lyngby 2800, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP080279.1.\nBacteria and source DNA available from Lone Gram, Technical\nUniversity of Denmark.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-JAN-2021\nAssembly Method :: Unicycler v. v0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 473.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/29/2022 01:19:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,048\nCDSs (total) :: 3,975\nGenes (coding) :: 3,951\nCDSs (with protein) :: 3,951\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 7 of 24\nPseudo Genes (incomplete) :: 20 of 24\nPseudo Genes (internal stop) :: 8 of 24\nPseudo Genes (multiple problems) :: 7 of 24\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014876600.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889387.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876602.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018303041.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536660.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889392.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175289.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_019294856.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889395.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889396.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010967405.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014889397.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_014889398.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876615.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294850.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876617.1
GO:0005615 - extracellular space [Evidence IEA]
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876618.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889403.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876620.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]; GO:0008905 - mannose-phosphate guanylyltransferase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_014889405.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807635.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889407.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014889408.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889410.1
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:NF012573.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001142368.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889412.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889413.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889414.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876629.1
COORDINATES: similar to AA sequence:RefSeq:WP_014994105.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876631.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876632.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876633.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876634.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889419.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889420.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876637.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876638.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876592.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889380.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889382.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876597.1
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014889385.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014876599.1