Haloplanus rubicundus strain CBA1113 plasmid pCBA1113-02, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloplanus.
Genome sequences of Haloplanus sp. CBA1113
Submitted (19-JUL-2018) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP031152.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 265.83x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 01:39:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,695\nCDSs (total) :: 3,629\nGenes (coding) :: 3,563\nCDSs (with protein) :: 3,563\nGenes (RNA) :: 66\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 2\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 23 of 66\nPseudo Genes (incomplete) :: 54 of 66\nPseudo Genes (internal stop) :: 12 of 66\nPseudo Genes (multiple problems) :: 18 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008327227.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014053108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053110.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488131.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514849.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005038839.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007189769.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189770.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971387.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004061502.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004043292.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222457.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004055210.1
COORDINATES: similar to AA sequence:RefSeq:WP_008445663.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046337.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825220.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048546.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180992.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992646.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344285.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048542.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762281.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443153.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458668.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541532.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667810.1
GO:0016208 - AMP binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004595862.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013440752.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060470.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788681.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142117.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652796.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006653510.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_007982237.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_008308641.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538722.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004213848.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213849.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033611.0
COORDINATES: similar to AA sequence:RefSeq:WP_014053544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743295.1
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945783.1
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: similar to AA sequence:RefSeq:WP_008385857.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006181512.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006886149.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008523974.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894353.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040969.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008444080.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886148.1
COORDINATES: protein motif:HMM:NF002222.0
COORDINATES: similar to AA sequence:RefSeq:WP_009488096.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004055077.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005041263.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014030573.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189825.1
COORDINATES: protein motif:HMM:NF016366.2
COORDINATES: similar to AA sequence:RefSeq:WP_013035318.1
GO:0003729 - mRNA binding [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011222449.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222450.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181062.1
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_006181071.1
sugar-specific transcriptional regulator TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_006184782.1