Clostridium estertheticum subsp. estertheticum strain DSM 8809 plasmid pDSM8809, complete sequence.
Clostridium estertheticum subsp. estertheticum
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete Genome Sequence of Clostridium estertheticum DSM 8809, a Microbe Identified in Spoiled Vacuum Packed Beef
Submitted (17-MAY-2016) Centre for Food Safety, University College Dublin, Belfield, Dublin D04 V1W8, Ireland
REFSEQ INFORMATION: The reference sequence is identical to\nCP015757.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP2 v. 26/11/2015\nGenome Coverage :: 522x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:25:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,595\nCDSs (total) :: 4,454\nGenes (coding) :: 4,393\nCDSs (with protein) :: 4,393\nGenes (RNA) :: 141\nrRNAs :: 17, 16, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 17, 16, 15 (5S, 16S, 23S)\ntRNAs :: 89\nncRNAs :: 4\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 14 of 61\nPseudo Genes (incomplete) :: 51 of 61\nPseudo Genes (internal stop) :: 13 of 61\nPseudo Genes (multiple problems) :: 14 of 61\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Clostridium estertheticum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024365.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040308.1
COORDINATES: similar to AA sequence:RefSeq:WP_008789382.1
COORDINATES: protein motif:HMM:NF013954.2
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: protein motif:HMM:NF039658.1
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF037887.2
Cthe_2314 family HEPN domain-containing protein
COORDINATES: protein motif:HMM:NF026863.2
COORDINATES: similar to AA sequence:RefSeq:WP_015617852.1