Levilactobacillus brevis strain LMT1-73 plasmid p2, complete sequence.
type: Entry
definition: Levilactobacillus brevis strain LMT1-73 plasmid p2, complete sequence.
sequence version: NZ_CP033887.1
sequence date: 2023-04-07
sequence: sequence
division: CON
label: NZ_CP033887.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10417161
keyword: RefSeq
source: Levilactobacillus brevis
organism: Levilactobacillus brevis
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Levilactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP033887.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. August-2018\nAssembly Name :: LMT1-73\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 383.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 00:02:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,479\nCDSs (total) :: 2,395\nGenes (coding) :: 2,384\nCDSs (with protein) :: 2,384\nGenes (RNA) :: 84\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 2 of 11\nPseudo Genes (incomplete) :: 6 of 11\nPseudo Genes (internal stop) :: 4 of 11\nPseudo Genes (multiple problems) :: 1 of 11\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10582
topology: linear
so has quality: SO_0000987
location: 1..10582
location: region:1-10582:1
RO_0002162: 1580

NZ_CP033887
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10417161
type: BioSample
SIO_000068: biosample

1
title: Lactobacillus brevis
author: Kim, Y.
journal: Unpublished

2
title: Direct Submission
author: Kim, Y.
journal: Submitted (14-NOV-2018) R&D Center, Medytox, Central Town-Ro 114, Suwon-Si, Gyeonggi-Do 16506, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10582:1
position: 10582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10582:1:source
so part of: sequence
organism: Levilactobacillus brevis
mol type: genomic DNA
strain: LMT1-73
isolation source: kimchi
plasmid: p2
country: South Korea
collection date: 2015

1580
type: Taxonomy
SIO_000068: taxonomy

EGU21_RS12255
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12255
so part of: sequence
location: complement(<1..123)
location: region:1-123:-1
so has part: feature:1-123:-1:exon
subclass of: SO_0000010

39660399
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:123:-1
position: 123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-123:-1:exon

EGU21_RS12255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844823.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin domain-containing protein
translation: MEQLSVMNKKEFDKKLKNGKYILVFIASWCPDCSFIKPHLP
SIO_010081: EGU21_RS12255
subclass of: SO_0000673
so part of: EGU21_RS12255
location: complement(<1..123)
location: region:1-123:-1
so has part: feature:1-123:-1:exon

WP_263853826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-123:-1:exon

EGU21_RS12260
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
gene: trxA
locus tag: EGU21_RS12260
pseudo: true
so part of: sequence
location: complement(98..458)
location: region:98-458:-1
so has part: feature:98-458:-1:exon
subclass of: SO_0000010

39660398
type: Gene
SIO_000068: ncbigene

position:98:-1
position: 98
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:458:-1
position: 458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98-458:-1:exon

EGU21_RS12260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
gene: trxA
locus tag: EGU21_RS12260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005606751.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: thioredoxin
SIO_010081: EGU21_RS12260
subclass of: SO_0000673
so part of: EGU21_RS12260
location: complement(98..458)
location: region:98-458:-1
so has part: feature:98-458:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98-458:-1:exon

EGU21_RS12265
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12265
so part of: sequence
location: complement(472..753)
location: region:472-753:-1
so has part: feature:472-753:-1:exon
subclass of: SO_0000010

39660397
type: Gene
SIO_000068: ncbigene

position:472:-1
position: 472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:753:-1
position: 753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472-753:-1:exon

EGU21_RS12265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12265
inference: COORDINATES: protein motif:HMM:NF012314.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin family protein
translation: MSTIDKTLTLINFENNWCAQCYTQRPIINKISHDFNSYLNVRVVNSDAHPELAKKYNVYSAPSTILLRDGKIVEKITRFIDQSQLTTLIKYYL
SIO_010081: EGU21_RS12265
subclass of: SO_0000673
so part of: EGU21_RS12265
location: complement(472..753)
location: region:472-753:-1
so has part: feature:472-753:-1:exon

WP_008855846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:472-753:-1:exon

EGU21_RS12270
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12270
so part of: sequence
location: complement(879..1523)
location: region:879-1523:-1
so has part: feature:879-1523:-1:exon
subclass of: SO_0000010

39660396
type: Gene
SIO_000068: ncbigene

position:879:-1
position: 879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1523:-1
position: 1523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:879-1523:-1:exon

EGU21_RS12270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335296.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MFEQAVNYKNGLYEELSKIGKGLSSDRRLEILDLLTQAPKSVETIANGVGISVANASRHLQILKDSHLVKTKRKGNHIIYSLSSPKISDLVHLLTDIGNSELSDMKTIQDKSDAQDNVKTISLKQAQEEYKNCFVLDVRPSDEYAAGHIQSAINVPLETLKESMPKLPKDQKIIVYCRGRLCANSNIATQILNRNGFDAVSLNSSYYYWNKITG
SIO_010081: EGU21_RS12270
subclass of: SO_0000673
so part of: EGU21_RS12270
location: complement(879..1523)
location: region:879-1523:-1
so has part: feature:879-1523:-1:exon

WP_123831022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:879-1523:-1:exon

EGU21_RS12280
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12280
so part of: sequence
location: 2132..2599
location: region:2132-2599:1
so has part: feature:2132-2599:1:exon
subclass of: SO_0000010

39660394
type: Gene
SIO_000068: ncbigene

position:2132:1
position: 2132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2599:1
position: 2599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2132-2599:1:exon

EGU21_RS12280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003639769.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
translation: MKYTKTKAVLNQLVADLSQMSMIIHQTHWYMRGPNFLKLHPLMDEFMEEIDSQLDVISERLIALDGSPYSTLKEMAENTKIQDWPGEWDKTIPERLAHLVDGYRYLEDLYQHGIEVSDVEKDFSTQDIFIGLKTAIEKKIWMIQAELGSAPEIDE
SIO_010081: EGU21_RS12280
subclass of: SO_0000673
so part of: EGU21_RS12280
location: 2132..2599
location: region:2132-2599:1
so has part: feature:2132-2599:1:exon

WP_096110631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2132-2599:1:exon

EGU21_RS12285
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12285
pseudo: true
so part of: sequence
location: complement(<2641..2730)
location: region:2641-2730:-1
so has part: feature:2641-2730:-1:exon
subclass of: SO_0000010

39660393
type: Gene
SIO_000068: ncbigene

position:2641:-1
position: 2641
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:2730:-1
position: 2730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2641-2730:-1:exon

EGU21_RS12285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: EGU21_RS12285
subclass of: SO_0000673
so part of: EGU21_RS12285
location: complement(<2641..2730)
location: region:2641-2730:-1
so has part: feature:2641-2730:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2641-2730:-1:exon

EGU21_RS12295
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12295
so part of: sequence
location: complement(2930..3448)
location: region:2930-3448:-1
so has part: feature:2930-3448:-1:exon
subclass of: SO_0000010

39660391
type: Gene
SIO_000068: ncbigene

position:2930:-1
position: 2930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3448:-1
position: 3448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2930-3448:-1:exon

EGU21_RS12295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007745771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HTH domain-containing protein
translation: MPKTIRELADELGVSKQAIWQKIKRDASIDLRQFTSTKGNTVYVDVDGQKAIKAMFSNDSSTRYRQQKDDVDDNKKDAVDGQDEVKFLRNLVSEFQSEKKELHKLLDQQQRLALQDKQLLEEYKAEIKDLKALTMAPHDNSEKEVTSDKQPEPENSTPESQPKPKKWWRFGK
SIO_010081: EGU21_RS12295
subclass of: SO_0000673
so part of: EGU21_RS12295
location: complement(2930..3448)
location: region:2930-3448:-1
so has part: feature:2930-3448:-1:exon

WP_001748066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2930-3448:-1:exon

EGU21_RS12300
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12300
so part of: sequence
location: complement(3441..4376)
location: region:3441-4376:-1
so has part: feature:3441-4376:-1:exon
subclass of: SO_0000010

39660390
type: Gene
SIO_000068: ncbigene

position:3441:-1
position: 3441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4376:-1
position: 4376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3441-4376:-1:exon

EGU21_RS12300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNELVKYDPELNTIPLRKFTPIEMNLFFSIVSRMRDQGNKTVRFSFDQLKELSNYKPTANKRFIDDIENTYQKILSLRFGRRSKSGLNREFFVMFTEFEIKGEAEEPYVDIQIYPKALHLLNDLESWVRYALTEFRNLKSSYAKTMFRLIKQFRTTGYSYFSKEDFFELLDIPKSYWNSPSNVDKKVIKPIREELTPLFRGLTIRKKYGKGRGKPVIGYSFTWKPERKDANDFSQGKFQDERQKLFNIQHNDELSDKEKWRAIDKVKCLPLGTTEKQVLAEKQAEHDQKIRDQARREALAELRKGFGNNA
SIO_010081: EGU21_RS12300
subclass of: SO_0000673
so part of: EGU21_RS12300
location: complement(3441..4376)
location: region:3441-4376:-1
so has part: feature:3441-4376:-1:exon

WP_016511576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3441-4376:-1:exon

EGU21_RS12310
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12310
so part of: sequence
location: complement(5662..6249)
location: region:5662-6249:-1
so has part: feature:5662-6249:-1:exon
subclass of: SO_0000010

39660388
type: Gene
SIO_000068: ncbigene

position:5662:-1
position: 5662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6249:-1
position: 6249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5662-6249:-1:exon

EGU21_RS12310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEIQDTLLNNFIAGRRNYTIFQVGKATLLRVSDVMGLKQADIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHKLDSEWLFPSIQRPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTESMLDQIDFG
SIO_010081: EGU21_RS12310
subclass of: SO_0000673
so part of: EGU21_RS12310
location: complement(5662..6249)
location: region:5662-6249:-1
so has part: feature:5662-6249:-1:exon

WP_060416949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5662-6249:-1:exon

EGU21_RS12315
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12315
so part of: sequence
location: 6327..6590
location: region:6327-6590:1
so has part: feature:6327-6590:1:exon
subclass of: SO_0000010

39660387
type: Gene
SIO_000068: ncbigene

position:6327:1
position: 6327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6590:1
position: 6590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6327-6590:1:exon

EGU21_RS12315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017260787.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]
GO process: GO:0001558 - regulation of cell growth [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PrlF family antitoxin
translation: MSAGNVTKVSSKITSKNQITIPKTVRELLKVRSTDTIEWQIEPNGKVMIVRSKPDLWQLVDEQEKKFGNLSTTEVDWGKDVESEDFD
SIO_010081: EGU21_RS12315
subclass of: SO_0000673
so part of: EGU21_RS12315
location: 6327..6590
location: region:6327-6590:1
so has part: feature:6327-6590:1:exon

WP_001748062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6327-6590:1:exon

EGU21_RS12320
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12320
so part of: sequence
location: 6590..6937
location: region:6590-6937:1
so has part: feature:6590-6937:1:exon
subclass of: SO_0000010

39660386
type: Gene
SIO_000068: ncbigene

position:6937:1
position: 6937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6590-6937:1:exon

EGU21_RS12320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12320
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003646106.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MKLKQGAILWINLDPAKGTETKKKRPCLVVSNDHYNRYFNTVLVVPISTSDKYRTQEKYAKSPLFIRIDNGKIHGTALLQHVRAVDPTKRSDGEVVATLSQQEISSISTKVQQFF
SIO_010081: EGU21_RS12320
subclass of: SO_0000673
so part of: EGU21_RS12320
location: 6590..6937
location: region:6590-6937:1
so has part: feature:6590-6937:1:exon

WP_024002471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6590-6937:1:exon

EGU21_RS12325
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12325
so part of: sequence
location: complement(7061..8392)
location: region:7061-8392:-1
so has part: feature:7061-8392:-1:exon
subclass of: SO_0000010

39660385
type: Gene
SIO_000068: ncbigene

position:7061:-1
position: 7061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8392:-1
position: 8392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7061-8392:-1:exon

EGU21_RS12325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12325
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MKFDYVVIGSGPSVYRFLLGMQNSGKKIAVVEKNRFGGICPNEGCEPKIFLEGAARATLTSMRLQGKGITQPAKLDWKELIQQKNKAMASFLNNMQSMYEGLGATTIKGEASFVDQHTIEVNNKKITADNFVIATGKKPHPLNIPGHEYLLTSTNLFELEDTPKNVAIIGSGYVGMEFATLLSAAGVKVTVIVRSGQPLEGFYSQHVHQLVDEMKNSLGINFIFNTNVTAVTEAQTGYEVQSANGNLGTFDKVINASGRVPEINALKLDNAGVEYSNRGIKVDKYLTTSANNIYAMGDIVDKTAPALTSTAQFEADYLSALLTNKTTEPLRYPVIGTVTFTFPQLAQAGISIDKAKEDSNYSIKDIDITQGDFLYAGTDDHARLSLVFDKQNHLVGAAEISQTAVDDINALIPVMAIDVDPEVWKEKMLMAFPGLAYKIRTLI
SIO_010081: EGU21_RS12325
subclass of: SO_0000673
so part of: EGU21_RS12325
location: complement(7061..8392)
location: region:7061-8392:-1
so has part: feature:7061-8392:-1:exon

WP_050340448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7061-8392:-1:exon

EGU21_RS12565
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12565
so part of: sequence
location: complement(8410..8541)
location: region:8410-8541:-1
so has part: feature:8410-8541:-1:exon
subclass of: SO_0000010

79851239
type: Gene
SIO_000068: ncbigene

position:8410:-1
position: 8410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8541:-1
position: 8541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8410-8541:-1:exon

EGU21_RS12565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004909440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEDKPQFNTIFGDNNDAAVCGPDGCNIAEHQKQTEDKKKKTK
SIO_010081: EGU21_RS12565
subclass of: SO_0000673
so part of: EGU21_RS12565
location: complement(8410..8541)
location: region:8410-8541:-1
so has part: feature:8410-8541:-1:exon

WP_015474697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8410-8541:-1:exon

EGU21_RS12330
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12330
so part of: sequence
location: complement(8554..9201)
location: region:8554-9201:-1
so has part: feature:8554-9201:-1:exon
subclass of: SO_0000010

39660384
type: Gene
SIO_000068: ncbigene

position:8554:-1
position: 8554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9201:-1
position: 9201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8554-9201:-1:exon

EGU21_RS12330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844821.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsbA family oxidoreductase
translation: MEIKYWSDIACPFCYIGSNRMKRAMKEIGIYDTTELEFKSFELNPATPKETDEGYINHFTQGNKAMEPQAKKQMAYIEQMAHNDGLPMDLDSVVPTNTMDAHRIIKFAEAKNDPDLTERVIRRFYQVYFSDGQSISDHDVLLNAAMEAGLAKDEVEKVLNSNQYHQAVVNDEAEAQQSGIHAAPFFVINNKYAISGAQPYEVFVKALKRVQEEEN
SIO_010081: EGU21_RS12330
subclass of: SO_0000673
so part of: EGU21_RS12330
location: complement(8554..9201)
location: region:8554-9201:-1
so has part: feature:8554-9201:-1:exon

WP_006844821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8554-9201:-1:exon

EGU21_RS12335
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
gene: trxB
locus tag: EGU21_RS12335
so part of: sequence
location: complement(9220..10164)
location: region:9220-10164:-1
so has part: feature:9220-10164:-1:exon
subclass of: SO_0000010

39660383
type: Gene
SIO_000068: ncbigene

position:9220:-1
position: 9220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10164:-1
position: 10164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9220-10164:-1:exon

EGU21_RS12335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
gene: trxB
locus tag: EGU21_RS12335
EC number: 1.8.1.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844822.1
GO function: GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin-disulfide reductase
translation: MRKYDVVVIGAGPGGMTAALYAARANLNVAMLDRGIYGGQMNNTDDIENYPGFTTIKGPELGEKMYQGTVKAGVNFVYGDVQNVTVDDQQMKHIQTDSDELVASAVIIATGSNNRKLGVPGEEKFSGKGVSYCAVCDGSFFKGKNVTVVGGGDSAISEGLYLANVTDGVNVIHRRDQLRAQKVLQNRAFDNDKIDFTWNTSVTEILGDENHVTGVKIHNNQVGDDTTLDTDGVFVYVGNFPNSQIFNNLNITDQAGWIITNDQMETTIPGIYAIGDVRQKQLRQITTAVGDGGIAGQNAFEYFEAIKHRQTVKD
SIO_010081: EGU21_RS12335
subclass of: SO_0000673
so part of: EGU21_RS12335
location: complement(9220..10164)
location: region:9220-10164:-1
so has part: feature:9220-10164:-1:exon

WP_006844822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9220-10164:-1:exon

EGU21_RS12340
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12340
pseudo: true
so part of: sequence
location: complement(<10255..10383)
location: region:10255-10383:-1
so has part: feature:10255-10383:-1:exon
subclass of: SO_0000010

39660382
type: Gene
SIO_000068: ncbigene

position:10255:-1
position: 10255
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10383:-1
position: 10383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10255-10383:-1:exon

EGU21_RS12340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005235674.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: aspartate racemase
SIO_010081: EGU21_RS12340
subclass of: SO_0000673
so part of: EGU21_RS12340
location: complement(<10255..10383)
location: region:10255-10383:-1
so has part: feature:10255-10383:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10255-10383:-1:exon

EGU21_RS12345
type: Gene
subclass of: SO_0000704
RO_0002162: 1580
locus tag: EGU21_RS12345
so part of: sequence
location: complement(10383..>10582)
location: region:10383-10582:-1
so has part: feature:10383-10582:-1:exon
subclass of: SO_0000010

39660381
type: Gene
SIO_000068: ncbigene

position:10582:-1
position: 10582
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10383-10582:-1:exon

EGU21_RS12345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1580
locus tag: EGU21_RS12345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844823.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 3
transl table: 11
product: thioredoxin family protein
translation: IEQEFKDYTFISVDRDENTELAQELNIFGIPSFVIFRDGQEIGRLVNKDRKTKEEVENFITNTIN
SIO_010081: EGU21_RS12345
subclass of: SO_0000673
so part of: EGU21_RS12345
location: complement(10383..>10582)
location: region:10383-10582:-1
so has part: feature:10383-10582:-1:exon

WP_164475136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10383-10582:-1:exon