Leptotrichia shahii strain JCM16776 plasmid JCM16776p1, complete sequence.
type: Entry
definition: Leptotrichia shahii strain JCM16776 plasmid JCM16776p1, complete sequence.
sequence version: NZ_AP019828.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP019828.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00174168
keyword: RefSeq
source: Leptotrichia shahii
organism: Leptotrichia shahii
taxonomy: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP019828.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8; Circlator v. 1.5.5;\n nanopolish v. 0.10.2; Pilon v. 1.22; CLC\n Genomics Workbench v. 9.5.3\nGenome Coverage :: 67x\nSequencing Technology :: MinION; MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:38:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,037\nCDSs (total) :: 1,973\nGenes (coding) :: 1,961\nCDSs (with protein) :: 1,961\nGenes (RNA) :: 64\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 6 of 12\nPseudo Genes (incomplete) :: 7 of 12\nPseudo Genes (internal stop) :: 0 of 12\nPseudo Genes (multiple problems) :: 1 of 12\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18220
topology: circular
so has quality: SO_0000988
location: 1..18220
location: region:1-18220:1
RO_0002162: 157691

NZ_AP019828
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00174168
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leptotrichia shahii Strain JCM 16776
author: Watanabe, S.
author: Cui, L.
journal: Unpublished

2
title: Direct Submission
author: Watanabe, S.
author: Cui, L.
journal: Submitted (23-JUL-2019) Contact:Shinya Watanabe Jichi Medical University, Bacteriology; Yakushiji 3311-1, Shimotsuke, Tochigi 329-0498, Japan URL :http://www.jichi.ac.jp/bacteriology/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18220:1
position: 18220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18220:1:source
so part of: sequence
organism: Leptotrichia shahii
mol type: genomic DNA
strain: JCM16776
isolation source: Gingivitis
type material: type strain of Leptotrichia shahii
plasmid: JCM16776p1
country: USA
note: strain coidentity: JCM16776 = CCUG 47503 = LB 37 = CIP 107916 = DSM 19757

157691
type: Taxonomy
SIO_000068: taxonomy

F1564_RS09955
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09955
old locus tag: JCM16776_p1001
pseudo: true
so part of: sequence
location: <2..970
location: region:2-970:1
so has part: feature:2-970:1:exon
subclass of: SO_0000010

position:2:1
position: 2
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:970:1
position: 970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-970:1:exon

F1564_RS09955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09955
old locus tag: JCM16776_p1001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012806179.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISLre2 family transposase
SIO_010081: F1564_RS09955
subclass of: SO_0000673
so part of: F1564_RS09955
location: <2..970
location: region:2-970:1
so has part: feature:2-970:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2-970:1:exon

F1564_RS09960
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09960
old locus tag: JCM16776_p1002
so part of: sequence
location: 1544..1759
location: region:1544-1759:1
so has part: feature:1544-1759:1:exon
subclass of: SO_0000010

position:1544:1
position: 1544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1759:1
position: 1759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1544-1759:1:exon

F1564_RS09960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09960
old locus tag: JCM16776_p1002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806162.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MASISLKVSDMEKKFLQSMAQFEGVTLSELIKSKVFDSLEDEYDAKIADLRLSEYESYLKNGGEVLKWEEL
SIO_010081: F1564_RS09960
subclass of: SO_0000673
so part of: F1564_RS09960
location: 1544..1759
location: region:1544-1759:1
so has part: feature:1544-1759:1:exon

WP_006806162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1544-1759:1:exon

F1564_RS09965
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09965
old locus tag: JCM16776_p1003
so part of: sequence
location: 1744..2016
location: region:1744-2016:1
so has part: feature:1744-2016:1:exon
subclass of: SO_0000010

position:1744:1
position: 1744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2016:1
position: 2016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1744-2016:1:exon

F1564_RS09965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09965
old locus tag: JCM16776_p1003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018499565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MGRTVKYKIIPTPHFVKNFSKLDEFVKKRIKIYLENIAEDPRSKGKMLKANRKGQWRYRIGDYRVIVNIQDENLVVLALEVGHRKNIYNS
SIO_010081: F1564_RS09965
subclass of: SO_0000673
so part of: F1564_RS09965
location: 1744..2016
location: region:1744-2016:1
so has part: feature:1744-2016:1:exon

WP_018450732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1744-2016:1:exon

F1564_RS09970
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09970
old locus tag: JCM16776_p1004
so part of: sequence
location: 2358..3251
location: region:2358-3251:1
so has part: feature:2358-3251:1:exon
subclass of: SO_0000010

position:2358:1
position: 2358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3251:1
position: 3251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2358-3251:1:exon

F1564_RS09970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09970
old locus tag: JCM16776_p1004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016398131.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MYITVKQAAEKWGISDRRVRILCFEGKIPGAYREGRAWKIPYDTTKPTDKRYKTTKSLILVLEKKLIDLKARRPLTEGELERLNEEFLTEYTYNSNAIEGNTLTLRETDMVLRGLTIDKKSLKEHLEVIGHKEAFEYVRKLVSENVEISEKVIKDIHYLVLADKKEDRGIYRRVPVRIMGAAHEPVQPYLIIPKMEELLEQYKNSKEDIVTKLARFHIEFEGIHPFIDGNGRTGRLLINLELMKEGYPPIDIKFTDRLKYYEAFDEYHTKHNVSAMSDLFSRYLNQRLDLYLSILDK
SIO_010081: F1564_RS09970
subclass of: SO_0000673
so part of: F1564_RS09970
location: 2358..3251
location: region:2358-3251:1
so has part: feature:2358-3251:1:exon

WP_018450733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2358-3251:1:exon

F1564_RS09975
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09975
old locus tag: JCM16776_p1005
so part of: sequence
location: complement(3667..3825)
location: region:3667-3825:-1
so has part: feature:3667-3825:-1:exon
subclass of: SO_0000010

position:3667:-1
position: 3667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3825:-1
position: 3825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3667-3825:-1:exon

F1564_RS09975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09975
old locus tag: JCM16776_p1005
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MNEIVKYRNELNKVALRNFKSKELDLFIAIISRMRDKEEEVTFSFDYLKNLI
SIO_010081: F1564_RS09975
subclass of: SO_0000673
so part of: F1564_RS09975
location: complement(3667..3825)
location: region:3667-3825:-1
so has part: feature:3667-3825:-1:exon

WP_018450735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3667-3825:-1:exon

F1564_RS09980
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09980
old locus tag: JCM16776_p1006
so part of: sequence
location: complement(4141..4404)
location: region:4141-4404:-1
so has part: feature:4141-4404:-1:exon
subclass of: SO_0000010

position:4141:-1
position: 4141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4404:-1
position: 4404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4141-4404:-1:exon

F1564_RS09980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09980
old locus tag: JCM16776_p1006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004113436.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MIKSWTDEAWEEFQYWAKNDKKVFKRILELIKDIDRNGYTGICKPEALKYDFSGYWSRRIDAGNRIVYKIEDGIIKIVQCGSHYGDK
SIO_010081: F1564_RS09980
subclass of: SO_0000673
so part of: F1564_RS09980
location: complement(4141..4404)
location: region:4141-4404:-1
so has part: feature:4141-4404:-1:exon

WP_026231257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4141-4404:-1:exon

F1564_RS09985
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09985
old locus tag: JCM16776_p1007
so part of: sequence
location: complement(4397..4651)
location: region:4397-4651:-1
so has part: feature:4397-4651:-1:exon
subclass of: SO_0000010

position:4397:-1
position: 4397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4651:-1
position: 4651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4397-4651:-1:exon

F1564_RS09985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09985
old locus tag: JCM16776_p1007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450737.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MEKVVVNFRIDKDTKKEMEKICEDIGISIGTAFNIFAKKFTRERRMPFELDSDPFYSPKNIERLKKSIEQMEKTGGTVHEVDYD
SIO_010081: F1564_RS09985
subclass of: SO_0000673
so part of: F1564_RS09985
location: complement(4397..4651)
location: region:4397-4651:-1
so has part: feature:4397-4651:-1:exon

WP_018450737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4397-4651:-1:exon

F1564_RS09990
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09990
old locus tag: JCM16776_p1008
so part of: sequence
location: 5184..6188
location: region:5184-6188:1
so has part: feature:5184-6188:1:exon
subclass of: SO_0000010

position:5184:1
position: 5184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6188:1
position: 6188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5184-6188:1:exon

F1564_RS09990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09990
old locus tag: JCM16776_p1008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498924.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MANEIVKFNNQFNNVALKGFTSQELNLLITIASKLKEKEGEKVTFDFFDLKKYIKLNKNETTKEFIKNVMNVNKKLLKINFTFYNQNKIIQFALFKSFVIDTDLQTLEVSVNDEFLFLLNELTSNFTRFELEEFVKFKSTYTKEFYRRMKQFRHTGVWKISIDDFNRLLGISESYKISDIDKRVFQPILSELGEKYNLKIIKKYSKKTGRGRSSVSGFEFHFKKENRRVVEQENLEEIKQAGFDIEKVREHKIKEKIQKEEKNRINKVSDFYLYRKVKMYDSFYEQYNYLEILAFNQKNDKLNVKIRNVDDGYVQDFTFDSFKNFENWFRKYAI
SIO_010081: F1564_RS09990
subclass of: SO_0000673
so part of: F1564_RS09990
location: 5184..6188
location: region:5184-6188:1
so has part: feature:5184-6188:1:exon

WP_018450738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5184-6188:1:exon

F1564_RS09995
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS09995
old locus tag: JCM16776_p1010
so part of: sequence
location: complement(6599..7495)
location: region:6599-7495:-1
so has part: feature:6599-7495:-1:exon
subclass of: SO_0000010

position:6599:-1
position: 6599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7495:-1
position: 7495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6599-7495:-1:exon

F1564_RS09995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS09995
old locus tag: JCM16776_p1010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4435 domain-containing protein
translation: MGLLDVMENESDCIESIFQSYISSKSKKDIFLFFEGKDDFKYYVSRVSSHIGDKEYGVFHCNCKMNVLTIQEMIANQTAIQDDKKNLYFIDRDYDDNEDIPDSIYITSSYSIENYYFTDSAIKRMLIGVVGFSEESEEDSLDFKIVFDHIVNKRNEIIEEIIYANAWYSLQIKKSKDCGKFPQMTPLKEYSVVKNLNQICDFERLVKDSIETTEWEMNNAIEVLKTNPVNEIRGKYFIQALTPIFRNIFQDAGKKNNRKLFSKKRKIHLNLSDIICELSAYADTPPGLISYIKERLSV
SIO_010081: F1564_RS09995
subclass of: SO_0000673
so part of: F1564_RS09995
location: complement(6599..7495)
location: region:6599-7495:-1
so has part: feature:6599-7495:-1:exon

WP_018450741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6599-7495:-1:exon

F1564_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10000
old locus tag: JCM16776_p1011
so part of: sequence
location: complement(7500..9035)
location: region:7500-9035:-1
so has part: feature:7500-9035:-1:exon
subclass of: SO_0000010

position:7500:-1
position: 7500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9035:-1
position: 9035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7500-9035:-1:exon

F1564_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10000
old locus tag: JCM16776_p1011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498934.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MRRYGSIDEIAKEYALTNEQLLDYLLSNDIDVISDLDKIDLNNENIMAILDKINRNKKVNNHNNLTSLKSIEIKGLFGKYNYLINFRDDISIWVSENGIGKTTILNIIVAILTGDQNILMDINFKKVIVNISGKSYQIDREQYFQVNSNDNRYSKRIEALLEELSMSVPRSYSIKLRNDFARKKYIDLEFIEELSYRFFNNDIDLIKDKKIMYILHELKELQYKDLSRTLYKIKEALKEDILFYPTYRRVEVGLDKVFLNRRDEYNRYELSPKYMGFGMNDVKNRISNVLNKMRKDANTAYIEMNANIISELLKKNVSYYLGKYNPIDLHKVDVIIKRIGEERIDNIDSLKSFLDKSSRGKTIPNIEFLSYYLQKLVKIYDAQKPLDSKLRKFSDVCTKYLSGKKIIYDETLLTMNIYDCNDEKIDFEDLSSGEKQVISIFSKVYLDIVTPCIFIIDEPEISLSVEWQKEFLKDIFNSEKIGLMIATTHSPFIFKNEYRKFVIELDKYKEV
SIO_010081: F1564_RS10000
subclass of: SO_0000673
so part of: F1564_RS10000
location: complement(7500..9035)
location: region:7500-9035:-1
so has part: feature:7500-9035:-1:exon

WP_018450742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7500-9035:-1:exon

F1564_RS10005
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10005
old locus tag: JCM16776_p1012
so part of: sequence
location: complement(9036..9227)
location: region:9036-9227:-1
so has part: feature:9036-9227:-1:exon
subclass of: SO_0000010

position:9036:-1
position: 9036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9227:-1
position: 9227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9036-9227:-1:exon

F1564_RS10005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10005
old locus tag: JCM16776_p1012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006627213.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MKKLIDLDMTNNELMEKAKVSKSTFYKMKNGQNVTTDVLLRICNASDYDMDEIVEINDIKEEK
SIO_010081: F1564_RS10005
subclass of: SO_0000673
so part of: F1564_RS10005
location: complement(9036..9227)
location: region:9036-9227:-1
so has part: feature:9036-9227:-1:exon

WP_026231258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9036-9227:-1:exon

F1564_RS10010
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10010
old locus tag: JCM16776_p1013
so part of: sequence
location: complement(9259..9582)
location: region:9259-9582:-1
so has part: feature:9259-9582:-1:exon
subclass of: SO_0000010

position:9259:-1
position: 9259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9582:-1
position: 9582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9259-9582:-1:exon

F1564_RS10010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10010
old locus tag: JCM16776_p1013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450744.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MEKKFYEVKFTESAEKDLKKLNKSNKAIAKLLKKWISENLIGTQNPKQRGKALTGNLKGLWRYRAGSYRIVVEIKNDILLILIIEISDRKATYKDKKRKTYKDGKIK
SIO_010081: F1564_RS10010
subclass of: SO_0000673
so part of: F1564_RS10010
location: complement(9259..9582)
location: region:9259-9582:-1
so has part: feature:9259-9582:-1:exon

WP_149201968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9259-9582:-1:exon

F1564_RS10015
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10015
old locus tag: JCM16776_p1014
so part of: sequence
location: complement(9582..9809)
location: region:9582-9809:-1
so has part: feature:9582-9809:-1:exon
subclass of: SO_0000010

position:9809:-1
position: 9809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9582-9809:-1:exon

F1564_RS10015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10015
old locus tag: JCM16776_p1014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012806214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MPTLSLRMEKEDLEFLKEYSNINNLNMSSFVRNLILDKIYDEITEEDEKRILKRWEKSKSEKTSDAEDVFKRLGL
SIO_010081: F1564_RS10015
subclass of: SO_0000673
so part of: F1564_RS10015
location: complement(9582..9809)
location: region:9582-9809:-1
so has part: feature:9582-9809:-1:exon

WP_018498936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9582-9809:-1:exon

F1564_RS10020
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10020
old locus tag: JCM16776_p1015
so part of: sequence
location: 10188..10835
location: region:10188-10835:1
so has part: feature:10188-10835:1:exon
subclass of: SO_0000010

position:10188:1
position: 10188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10835:1
position: 10835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10188-10835:1:exon

F1564_RS10020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10020
old locus tag: JCM16776_p1015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005957372.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRYGYARVSTREQDEARQIKALKNKGVQEIIIEKASGKNFIDRQEWQKLMAKVVVDDVIVVKSLDRLGRNNAEIKETFELLSKKQVYLEFIDNDILNTRKPITETDKLNQKLVQPIILHLLGYFAERERELIKERQTEAYAQLEVDSKGRKLSNKKINKDGSKKICGRPNKVENLTKKQKDIINRWILKAIKTSEAVQLTGLSRSTLFRIKKNVL
SIO_010081: F1564_RS10020
subclass of: SO_0000673
so part of: F1564_RS10020
location: 10188..10835
location: region:10188-10835:1
so has part: feature:10188-10835:1:exon

WP_018450730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10188-10835:1:exon

F1564_RS10025
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10025
old locus tag: JCM16776_p1016
so part of: sequence
location: 11017..11466
location: region:11017-11466:1
so has part: feature:11017-11466:1:exon
subclass of: SO_0000010

position:11017:1
position: 11017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11466:1
position: 11466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11017-11466:1:exon

F1564_RS10025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10025
old locus tag: JCM16776_p1016
inference: COORDINATES: protein motif:HMM:NF014505.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MNARDFELLLKYFINLIKNNLRILKNPAIETTANARRSYVYSVDFGFTTGGVLRDRHYCVVLYSQGKTAIVVPLTSKNNTNIFNVELGIIQNLSRRNIVSYALVNQITTVSRAMLMQPRRNRNERVKLNSEQMNKLEQGLEKILFKNRY
SIO_010081: F1564_RS10025
subclass of: SO_0000673
so part of: F1564_RS10025
location: 11017..11466
location: region:11017-11466:1
so has part: feature:11017-11466:1:exon

WP_018450729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11017-11466:1:exon

F1564_RS10030
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10030
old locus tag: JCM16776_p1017
so part of: sequence
location: 11669..11839
location: region:11669-11839:1
so has part: feature:11669-11839:1:exon
subclass of: SO_0000010

position:11669:1
position: 11669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11839:1
position: 11839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11669-11839:1:exon

F1564_RS10030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10030
old locus tag: JCM16776_p1017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498938.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDEFFEDENVDNEESNLEYDRDVFDIEIEFDDKVIKRIERTETAREFEKLIESEE
SIO_010081: F1564_RS10030
subclass of: SO_0000673
so part of: F1564_RS10030
location: 11669..11839
location: region:11669-11839:1
so has part: feature:11669-11839:1:exon

WP_018450728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11669-11839:1:exon

F1564_RS10035
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10035
old locus tag: JCM16776_p1018
so part of: sequence
location: 13054..13269
location: region:13054-13269:1
so has part: feature:13054-13269:1:exon
subclass of: SO_0000010

position:13054:1
position: 13054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13269:1
position: 13269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13054-13269:1:exon

F1564_RS10035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10035
old locus tag: JCM16776_p1018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806162.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MASISLKVSDMEKKFLQSMAQFEGVTLSELIKSKVFDSLEDEYDAKIADLRLSEYESYLKNGGEVLKWEEV
SIO_010081: F1564_RS10035
subclass of: SO_0000673
so part of: F1564_RS10035
location: 13054..13269
location: region:13054-13269:1
so has part: feature:13054-13269:1:exon

WP_149201970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13054-13269:1:exon

F1564_RS10040
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10040
old locus tag: JCM16776_p1019
so part of: sequence
location: 13254..13526
location: region:13254-13526:1
so has part: feature:13254-13526:1:exon
subclass of: SO_0000010

position:13254:1
position: 13254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13526:1
position: 13526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13254-13526:1:exon

F1564_RS10040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10040
old locus tag: JCM16776_p1019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018499565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MGRSVKYKIIPTPHFVKDFNKLDEFVKKRIKIYLENIAEDPRSKGKMLKANRKGQWRYRIGDYRVIVNIQDENLVILALEVGHRKNICNS
SIO_010081: F1564_RS10040
subclass of: SO_0000673
so part of: F1564_RS10040
location: 13254..13526
location: region:13254-13526:1
so has part: feature:13254-13526:1:exon

WP_149201971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13254-13526:1:exon

F1564_RS10045
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10045
old locus tag: JCM16776_p1020
so part of: sequence
location: complement(13660..14586)
location: region:13660-14586:-1
so has part: feature:13660-14586:-1:exon
subclass of: SO_0000010

position:13660:-1
position: 13660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14586:-1
position: 14586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13660-14586:-1:exon

F1564_RS10045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10045
old locus tag: JCM16776_p1020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806160.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNEVVKYNNNFNNISLRNFNANELDILMAICSRMKEKGEEEITFHFDKLKKLVNYSDNTSATFIKDLESTYDKLISIKLKVGDERRFIKFVLFTRYSVDVDEKTVEIAVNKEFAWVLNELNVTFTAFELKEFISLKSSYAKEFYRRMKQFKSTGKWNISLEDFKRIMDVPVNYRMCDIDVWVLKPIQKELGDKFKLKIKKIYSKKSRGRPSVSGFEFTFSKEKYQAEETSKTKNRKEVKTPSDFFIHRKIRMMDGVTGMFNTLTIKSINEQKNGMVVVKIQNVDDFYEQEFAFNSMEHFENWFRKYVI
SIO_010081: F1564_RS10045
subclass of: SO_0000673
so part of: F1564_RS10045
location: complement(13660..14586)
location: region:13660-14586:-1
so has part: feature:13660-14586:-1:exon

WP_018450725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13660-14586:-1:exon

F1564_RS10050
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10050
so part of: sequence
location: 15096..15449
location: region:15096-15449:1
so has part: feature:15096-15449:1:exon
subclass of: SO_0000010

position:15096:1
position: 15096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15449:1
position: 15449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15096-15449:1:exon

F1564_RS10050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011528990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MCPTFWVHSRNHQLKIYLSGEEKELFNEKMKLAKCRTMSHFIRKCMLEKEIYEVDLEPFRDLQGLLSNVTNSLNQIAKRVNQTGIIYRDDIEDMKKSIEKFSKELWDIHSLLLGRAR
SIO_010081: F1564_RS10050
subclass of: SO_0000673
so part of: F1564_RS10050
location: 15096..15449
location: region:15096-15449:1
so has part: feature:15096-15449:1:exon

WP_040505637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15096-15449:1:exon

F1564_RS10055
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10055
old locus tag: JCM16776_p1021
so part of: sequence
location: 15655..17697
location: region:15655-17697:1
so has part: feature:15655-17697:1:exon
subclass of: SO_0000010

position:15655:1
position: 15655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17697:1
position: 17697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15655-17697:1:exon

F1564_RS10055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10055
old locus tag: JCM16776_p1021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005971533.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPRIFRIHGDNIVECERIAKLILEETDPTSVEISLLSSSTIVYNLRFNYLGLHFEWQLELLPGFNKAGRRRWEANIFVGLKDSGSFLDETPDAIVTYVENGLETILYAIEFCSALQAGNQAWQRSGRAFSTGRTGCPYLYIVDFVKYELDARTRERKALRFPNPAVPYSYISFSKESDNFVAQVYVRSEEFDKQFDCSLRNFDEDNFADVELSRYIVKKMCGFDTSDEEELILQKNLNVVLFLASSSHPTTNFTPAHWRRLYECHQGIVQFSIENSKFNFRKTITAKGHHGNSSKFLNLVESLSVGLASKDLPFGIIPAANRRRLAKGIRRLYSAYDAAVLNRIASDHSDLILCMIKGFKPRGDDNRPDRGILPLAAMLASTDIEVMTYIYGPVIERNFNALISNPERLAASNGFWRVILALSDFVALDVPVLAGRSYDEEVLLDTSALKERYVGQLPDENGLTQEDFSSIPQSFHEDDVDTGIHFLFSHLLHDVCFEGMCNPPGGDWSGLSVLYDDYEVRWLSLPRVSEEVDGKRPDHVLELFGVFDRPVLLSIESKERSFDLEANVGEGLVNYIYNLMNYVPNVERLVHPRLGEWTQSEHLVDFKGFEVISAAAYLRGSAQANHIVFERSHCDMLFIMEPVGHGWEIEVVPATPATEILKKFICDKVAEIGFDEITLF
SIO_010081: F1564_RS10055
subclass of: SO_0000673
so part of: F1564_RS10055
location: 15655..17697
location: region:15655-17697:1
so has part: feature:15655-17697:1:exon

WP_018450723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15655-17697:1:exon

F1564_RS10060
type: Gene
subclass of: SO_0000704
RO_0002162: 157691
locus tag: F1564_RS10060
so part of: sequence
location: complement(17699..18181)
location: region:17699-18181:-1
so has part: feature:17699-18181:-1:exon
subclass of: SO_0000010

position:17699:-1
position: 17699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18181:-1
position: 18181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17699-18181:-1:exon

F1564_RS10060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 157691
locus tag: F1564_RS10060
inference: COORDINATES: protein motif:HMM:NF014177.2
GO function: GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0032775 - DNA methylation on adenine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA adenine methylase
translation: MFLSRTCVNGLIRFNTNGDFNNSLHHTRPGIAPDSLEKIILDWSKHIQGTEFIAEDYTITTETAKEGDLIYLDPPYFHTKGRYYGTIDFEAFLTNLEKLNSKGIKYMLSFDGIRGEDDFTVELPKELYKRHEFIPSGNSSFKKVMDKKNIHVLESLYLNW
SIO_010081: F1564_RS10060
subclass of: SO_0000673
so part of: F1564_RS10060
location: complement(17699..18181)
location: region:17699-18181:-1
so has part: feature:17699-18181:-1:exon

WP_232053417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17699-18181:-1:exon