Levilactobacillus brevis strain LMT1-73 plasmid p1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Levilactobacillus.
Submitted (14-NOV-2018) R&D Center, Medytox, Central Town-Ro 114, Suwon-Si, Gyeonggi-Do 16506, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP033886.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. August-2018\nAssembly Name :: LMT1-73\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 383.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 00:02:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,479\nCDSs (total) :: 2,395\nGenes (coding) :: 2,384\nCDSs (with protein) :: 2,384\nGenes (RNA) :: 84\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 2 of 11\nPseudo Genes (incomplete) :: 6 of 11\nPseudo Genes (internal stop) :: 4 of 11\nPseudo Genes (multiple problems) :: 1 of 11\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
KxYKxGKxW signal peptide domain-containing protein
COORDINATES: protein motif:HMM:NF013231.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002345766.1
magnesium transporter CorA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011373852.1
IS30-like element ISLsa1 family transposase
COORDINATES: protein motif:HMM:NF028245.2
COORDINATES: similar to AA sequence:RefSeq:WP_016526665.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
ClC family H(+)/Cl(-) exchange transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013356282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011674077.1
ISLre2-like element ISLca4 family transposase
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_010623287.1
COORDINATES: similar to AA sequence:RefSeq:WP_004466180.1
COORDINATES: similar to AA sequence:RefSeq:WP_015474644.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005470367.1
ATP-dependent Clp protease ATP-binding subunit
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS30-like element ISLpl1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011668997.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002825823.1
COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF033551.1