Bacillus weihaiensis strain Alg07 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
Complete genome sequence and transcriptomic analysis of a novel marine strain Bacillus weihaiensis reveals the mechanism of brown algae degradation
Submitted (09-JUN-2016) The Laboratory of Functional Sugar and Natural Bioactive Products, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP016021.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.2.0\nGenome Coverage :: 106.75x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 11:32:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,272\nCDSs (total) :: 4,126\nGenes (coding) :: 4,043\nCDSs (with protein) :: 4,043\nGenes (RNA) :: 146\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 7\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 37 of 83\nPseudo Genes (incomplete) :: 54 of 83\nPseudo Genes (internal stop) :: 22 of 83\nPseudo Genes (multiple problems) :: 24 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000040570.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000003057.1
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017695210.1
COORDINATES: protein motif:HMM:NF024793.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018768154.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011888482.1
COORDINATES: similar to AA sequence:RefSeq:WP_000717829.1