Leptotrichia shahii strain JCM16776 plasmid JCM16776p1, complete sequence.
Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia.
Complete Genome Sequence of Leptotrichia shahii Strain JCM 16776
Submitted (23-JUL-2019) Contact:Shinya Watanabe Jichi Medical University, Bacteriology; Yakushiji 3311-1, Shimotsuke, Tochigi 329-0498, Japan URL :http://www.jichi.ac.jp/bacteriology/
REFSEQ INFORMATION: The reference sequence is identical to\nAP019828.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8; Circlator v. 1.5.5;\n nanopolish v. 0.10.2; Pilon v. 1.22; CLC\n Genomics Workbench v. 9.5.3\nGenome Coverage :: 67x\nSequencing Technology :: MinION; MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:38:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,037\nCDSs (total) :: 1,973\nGenes (coding) :: 1,961\nCDSs (with protein) :: 1,961\nGenes (RNA) :: 64\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 6 of 12\nPseudo Genes (incomplete) :: 7 of 12\nPseudo Genes (internal stop) :: 0 of 12\nPseudo Genes (multiple problems) :: 1 of 12\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
strain coidentity: JCM16776 = CCUG 47503 = LB 37 = CIP 107916 = DSM 19757
COORDINATES: similar to AA sequence:RefSeq:WP_012806179.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006806162.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018499565.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016398131.1
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_004113436.1
COORDINATES: similar to AA sequence:RefSeq:WP_018450737.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018498924.1
COORDINATES: similar to AA sequence:RefSeq:WP_018498933.1
COORDINATES: similar to AA sequence:RefSeq:WP_018498934.1
COORDINATES: similar to AA sequence:RefSeq:WP_006627213.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018450744.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806214.1
COORDINATES: similar to AA sequence:RefSeq:WP_005957372.1
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018498938.1
COORDINATES: similar to AA sequence:RefSeq:WP_006806160.1
COORDINATES: similar to AA sequence:RefSeq:WP_011528990.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_005971533.1
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]