Phaeobacter piscinae strain S26 plasmid pS26_106.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
The broad-spectrum antibiotic tropodithietic acid influences cell morphology in the native producer
Submitted (30-JUN-2021) DTU Bioengineering, Technical University of Denmark, Soltofts Plads 221, Kgs. Lyngby 2800, Denmark
Submitted (03-NOV-2014) Department of Systems Biology, Technical University of Denmark, Matematiktorvet, Building 301, Lyngby 2800, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP080277.1.\nBacteria and source DNA available from Lone Gram, Technical\nUniversity of Denmark.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-JAN-2021\nAssembly Method :: Unicycler v. v0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 473.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/29/2022 01:19:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,048\nCDSs (total) :: 3,975\nGenes (coding) :: 3,951\nCDSs (with protein) :: 3,951\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 7 of 24\nPseudo Genes (incomplete) :: 20 of 24\nPseudo Genes (internal stop) :: 8 of 24\nPseudo Genes (multiple problems) :: 7 of 24\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009466316.1
GO:0003824 - catalytic activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF025555.2
COORDINATES: similar to AA sequence:RefSeq:WP_011655428.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187348.1
COORDINATES: protein motif:HMM:NF023164.2
COORDINATES: similar to AA sequence:RefSeq:WP_007818460.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633565.1
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019421.2
type II toxin-antitoxin system HipA family toxin
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_008282218.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_012559875.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537746.1
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF017319.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_011046249.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005850195.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825445.1
COORDINATES: similar to AA sequence:RefSeq:WP_003103909.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442376.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009827007.1
COORDINATES: protein motif:HMM:NF022763.2
type VI secretion system-associated protein TagO
COORDINATES: protein motif:HMM:NF024108.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:TIGR04346.1
COORDINATES: protein motif:HMM:NF025241.2
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF028242.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF017736.2
COORDINATES: protein motif:HMM:NF022835.2
DotI/IcmL family type IV secretion protein
COORDINATES: protein motif:HMM:NF023713.2
DotH/IcmK family type IV secretion protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_008193587.1
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF027994.2
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_008231078.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_010140456.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: protein motif:HMM:NF022172.2
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF025577.2
COORDINATES: similar to AA sequence:RefSeq:WP_011446336.1
COORDINATES: similar to AA sequence:RefSeq:WP_017928675.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011386061.1