Haematospirillum jordaniae strain H5569 plasmid unnamed 1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Haematospirillum.
Complete Genome of H5569, the type strain of the newly described species Haematospirillium jordaniae
Submitted (23-FEB-2016) NCEZID/DHCPP/BSPB/SBRL, CDC, 1600 Clifton Rd, Atlanta, GA 30333, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP014526.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-DEC-2015\nAssembly Method :: CLC NGS Cell v. December-2015; Manual\n contig joining based on optical mapping\n v. December-2015\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/30/2023 01:57:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,303\nCDSs (total) :: 2,227\nGenes (coding) :: 2,201\nCDSs (with protein) :: 2,201\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 8 of 26\nPseudo Genes (incomplete) :: 18 of 26\nPseudo Genes (internal stop) :: 4 of 26\nPseudo Genes (multiple problems) :: 4 of 26\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haematospirillum jordaniae
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021220.2
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004421799.1
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: protein motif:HMM:TIGR01644.1
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016927.2
COORDINATES: protein motif:HMM:NF018586.2
COORDINATES: protein motif:HMM:NF013152.2
COORDINATES: similar to AA sequence:RefSeq:WP_015973898.1
COORDINATES: protein motif:HMM:NF017713.2
GO:0019069 - viral capsid assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF017731.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011506698.1
GO:0019028 - viral capsid [Evidence IEA]
COORDINATES: protein motif:HMM:NF017716.2
COORDINATES: similar to AA sequence:RefSeq:WP_019646949.1
COORDINATES: similar to AA sequence:RefSeq:WP_014416323.1
COORDINATES: similar to AA sequence:RefSeq:WP_003589354.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008598572.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015916808.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004119731.1
COORDINATES: similar to AA sequence:RefSeq:WP_008944507.1
COORDINATES: similar to AA sequence:RefSeq:WP_015784569.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012505217.1
COORDINATES: similar to AA sequence:RefSeq:WP_005921205.1
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025742.2
COORDINATES: similar to AA sequence:RefSeq:WP_010705376.1
COORDINATES: similar to AA sequence:RefSeq:WP_015857128.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016453102.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_014327150.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: protein motif:HMM:TIGR01760.1
COORDINATES: protein motif:HMM:NF021614.2
GO:0098003 - viral tail assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01611.1
COORDINATES: similar to AA sequence:RefSeq:WP_000046109.1