Falsihalocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Falsihalocynthiibacter.
Complete genome sequence of Halocynthiibacter arcticus PAMC 20958t from arctic marine sediment
Submitted (12-FEB-2016) Division of Polar Life Sciences, Korea Polar Research Institute, 26 Songdomirae-Ro, Yeonsu-Gu, Incheon 406-840, Korea, Republic of
Submitted (08-DEC-2014) Kopri, Korea Polar Research Institute, 26 Songdomirae-Ro, Yeonsu-Gu, Incheon 406-840, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP014328.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PBcR and Celera Assembler v. 8.3\nGenome Coverage :: 23.42x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 21:22:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,295\nCDSs (total) :: 4,236\nGenes (coding) :: 3,972\nCDSs (with protein) :: 3,972\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 264\nCDSs (without protein) :: 264\nPseudo Genes (ambiguous residues) :: 0 of 264\nPseudo Genes (frameshifted) :: 199 of 264\nPseudo Genes (incomplete) :: 73 of 264\nPseudo Genes (internal stop) :: 33 of 264\nPseudo Genes (multiple problems) :: 34 of 264\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Halocynthiibacter arcticus
COORDINATES: similar to AA sequence:RefSeq:WP_076611592.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009827392.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009827393.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230621.1
COORDINATES: similar to AA sequence:RefSeq:WP_008835448.1
GO:0008800 - beta-lactamase activity [Evidence IEA]; GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024809.2
glutathione S-transferase family protein
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_009806364.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008225531.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_017173568.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
PaeR7I family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_008759053.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_015495618.1
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_009618210.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018578474.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_011872576.1