Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence.
type: Entry
definition: Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence.
sequence version: NZ_CP051544.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP051544.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14591402
keyword: RefSeq
source: Paracoccus sanguinis
organism: Paracoccus sanguinis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP051544.1.\nBacteria and source DNA available from NEB microbial collection\n1783.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: PspOM_new_HGAP3_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 164.22x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,248\nCDSs (total) :: 3,190\nGenes (coding) :: 3,116\nCDSs (with protein) :: 3,116\nGenes (RNA) :: 58\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 21 of 74\nPseudo Genes (incomplete) :: 60 of 74\nPseudo Genes (internal stop) :: 2 of 74\nPseudo Genes (multiple problems) :: 9 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 43005
topology: circular
so has quality: SO_0000988
location: 1..43005
location: region:1-43005:1
RO_0002162: 1545044

NZ_CP051544
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14591402
type: BioSample
SIO_000068: biosample

1
title: Genome-Wide Identification of 5-Methylcytosine Sites in Bacterial Genomes By High-Throughput Sequencing of MspJI Restriction Fragments
author: Wu, V.
journal: Unpublished

2
title: Direct Submission
author: Fomenkov, A.
author: Anton, B.P.
author: Roberts, R.J.
journal: Submitted (13-APR-2020) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43005:1
position: 43005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-43005:1:source
so part of: sequence
organism: Paracoccus sanguinis
mol type: genomic DNA
strain: OM2164
plasmid: pPspOM44

1545044
type: Taxonomy
SIO_000068: taxonomy

HGN31_RS15980
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
gene: aceE
locus tag: HGN31_RS15980
old locus tag: HGN31_15975
so part of: sequence
location: join(42482..43005,1..1513)
location: region:1-43005:1
so has part: feature:42482-43005:1:exon
so has part: feature:1-1513:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:42482-43005:1:exon

position:42482:1
position: 42482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1513:1:exon

position:1513:1
position: 1513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HGN31_RS15980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
gene: aceE
locus tag: HGN31_RS15980
old locus tag: HGN31_15975
EC number: 1.2.4.1
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO component: GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO function: GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
GO process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
translation: MKYMHNRGLIDMADRKVWCFLGDGEMDEPESRGAIDLASREKLDNLIFVINCNLQRLDGPVRGNGKIVQELEGDFRGAGWNVIKLLWGKGWDQLLERDTTGRLRQLMDETVDGDYQTFKSKDGAYIRKHFFGKYPETAALVEDWTDDQIWALSRGGHDPEKVYTAFRKAIETKNQPTCLLIKTIKGYGMGSAGEGQNITHQQKKMAEEQLRAFRDRFRIPVSDEDLPKAPFVALNTAQKAYLADRRKALGGDFPKRSSQAPKLEIPPLEAFQAQLTGTGEREISTTMAFVRILTTLIRDKNLGKHVVPIVPDESRTFGMEGLFRSIGIYNPEGQKYTPEDREQMSYYREAVDGQVLQEGINEAGAMADWIAAATSYSNHGVPMIPFFIYYSMFGFQRVGDLAWAAGDSRARGFMLGGTAGRTTLNGEGLQHEDGHSHILAGTIPNCISYDPTFQHEVAVIVHHGLTRMFQDQEDVYFYLTLMNENYSHPDMPDGVEDGIIRGLYRFREAAQPAERHVNLMGSGTILVQAIKAADMLEADFGVTADIWSATSFNELARDGQDAARWNRLNPLEAPRVPYVTQALSGAKGPFIAATDYMKNYAEQIRAFVPGRYTVLGTDGFGRSDSRVNLRRFFEVDANHIAAAAMVDLFREGAIDEATLRHALSRYDIDGGKPNPRLV
SIO_010081: HGN31_RS15980
subclass of: SO_0000673
so part of: HGN31_RS15980
location: join(42482..43005,1..1513)
location: region:1-43005:1
so has part: feature:42482-43005:1:exon
so has part: feature:1-1513:1:exon

WP_244961242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42482-43005:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1513:1:exon

HGN31_RS15985
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
gene: aceF
locus tag: HGN31_RS15985
old locus tag: HGN31_15980
so part of: sequence
location: 1535..2812
location: region:1535-2812:1
so has part: feature:1535-2812:1:exon
subclass of: SO_0000010

position:1535:1
position: 1535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2812:1
position: 2812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1535-2812:1:exon

HGN31_RS15985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
gene: aceF
locus tag: HGN31_RS15985
old locus tag: HGN31_15980
EC number: 2.3.1.12
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012331181.1
GO component: GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]
GO function: GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA]
GO process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydrolipoyllysine-residue acetyltransferase
translation: MAIEVNVPDIGDFKDVPVIGILVNVGDSIAVEDPLIELESDKATMEVPSPVAGRIAAISVNVGDRVSEGALILTVEAEGVTAADAPAQDAPKQNIPDRPAPAAGSAAAPVAAAPAGGAITDSGFGKAHASPSVRAFARQLGVDLGRINGSGRKGRILREDVAAALKASAAPVAAAPTQGGMGIPPIPVVDFSKFGPVEDVEMPRIKKLSGPALHRSWLNVPHVTHNEDADITEIDRYRKELDDEAKKDGYRVTLLSFVIKASVSALRKHWEFNSSIHPDGDKLIRKSYYNIGFAADTPNGLVVPVIKDADRKGIIEISRELGELSAKARAGELKSQDMQGATFTISSLGGIGGTSFTPIVNAPEVAILGLTRSRMAPVWDGAQFVARNMLPMSLSYDHRAVDGALAARFAATLRHLLGDVRRIML
SIO_010081: HGN31_RS15985
subclass of: SO_0000673
so part of: HGN31_RS15985
location: 1535..2812
location: region:1535-2812:1
so has part: feature:1535-2812:1:exon

WP_168784069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1535-2812:1:exon

HGN31_RS15990
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
gene: lpdA
locus tag: HGN31_RS15990
old locus tag: HGN31_15985
so part of: sequence
location: 2827..4599
location: region:2827-4599:1
so has part: feature:2827-4599:1:exon
subclass of: SO_0000010

position:2827:1
position: 2827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4599:1
position: 4599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2827-4599:1:exon

HGN31_RS15990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
gene: lpdA
locus tag: HGN31_RS15990
old locus tag: HGN31_15985
EC number: 1.8.1.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009828024.1
GO function: GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydrolipoyl dehydrogenase
translation: MEVKVPDIGDFKDVPVISILVAVGDEVAEEQPLIELESDKATMEVPSPAAGRIAAIAVKPGDRVSEGALILRLEEAAGAATGEVEPRNTDSGYGGRGGPTDAPAGPQPAPAAVPASARGDIHAEVVVLGSGPGGYTAAFRAADLGKKVVLIERNPTLGGVCLNVGCIPSKALLHAAKVITEAEEMAGHGIAFDTPVVDLDKLRGWKDSVVKQLTGGLSGLAKGRKVQVVTGTGRFTGPNMIEVERDGAKTSVSFDQCIIAAGSEPVTLPFIPHDDPRVIDSTGALELDGIPERMLVLGGGIIGLEMACVYDALGTRITVVELMDQIIPGADKDIVKPLHKRIEGRYEKILLKTRVTDVKAGDDGLTVTFEDEKGATTTDTFDRLLVAVGRRPNGKLIGAEAAGVAVDDRGFIAVDSQQRTNVPHIFAIGDVVGQPMLAHKAVHEGKVAAEVAAGQNRHFDARVIPSVAYTDPEVAWVGVTEAQARAEGRKIGKGVFPWAASGRSLSLGRSEGITKVIFDEADDRVIGACIVGPNAGDLIAEVALAIEMGADAVDLGHTIHPHPTLSETVNFAAEMFEGTITDLIPPKKRH
SIO_010081: HGN31_RS15990
subclass of: SO_0000673
so part of: HGN31_RS15990
location: 2827..4599
location: region:2827-4599:1
so has part: feature:2827-4599:1:exon

WP_168784070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2827-4599:1:exon

HGN31_RS15995
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS15995
old locus tag: HGN31_15990
so part of: sequence
location: 4711..6486
location: region:4711-6486:1
so has part: feature:4711-6486:1:exon
subclass of: SO_0000010

position:4711:1
position: 4711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6486:1
position: 6486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4711-6486:1:exon

HGN31_RS15995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS15995
old locus tag: HGN31_15990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019994825.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-lactate permease
translation: MTGFLIFILALLPIATVFLLLVVLERSAKLSMFVAYLVTAATALLVWGTDLNKVLGATANGAITAISLLYIIFGAILLLFTLEESGGIRSIRSGFTSISPDRRVQAIIIAWLFGSLIEGASGFGTPAAIAAPLLVAIGFPAMAAVLVTLIIQSTPVSFGAVGTPILVGVNTGLGGQEIVESTIAPMAYSDYLLEIAVKVATIHSLVGFLIPLILVGMLTRFFGSNRSFIEGFRIWKFALFAGLAFTIPYWIIANVLGPEFPSLLGGIIGLLIVVPAARAGFLMPKEIFDFPPRTQWDDAWVGKLDDLEDHHASRPVMPLLKAWAPYLLVVALLVLTRAVGPVKAWLTSPEVTLALDNLFSSGINARVQVLYLPGTVLILASIFTFFLHGMSGRDYGRALRSSGSTMIAAAPALLLAVPMVQVFINSASDSLASMPIVLAEGVSSAVGQAWPMFAPLIGSMGAFVAGSNTVSNMMFSLFQFSTAEQIGMGAAGAGTVVALQAIGGAAGNMICVHNVVAASATVGLVNREGEIIRMTLIPMTYYIVQGGFIGLALLAGGFNMWWIAAAVWAAAVLLFMSRNRGRASNPVAVRS
SIO_010081: HGN31_RS15995
subclass of: SO_0000673
so part of: HGN31_RS15995
location: 4711..6486
location: region:4711-6486:1
so has part: feature:4711-6486:1:exon

WP_168784071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4711-6486:1:exon

HGN31_RS16000
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16000
old locus tag: HGN31_15995
so part of: sequence
location: 6497..7264
location: region:6497-7264:1
so has part: feature:6497-7264:1:exon
subclass of: SO_0000010

position:6497:1
position: 6497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7264:1
position: 7264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6497-7264:1:exon

HGN31_RS16000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16000
old locus tag: HGN31_15995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011749200.1
GO function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: (Fe-S)-binding protein
translation: MSAKPSPRVGLFVTCLVDAIRPGIGFAAIQLLEEAGCRVEVPQAQTCCGQPALNSGDDKDAADLARRTIAAFEGHDYVVLPSGSCAGTMVHAYPELLAGDPEWAARARDFAARTHEITSFLVDVMGYRPQGRRLDATATYHDSCAGLRELGIAAQPRALLASVEGLEMRGLEGNDVCCGFGGTFCVKYSSISNAIVTEKAEAVERTGADLLLSGDLGCLMNMAGKLHRRGAKTRCFHTIEVLAGRAGGPAIGEEG
SIO_010081: HGN31_RS16000
subclass of: SO_0000673
so part of: HGN31_RS16000
location: 6497..7264
location: region:6497-7264:1
so has part: feature:6497-7264:1:exon

WP_036733434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6497-7264:1:exon

HGN31_RS16005
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16005
old locus tag: HGN31_16000
so part of: sequence
location: 7267..8706
location: region:7267-8706:1
so has part: feature:7267-8706:1:exon
subclass of: SO_0000010

position:7267:1
position: 7267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8706:1
position: 8706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7267-8706:1:exon

HGN31_RS16005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16005
old locus tag: HGN31_16000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011749199.1
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO process: GO:0019516 - lactate oxidation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lactate utilization protein B
translation: MNAPQQGFKERADAELKNAVLKIAIDRTTGNAERKRAVAVAAFPEFQAARARGRAIKDHVIAHLDHYLEMFERNATAAGATVHWASDDAEARAIITRICLEADAKLVTRAKSMLGEEIGLPHALADAGIERVETDLAEHIIQLAGERPSHIVWPAMHRTREQVAILFKEAHHPPPAADDPATMVQSARRELRAKFLGADVGISGANFLVADTGATCTVTNEGNAELTTTPPRIHIVTAGIEKLVPSTAHAFALLRLLVRSATGGEMTQYTTFHCGPKRPGDADGPEEMHIVLVDNGRTRMLADEFRPMLRCIRCGACMNHCVVYRQIGGHAYGGTYPGPMGAVLTPVLDGLAQSRDLPHACTMNGRCAEVCPVEIPLPTLLRAWRTRSWRERLEPRSVRAALGLWAMAARRPWLYRLGSRIGVRALRLFGRRGWIGSLPLAGGWTAYRDLPRPSGRTFMEQYRAGQAGRAGQMGREARK
SIO_010081: HGN31_RS16005
subclass of: SO_0000673
so part of: HGN31_RS16005
location: 7267..8706
location: region:7267-8706:1
so has part: feature:7267-8706:1:exon

WP_168784072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7267-8706:1:exon

HGN31_RS16010
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16010
old locus tag: HGN31_16005
so part of: sequence
location: 8703..9344
location: region:8703-9344:1
so has part: feature:8703-9344:1:exon
subclass of: SO_0000010

position:8703:1
position: 8703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9344:1
position: 9344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8703-9344:1:exon

HGN31_RS16010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16010
old locus tag: HGN31_16005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009820493.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LUD domain-containing protein
translation: MSARDRILAAIRAARPAPLPPAEAIAAEAAALLDAPESVRPRPVEAVLAAEFVRKASALGTSFDHLPDRAAIPLAVKRYLDTHGLPPALALQPAPALAALDWTGIDTHDTVAPDQRAALGLALWGIAETGSLVIHSGVDAPILLSFLPLHHIVVLEERSLLPHLEDYAARMAGQPQPRNAILITGPSGTTDIEGSYVRGAHGPGFLHILMIGG
SIO_010081: HGN31_RS16010
subclass of: SO_0000673
so part of: HGN31_RS16010
location: 8703..9344
location: region:8703-9344:1
so has part: feature:8703-9344:1:exon

WP_168784073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8703-9344:1:exon

HGN31_RS16015
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16015
old locus tag: HGN31_16010
so part of: sequence
location: 10107..10961
location: region:10107-10961:1
so has part: feature:10107-10961:1:exon
subclass of: SO_0000010

position:10107:1
position: 10107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10961:1
position: 10961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10107-10961:1:exon

HGN31_RS16015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16015
old locus tag: HGN31_16010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009811393.1
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DMT family transporter
translation: MQSPAPLTVLGLVALATTAIVCGDTAGKLLTGAGVQPLFVAWSRFALAALLLFWMLGLGAAGLGRLLDWRLILRAALIVGAIASILTALRTEPIANVFGAFFIGPIVAYVLSALLLGERVSWARTVMLALGFAGVLLVVRPGGEMGTGMLFAVLAGTLYGSYLAATRWLTAFYPPPFLLGSQLLIGAVLLLPAGLASIPASTDLRVWVLVIVSSLASAFGNYLLVVVNRTTPATVSAPLIYFQLIAATVIGFFVFGDWPEPLTLLGLAVIFASGVGGLALVPKR
SIO_010081: HGN31_RS16015
subclass of: SO_0000673
so part of: HGN31_RS16015
location: 10107..10961
location: region:10107-10961:1
so has part: feature:10107-10961:1:exon

WP_211096386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10107-10961:1:exon

HGN31_RS16020
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16020
old locus tag: HGN31_16015
pseudo: true
so part of: sequence
location: 11464..>11613
location: region:11464-11613:1
so has part: feature:11464-11613:1:exon
subclass of: SO_0000010

position:11464:1
position: 11464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11613:1
position: 11613
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11464-11613:1:exon

HGN31_RS16020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16020
old locus tag: HGN31_16015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: HGN31_RS16020
subclass of: SO_0000673
so part of: HGN31_RS16020
location: 11464..>11613
location: region:11464-11613:1
so has part: feature:11464-11613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11464-11613:1:exon

HGN31_RS16025
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16025
old locus tag: HGN31_16020
so part of: sequence
location: 12327..13274
location: region:12327-13274:1
so has part: feature:12327-13274:1:exon
subclass of: SO_0000010

position:12327:1
position: 12327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13274:1
position: 13274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12327-13274:1:exon

HGN31_RS16025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16025
old locus tag: HGN31_16020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003601302.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: manganese catalase family protein
translation: MFMRVDQLQTELPRPLRADPNAAAALQELLGGKYGEMSTLGNYMFQSFNFRSKSKLKPFYNLVAAITAEELGHVELVSHGIAMLANGPDKPGADEADGGDVSDAPFAAMKDIRSAASFFSHAGGAVPVNSNSMSWNVDMVTTTGNVVFDLLHNFHLECGARLHKLRVYESLTQDNATGREVCGYLLVRGSVHAHAYALALKKLTGVAIEQMLPTPNIPLDKIPECQKYLVEGSHRRLYTFSPGDYQAMRGIWEGEHALPTDPPGELVVVDGLPEGGKIHDLTGEPCAFTPDYAPEEMFEIAERLTKAAMQGAGSL
SIO_010081: HGN31_RS16025
subclass of: SO_0000673
so part of: HGN31_RS16025
location: 12327..13274
location: region:12327-13274:1
so has part: feature:12327-13274:1:exon

WP_036734705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12327-13274:1:exon

HGN31_RS16030
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16030
old locus tag: HGN31_16025
so part of: sequence
location: complement(13723..15132)
location: region:13723-15132:-1
so has part: feature:13723-15132:-1:exon
subclass of: SO_0000010

position:13723:-1
position: 13723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15132:-1
position: 15132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13723-15132:-1:exon

HGN31_RS16030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16030
old locus tag: HGN31_16025
EC number: 4.1.99.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012643726.1
GO function: GO:0003904 - deoxyribodipyrimidine photo-lyase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: deoxyribodipyrimidine photo-lyase
translation: MTSICLFRRDMRLTDNPALAAAAANGPVCAAFWVDAVLRAQGAASRWRVGEALKALDVDLRRQGGAMTVVEGDEAAVLALASAIDAREVHVCDWPAPARLEADRLLARTLEASGLRLVVHHAHTLLPPGAVQTRQGKGFRVFTPFSRAARTVGAAPPRPAPSGVCWIVPAGLPPGFAATIPDLAPDMDRGADVVNAHSPPAGEAAATTRLAQFISRSADYVAGRDRLDKQMAGSGLSDALAVGEISPRTVWAAAQDIACDPEHAPAAEKFMSELLWRDFAWSLLIEAPWMESKTWNPRFVGFPWREVREDLTAWQRGQTGEPLVDAGMRELFVTGRMHNRARMAAASYLTKHLLIDWRAGLDWFADTLMDWDPASNATNWQWVAGSGPDASPFFRIFNPATQAEKFDPDGVYRRRWLYGWQGSKSDGARAFFDAAPRSWGLDPSRGYDLRPIIGLAEGRLRALAAFEQV
SIO_010081: HGN31_RS16030
subclass of: SO_0000673
so part of: HGN31_RS16030
location: complement(13723..15132)
location: region:13723-15132:-1
so has part: feature:13723-15132:-1:exon

WP_081969176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13723-15132:-1:exon

HGN31_RS16600
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16600
so part of: sequence
location: complement(15152..15295)
location: region:15152-15295:-1
so has part: feature:15152-15295:-1:exon
subclass of: SO_0000010

position:15152:-1
position: 15152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15295:-1
position: 15295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15152-15295:-1:exon

HGN31_RS16600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVVGYRVRAAKGERRFTAACTSVYRRRAHDDWTVVQHAQVALDDET
SIO_010081: HGN31_RS16600
subclass of: SO_0000673
so part of: HGN31_RS16600
location: complement(15152..15295)
location: region:15152-15295:-1
so has part: feature:15152-15295:-1:exon

WP_197055290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15152-15295:-1:exon

HGN31_RS16040
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
gene: arsB
locus tag: HGN31_RS16040
old locus tag: HGN31_16035
so part of: sequence
location: complement(15666..16709)
location: region:15666-16709:-1
so has part: feature:15666-16709:-1:exon
subclass of: SO_0000010

position:15666:-1
position: 15666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16709:-1
position: 16709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15666-16709:-1:exon

HGN31_RS16040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
gene: arsB
locus tag: HGN31_RS16040
old locus tag: HGN31_16035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005864146.1
GO function: GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ACR3 family arsenite efflux transporter
translation: MSDAAMDRPAPLGRFERWLTLWIALAIILGIIIGSIAPGLVGSIAAAEVAGINLVVAALIWAMVYPMMIGVDFGAVANVARQPRGLLVTLAVNWLIKPFTMAALAVLFFEHVFAPWIAPEDAAQYIAGLILLGAAPCTAMVFVWSQLTRGDETYTLVQVSVNDLVMVVAFAPIVALLLGVTDIAVPWRTLVLATVLYIVLPLIAGLITRRALGSEAAVDAFIARAKPWSIIGLVATVVILFALQGNVILDRPLVIAMIAVPILVQSYGIFALAYAAAFALKVPHRIAAPCALIGTSNFFELAVAVAISLFGLNSGAALATVVGVLVEVPVMLTLVAFANRTRERFAG
SIO_010081: HGN31_RS16040
subclass of: SO_0000673
so part of: HGN31_RS16040
location: complement(15666..16709)
location: region:15666-16709:-1
so has part: feature:15666-16709:-1:exon

WP_036734703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15666-16709:-1:exon

HGN31_RS16045
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16045
old locus tag: HGN31_16040
so part of: sequence
location: complement(16706..17533)
location: region:16706-17533:-1
so has part: feature:16706-17533:-1:exon
subclass of: SO_0000010

position:16706:-1
position: 16706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17533:-1
position: 17533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16706-17533:-1:exon

HGN31_RS16045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16045
old locus tag: HGN31_16040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011908442.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MESSSALTAFAALSQDMRLQALRHLVAAEPDGLTAGEIAAALDARPNTLSTNLGVLSQANLVRSQREGRQIRYFARLDTIGALIGFLTDDCCGGNPAVCGPLTRSPEPTMHDAPFNVLFLCTGNSARSLIAEAVLNADPSGRFRAFSAGSQPAGIPNPRTIQLLDRLGHDTSQLRSKSWDEFAAPDAPRMDFVFTVCDAAAAEPCPYWPGQPMSAHWGVPDPAAATGSEAEIAAAFNAAHRTLATRIGLFTALPIGSLERMSLKRKLDQIGEARP
SIO_010081: HGN31_RS16045
subclass of: SO_0000673
so part of: HGN31_RS16045
location: complement(16706..17533)
location: region:16706-17533:-1
so has part: feature:16706-17533:-1:exon

WP_168784094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16706-17533:-1:exon

HGN31_RS16050
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16050
old locus tag: HGN31_16045
so part of: sequence
location: 17679..18218
location: region:17679-18218:1
so has part: feature:17679-18218:1:exon
subclass of: SO_0000010

position:17679:1
position: 17679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18218:1
position: 18218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17679-18218:1:exon

HGN31_RS16050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16050
old locus tag: HGN31_16045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655531.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MILGYARVSTEDQHLDAQLAALETAGAGRVFAEKVSGTRTARPELERLIDQLRPGDVVVVTKYDRLSRSLQDLLGIVARIQAAGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERIAERTREGLAAARRRGRVGGRPPALSPEQRAEVRRLRDDDRRSIAELARLFRVSQNTIRRA
SIO_010081: HGN31_RS16050
subclass of: SO_0000673
so part of: HGN31_RS16050
location: 17679..18218
location: region:17679-18218:1
so has part: feature:17679-18218:1:exon

WP_168784075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17679-18218:1:exon

HGN31_RS16055
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16055
old locus tag: HGN31_16050
so part of: sequence
location: complement(18297..18689)
location: region:18297-18689:-1
so has part: feature:18297-18689:-1:exon
subclass of: SO_0000010

position:18297:-1
position: 18297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18689:-1
position: 18689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18297-18689:-1:exon

HGN31_RS16055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16055
old locus tag: HGN31_16050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011331387.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MLILDASAIIGWIMPDEAGIDLEPLIARGEQLLAPWLIWVELRNILIVSERRGRLPAGMGDQIADAVDALQIQLDSSASSAVVMDLARRHGLTAYDALYLEAALRHGAMLATLDGKLRAAAVAEAVALAG
SIO_010081: HGN31_RS16055
subclass of: SO_0000673
so part of: HGN31_RS16055
location: complement(18297..18689)
location: region:18297-18689:-1
so has part: feature:18297-18689:-1:exon

WP_168784076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18297-18689:-1:exon

HGN31_RS16060
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16060
old locus tag: HGN31_16055
so part of: sequence
location: complement(18690..18935)
location: region:18690-18935:-1
so has part: feature:18690-18935:-1:exon
subclass of: SO_0000010

position:18690:-1
position: 18690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18935:-1
position: 18935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18690-18935:-1:exon

HGN31_RS16060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16060
old locus tag: HGN31_16055
inference: COORDINATES: protein motif:HMM:TIGR01552.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MREIGAFEAKTHLSELLAAAEAGESIIITRRGTAVARLVPAGQGGDRASALARVATLRRRLGSMVPLTSDEILSARDEGRR
SIO_010081: HGN31_RS16060
subclass of: SO_0000673
so part of: HGN31_RS16060
location: complement(18690..18935)
location: region:18690-18935:-1
so has part: feature:18690-18935:-1:exon

WP_168784077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18690-18935:-1:exon

HGN31_RS16065
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16065
old locus tag: HGN31_16060
so part of: sequence
location: complement(19052..19315)
location: region:19052-19315:-1
so has part: feature:19052-19315:-1:exon
subclass of: SO_0000010

position:19052:-1
position: 19052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19315:-1
position: 19315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19052-19315:-1:exon

HGN31_RS16065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16065
old locus tag: HGN31_16060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017930026.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MAKKPIALDGLLNTSAEPVVTGIPQRGALPAADARPAPKKRAGEKRLTLALDGETYRRLRLHAAQTDQTHQDILEYALMQYLNGTNA
SIO_010081: HGN31_RS16065
subclass of: SO_0000673
so part of: HGN31_RS16065
location: complement(19052..19315)
location: region:19052-19315:-1
so has part: feature:19052-19315:-1:exon

WP_168784078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19052-19315:-1:exon

HGN31_RS16070
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16070
old locus tag: HGN31_16065
so part of: sequence
location: complement(19308..19922)
location: region:19308-19922:-1
so has part: feature:19308-19922:-1:exon
subclass of: SO_0000010

position:19308:-1
position: 19308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19922:-1
position: 19922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19308-19922:-1:exon

HGN31_RS16070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16070
old locus tag: HGN31_16065
inference: COORDINATES: protein motif:HMM:NF013793.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTVVVAAQKGGAGKTTLTRNLAVAASMEGKRVLCLDLDPQGSLRAWWNSREADAPSMLDRDPQPKDLAATLRAVGKQFDFCFVDTPPAAPEWLSEVLAAADLVLIPVRPSPDDLRAVGATIAAATKAKASFAFALSQTPRARITEEAARVLAQHGRVAPVNIAQRVSYAETGATGQGVAETADDKAAAEIAALWDYVKGIVNG
SIO_010081: HGN31_RS16070
subclass of: SO_0000673
so part of: HGN31_RS16070
location: complement(19308..19922)
location: region:19308-19922:-1
so has part: feature:19308-19922:-1:exon

WP_168784079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19308-19922:-1:exon

HGN31_RS16075
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16075
old locus tag: HGN31_16070
so part of: sequence
location: 20322..21188
location: region:20322-21188:1
so has part: feature:20322-21188:1:exon
subclass of: SO_0000010

position:20322:1
position: 20322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21188:1
position: 21188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20322-21188:1:exon

HGN31_RS16075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16075
old locus tag: HGN31_16070
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MLEITPRRDEATKPAELIQITGHQTLSLNARRAITLLWHAAHLQGIEEGKDYSIEIDDLKSDDHKGYELVEDAIIALMKAILTVKLPDGKTRRVQFLGGNDLDDPDRASGVLTFSFDKRLVEILRDSAIWGKIALPVLMAFNSKYSISLYENLAQMSGLARKTYRDLTVDEFREVLGVEDGKYAAFGALNKHVIKPCMLEINALAPFGASILPVKTGKKVTHIRLAWWTKSKEDADLAWQEVNRSKVGRKARISTTVVGIVDPLASASRLSRETRRELRSGAGGLIED
SIO_010081: HGN31_RS16075
subclass of: SO_0000673
so part of: HGN31_RS16075
location: 20322..21188
location: region:20322-21188:1
so has part: feature:20322-21188:1:exon

WP_168784080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20322-21188:1:exon

HGN31_RS16080
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16080
old locus tag: HGN31_16075
so part of: sequence
location: complement(21472..22971)
location: region:21472-22971:-1
so has part: feature:21472-22971:-1:exon
subclass of: SO_0000010

position:21472:-1
position: 21472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22971:-1
position: 22971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21472-22971:-1:exon

HGN31_RS16080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16080
old locus tag: HGN31_16075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008554852.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MLDQTLALPEDPEELRSFTARLLAEVKAQAILIEKLRHQLAGHRAHRFGASSETAEQLQLALESSEIAAAAMTARMRLPDIEEKDKPKRRPIPDHIPRMEVELGPGAEACADCGGRLRRIGEDVTEELEYVPSRFIVNRIVRPRLTCTCCERFVQAPLPSRPIERGRPGPGLLAHVLVSKYADHLPLYRQSQIFDREGLDLDRSTLADWVGKSTALLEPLADAIGRHVLSAEAIFADDTPVSMLAPGTGKTRTARLWTYARDERPWGGSAPPAAWYRFSGDRKGQHPKDHLARYRGWMHADGYAGFEDLYRSGAIREVACMAHVRRKFVDIHRSQGSPIAQEAITRIARLYAVEKEARGAPPDRRAELRQAHAAPVFDELEAWLAMQLTTISGKSPLAAAIRYALTRMQRLRPYLDHGILELDNNAAERGMRAVALGRKNYLFVGSEAGGKAAAIAYTLIGTAKLNAVDPLAWLADTLARIPDYKITKVDDLLPWRWNG
SIO_010081: HGN31_RS16080
subclass of: SO_0000673
so part of: HGN31_RS16080
location: complement(21472..22971)
location: region:21472-22971:-1
so has part: feature:21472-22971:-1:exon

WP_168781947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21472-22971:-1:exon

HGN31_RS16085
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
gene: tnpB
locus tag: HGN31_RS16085
old locus tag: HGN31_16080
so part of: sequence
location: complement(23030..23377)
location: region:23030-23377:-1
so has part: feature:23030-23377:-1:exon
subclass of: SO_0000010

position:23030:-1
position: 23030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23377:-1
position: 23377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23030-23377:-1:exon

HGN31_RS16085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
gene: tnpB
locus tag: HGN31_RS16085
old locus tag: HGN31_16080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MIPVPANTRVWLAAGVTDMRKGFAALAAQAEAVLKQNPFGGHLFVFRGRRGDLVKVIWWDGQGACMFMKRLEKGRFVWPSAKEGKVALTPAQLSMLLEGIDWRAPERTWRPLAAG
SIO_010081: HGN31_RS16085
subclass of: SO_0000673
so part of: HGN31_RS16085
location: complement(23030..23377)
location: region:23030-23377:-1
so has part: feature:23030-23377:-1:exon

WP_168782219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23030-23377:-1:exon

HGN31_RS16090
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16090
old locus tag: HGN31_16085
so part of: sequence
location: complement(23374..23769)
location: region:23374-23769:-1
so has part: feature:23374-23769:-1:exon
subclass of: SO_0000010

position:23374:-1
position: 23374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23769:-1
position: 23769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23374-23769:-1:exon

HGN31_RS16090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16090
old locus tag: HGN31_16085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008033221.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MSTIDSGHYGDVVARRTKRLWTDEEKRSICFQTAAPGVSVAQVARRYAVNANLIFKWLRDPRYAPDPASAPPLPEQARFLPVEIVAEPRSAPAGPAADSCIEIELAGGHRMRISGNYDPGALARLIRGLTV
SIO_010081: HGN31_RS16090
subclass of: SO_0000673
so part of: HGN31_RS16090
location: complement(23374..23769)
location: region:23374-23769:-1
so has part: feature:23374-23769:-1:exon

WP_036712921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23374-23769:-1:exon

HGN31_RS16095
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
gene: mobV
locus tag: HGN31_RS16095
old locus tag: HGN31_16090
so part of: sequence
location: complement(24116..25636)
location: region:24116-25636:-1
so has part: feature:24116-25636:-1:exon
subclass of: SO_0000010

position:24116:-1
position: 24116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25636:-1
position: 25636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24116-25636:-1:exon

HGN31_RS16095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
gene: mobV
locus tag: HGN31_RS16095
old locus tag: HGN31_16090
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MISISDMITCSGICLSLHDYAQVSGRKGGQFNDELRLGRTNGGRTQDGGRRFAILRCAKIKNLGNMGASLQHTFRERETPNADPARIRDNTVLVGAEDSRGVLDAWRARAPEKIRANAVHGLEYFIGGSPGALNAMSREDQDAYFRRALEWLEERHGKENVLSAVIHRDEATPHMTVMTIPLDDRGKLNARALVGDRGKLSAMQTDFAEQVGRPHGLERGVQGSKATHERVKSAYAHLNDPEHAVELPERRTGNFLGRGKETDAQWRQRASEAATGALVGAWSARRREQREHEVKIVALERQTIGTPAMKRQLETLEREKRVLSRVVEGKNAEIRQLQRDLRHQEIALDVAWEYATRLGKRQGIEEKPLNEIIENPSRKPSAWTMPSSPAHRRQELRRRLGQPLPQPHFTSRLHCIRRSRKPPKWSRWIMSAKKKRRCSSGPRQGTKAGTMDTEAVSFQSCPRTLASPVNDPASPIAAAKDLNRSSRAPCPVPYPFPNCVSSSIGC
SIO_010081: HGN31_RS16095
subclass of: SO_0000673
so part of: HGN31_RS16095
location: complement(24116..25636)
location: region:24116-25636:-1
so has part: feature:24116-25636:-1:exon

WP_244961243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24116-25636:-1:exon

HGN31_RS16100
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16100
old locus tag: HGN31_16095
so part of: sequence
location: 25599..26824
location: region:25599-26824:1
so has part: feature:25599-26824:1:exon
subclass of: SO_0000010

position:25599:1
position: 25599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26824:1
position: 26824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25599-26824:1:exon

HGN31_RS16100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16100
old locus tag: HGN31_16095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611724.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MPEHVIMSEIEIITDGGRRRRWSAAEKLRIVEETLDKRASISVVARRNGVAPNLLYRWRRLMLDGGAVAVSEDDDVTSNRTVRQMEDRIRELERQLGRKTLEAEILREALDKARFKKTDLARAVASQGRFPVKVVAETLGVARSNLIDRLQGRAKPRRRYHKAQDAAVVPLIMALVSARPTYGYRRITALLNRQLRAESLAPVNHKRVYRIMKAHNLLLAREYSERPEHVHDGKIIVMRSNLRWCSDGFEFTCWNGDIVRGAFIIDAHDREIIAWRAVVNAGVSGSDIRDLMLEAVERRFGTYRAPAVIEMLSDNGSPYIAKDTQVFARQLGLKPCFTPVRSAQSNGISEAFVKTLKRDYVQVTPLPDARTALGLIGAWIEDYNENHPHSGLKMRSPREFIKVQTATA
SIO_010081: HGN31_RS16100
subclass of: SO_0000673
so part of: HGN31_RS16100
location: join(25599..25941,25941..26824)
location: region:25599-26824:1
so has part: feature:25599-25941:1:exon
so has part: feature:25941-26824:1:exon

WP_168783407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25599-25941:1:exon

position:25941:1
position: 25941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:25941-26824:1:exon

HGN31_RS16105
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16105
old locus tag: HGN31_16100
so part of: sequence
location: complement(27565..28146)
location: region:27565-28146:-1
so has part: feature:27565-28146:-1:exon
subclass of: SO_0000010

position:27565:-1
position: 27565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28146:-1
position: 28146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27565-28146:-1:exon

HGN31_RS16105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16105
old locus tag: HGN31_16100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLEPTADLCETLMELPHTAGLMELALIRRELGEVDDESPDTYSGPRSSMKLAQARHHHDPWPIIEAIRAPSWEIVEAAAGLGISVKGWVEGSTEVVERARFLFPDFSPVKVGLVVLSAGLVCARTEFEVKAVVGRAIPGLSPSGPGSTIDGFWPEGVSAAREHMLSLLRLEAPEMQLLGAAAPGRVAPALSGS
SIO_010081: HGN31_RS16105
subclass of: SO_0000673
so part of: HGN31_RS16105
location: complement(27565..28146)
location: region:27565-28146:-1
so has part: feature:27565-28146:-1:exon

WP_168784082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27565-28146:-1:exon

HGN31_RS16110
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16110
old locus tag: HGN31_16105
so part of: sequence
location: 28229..28438
location: region:28229-28438:1
so has part: feature:28229-28438:1:exon
subclass of: SO_0000010

position:28229:1
position: 28229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28438:1
position: 28438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28229-28438:1:exon

HGN31_RS16110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16110
old locus tag: HGN31_16105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013500677.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MDMRALVGRNFARIRREKGLTQEQVEARSGFSQQYLSGLERGKRNPTVITLYELAQALGVSHLELLVER
SIO_010081: HGN31_RS16110
subclass of: SO_0000673
so part of: HGN31_RS16110
location: 28229..28438
location: region:28229-28438:1
so has part: feature:28229-28438:1:exon

WP_036733484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28229-28438:1:exon

HGN31_RS16115
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16115
old locus tag: HGN31_16110
so part of: sequence
location: complement(29113..29856)
location: region:29113-29856:-1
so has part: feature:29113-29856:-1:exon
subclass of: SO_0000010

position:29113:-1
position: 29113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29856:-1
position: 29856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29113-29856:-1:exon

HGN31_RS16115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16115
old locus tag: HGN31_16110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011750834.1
GO function: GO:0042834 - peptidoglycan binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidoglycan-binding protein
translation: MTPSSFIKAATVMVAMAVPAHADDTVKDIVGGIAKQYLQQEQDRAAFAQAQSVNTLSAYQSYLRQFPNGAYASHARDRVERLGGTTPAGSGGVSLSAADRVEVQRRLNALGYSTGGTDGSFGPGTRRAIALWQRDRNYAQTGTLTRAQATEILRGRSTGDVPSAGSAAAAEAAGGGSAAQTERALGLSIAQRSAVQAGLTRRGFDTRGVDGTFGPGTRRAIANWQRANDLSSTGYLTGAQFQRLTTR
SIO_010081: HGN31_RS16115
subclass of: SO_0000673
so part of: HGN31_RS16115
location: complement(29113..29856)
location: region:29113-29856:-1
so has part: feature:29113-29856:-1:exon

WP_244961239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29113-29856:-1:exon

HGN31_RS16685
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16685
pseudo: true
so part of: sequence
location: complement(<29962..>30033)
location: region:29962-30033:-1
so has part: feature:29962-30033:-1:exon
subclass of: SO_0000010

position:29962:-1
position: 29962
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:30033:-1
position: 30033
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29962-30033:-1:exon

HGN31_RS16685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016849151.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: GTP-binding protein
SIO_010081: HGN31_RS16685
subclass of: SO_0000673
so part of: HGN31_RS16685
location: complement(<29962..>30033)
location: region:29962-30033:-1
so has part: feature:29962-30033:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29962-30033:-1:exon

HGN31_RS16120
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16120
old locus tag: HGN31_16115
so part of: sequence
location: complement(30209..30454)
location: region:30209-30454:-1
so has part: feature:30209-30454:-1:exon
subclass of: SO_0000010

position:30209:-1
position: 30209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30454:-1
position: 30454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30209-30454:-1:exon

HGN31_RS16120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16120
old locus tag: HGN31_16115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFCETATGDEGARLVSEAGWLGLSSDGPPVEVTAQDLDGGVTQYESLDRGEMIAVRSGDLAFDYRRRTPRGVLQFKGNCVE
SIO_010081: HGN31_RS16120
subclass of: SO_0000673
so part of: HGN31_RS16120
location: complement(30209..30454)
location: region:30209-30454:-1
so has part: feature:30209-30454:-1:exon

WP_168784083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30209-30454:-1:exon

HGN31_RS16125
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16125
old locus tag: HGN31_16120
so part of: sequence
location: complement(30614..31102)
location: region:30614-31102:-1
so has part: feature:30614-31102:-1:exon
subclass of: SO_0000010

position:30614:-1
position: 30614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31102:-1
position: 31102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30614-31102:-1:exon

HGN31_RS16125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16125
old locus tag: HGN31_16120
inference: COORDINATES: protein motif:HMM:NF018684.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysozyme inhibitor LprI family protein
translation: MTRLLLAAASLAPALLAPLPALALAFDDELLPACLAAAQTHGAREDCIQVAHLACLDAEREKAEDRIGSMTACTQAATAQWQVRLDRAQAALMAWVRDGYAENLPLLEAEITAFPVFRDAVCAYEARHYAHGEGGLIAAEACVMRETARQALRIESWNGGGR
SIO_010081: HGN31_RS16125
subclass of: SO_0000673
so part of: HGN31_RS16125
location: complement(30614..31102)
location: region:30614-31102:-1
so has part: feature:30614-31102:-1:exon

WP_168784084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30614-31102:-1:exon

HGN31_RS16130
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16130
old locus tag: HGN31_16125
so part of: sequence
location: complement(31099..31563)
location: region:31099-31563:-1
so has part: feature:31099-31563:-1:exon
subclass of: SO_0000010

position:31099:-1
position: 31099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31563:-1
position: 31563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31099-31563:-1:exon

HGN31_RS16130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16130
old locus tag: HGN31_16125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWHWTIALITIAAVPALAEEADYDPRFLAACLYHMEGEAARAGCIGIGAQVCLDSERTDSAQRMAGCYAAEHDDWQARQDSGLAGLREKHKSPDMLTEGLAARQVWAADLCGAYALTVTDGGETLEVAREECLMRETAQAALTLEPYVPVEREK
SIO_010081: HGN31_RS16130
subclass of: SO_0000673
so part of: HGN31_RS16130
location: complement(31099..31563)
location: region:31099-31563:-1
so has part: feature:31099-31563:-1:exon

WP_168784085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31099-31563:-1:exon

HGN31_RS16135
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16135
old locus tag: HGN31_16130
so part of: sequence
location: 31783..32010
location: region:31783-32010:1
so has part: feature:31783-32010:1:exon
subclass of: SO_0000010

position:31783:1
position: 31783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32010:1
position: 32010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31783-32010:1:exon

HGN31_RS16135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16135
old locus tag: HGN31_16130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503866.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MQVAKWGNSLAVRLPAGLVREMGLKEGDRVELTPAEGHLIVRRQPTPAELLDGLRRFRGRLPVADRLCRDAANER
SIO_010081: HGN31_RS16135
subclass of: SO_0000673
so part of: HGN31_RS16135
location: 31783..32010
location: region:31783-32010:1
so has part: feature:31783-32010:1:exon

WP_168784086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31783-32010:1:exon

HGN31_RS16140
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16140
old locus tag: HGN31_16135
so part of: sequence
location: 32000..32398
location: region:32000-32398:1
so has part: feature:32000-32398:1:exon
subclass of: SO_0000010

position:32000:1
position: 32000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32398:1
position: 32398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32000-32398:1:exon

HGN31_RS16140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16140
old locus tag: HGN31_16135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008876096.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIN domain-containing protein
translation: MSADFLDTNVILYLLDDGPKADRAAEVVASGGTISVQVLNETLANCIRKARMSWHEAAEFLAEVQAVCPVCDLTAEVHRVGLALGARYGFSVYDAMIVAAALVNGCDRLLSEDMQDGMLVEGRLRIIDPFQV
SIO_010081: HGN31_RS16140
subclass of: SO_0000673
so part of: HGN31_RS16140
location: 32000..32398
location: region:32000-32398:1
so has part: feature:32000-32398:1:exon

WP_168784087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32000-32398:1:exon

HGN31_RS16605
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16605
so part of: sequence
location: 32480..32680
location: region:32480-32680:1
so has part: feature:32480-32680:1:exon
subclass of: SO_0000010

position:32480:1
position: 32480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32680:1
position: 32680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32480-32680:1:exon

HGN31_RS16605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16605
inference: COORDINATES: protein motif:HMM:NF025063.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MALHRPGQAAAEWLHRKLQRQPARRMPEEIFDSLADARRKLALWRYDYNNVRPHSSLGNKTPSDAR
SIO_010081: HGN31_RS16605
subclass of: SO_0000673
so part of: HGN31_RS16605
location: 32480..32680
location: region:32480-32680:1
so has part: feature:32480-32680:1:exon

WP_244961240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32480-32680:1:exon

HGN31_RS16150
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16150
old locus tag: HGN31_16145
so part of: sequence
location: complement(32952..34121)
location: region:32952-34121:-1
so has part: feature:32952-34121:-1:exon
subclass of: SO_0000010

position:32952:-1
position: 32952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34121:-1
position: 34121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32952-34121:-1:exon

HGN31_RS16150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16150
old locus tag: HGN31_16145
EC number: 1.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017318631.1
GO function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc-dependent alcohol dehydrogenase
translation: MRALTFQGTGKVQVDTVDDPTIEETTDVVIRVTSTAICGSDLHLYDGFIPEVRKGDVLGHEFMGEIVAIGKGVGKHKVGDRVLVPFNIACGNCDFCRVDAFSLCENTNPDHEKVEKLYGQSGGGMFGYSHLFGGYAGGQAELVRVPHADVGLLAVPESLPDEKVLFLTDIFPTGYQAVEQIGTGPGDIVAVWGAGPVGQFAVRSALMLGAERVFSLDFEKGRLALAREAGAETIDLSEQDSYASLMELTGGKLPNRCVDAVGMEAHGASVIGNVYDRVKTTLMMETDRPNALRDAIMCCRKGGAVSIPGVYAGLVDKFPIGAAFGKGLMLRGGQTNTRAYMDRLLKRIEAGEIDPSVIITHRGTLEDGPGFYESFRDKRSECVKCVMTP
SIO_010081: HGN31_RS16150
subclass of: SO_0000673
so part of: HGN31_RS16150
location: complement(32952..34121)
location: region:32952-34121:-1
so has part: feature:32952-34121:-1:exon

WP_168784088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32952-34121:-1:exon

HGN31_RS16155
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16155
old locus tag: HGN31_16150
pseudo: true
so part of: sequence
location: <34268..>34381
location: region:34268-34381:1
so has part: feature:34268-34381:1:exon
subclass of: SO_0000010

position:34268:1
position: 34268
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:34381:1
position: 34381
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34268-34381:1:exon

HGN31_RS16155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16155
old locus tag: HGN31_16150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5/IS1182 family transposase
SIO_010081: HGN31_RS16155
subclass of: SO_0000673
so part of: HGN31_RS16155
location: <34268..>34381
location: region:34268-34381:1
so has part: feature:34268-34381:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34268-34381:1:exon

HGN31_RS16160
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16160
old locus tag: HGN31_16155
so part of: sequence
location: complement(34427..34720)
location: region:34427-34720:-1
so has part: feature:34427-34720:-1:exon
subclass of: SO_0000010

position:34427:-1
position: 34427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34720:-1
position: 34720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34427-34720:-1:exon

HGN31_RS16160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16160
old locus tag: HGN31_16155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017503034.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antibiotic biosynthesis monooxygenase
translation: MAKLALYVPLKAKAGKESDVADFLTSALPLVQAEPGTLTWYAIQEGPGAYAIFDTFDTEEDRQAHLDGKVAAALMDKADELFSEPPQIHKFTLLAAK
SIO_010081: HGN31_RS16160
subclass of: SO_0000673
so part of: HGN31_RS16160
location: complement(34427..34720)
location: region:34427-34720:-1
so has part: feature:34427-34720:-1:exon

WP_168784089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34427-34720:-1:exon

HGN31_RS16165
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16165
old locus tag: HGN31_16160
so part of: sequence
location: complement(34919..35347)
location: region:34919-35347:-1
so has part: feature:34919-35347:-1:exon
subclass of: SO_0000010

position:34919:-1
position: 34919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35347:-1
position: 35347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34919-35347:-1:exon

HGN31_RS16165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16165
old locus tag: HGN31_16160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020050886.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MRAVLLDTHTLIWSLVMSSELSATARDVIEAADVAYVAPISFYEITQKHRLGKWPELDPVIGKLLPLWRAQGTEIAPYTAEIAFLAGAMQWSHRDPFDRMIAATAIALACPLISKDAAFDALGGSPEWHGRIWDAAALPSPA
SIO_010081: HGN31_RS16165
subclass of: SO_0000673
so part of: HGN31_RS16165
location: complement(34919..35347)
location: region:34919-35347:-1
so has part: feature:34919-35347:-1:exon

WP_036733463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34919-35347:-1:exon

HGN31_RS16170
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16170
old locus tag: HGN31_16165
so part of: sequence
location: complement(35344..35565)
location: region:35344-35565:-1
so has part: feature:35344-35565:-1:exon
subclass of: SO_0000010

position:35344:-1
position: 35344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35565:-1
position: 35565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35344-35565:-1:exon

HGN31_RS16170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16170
old locus tag: HGN31_16165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016920429.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MQMNIAEAKAKLSELIAAAEKGEDVIIARGGQPAVRLVSVHRPTVRIGIGDGLVSRVPDFLAPMSENELRDWE
SIO_010081: HGN31_RS16170
subclass of: SO_0000673
so part of: HGN31_RS16170
location: complement(35344..35565)
location: region:35344-35565:-1
so has part: feature:35344-35565:-1:exon

WP_036733460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35344-35565:-1:exon

HGN31_RS16175
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16175
old locus tag: HGN31_16170
so part of: sequence
location: 35972..36112
location: region:35972-36112:1
so has part: feature:35972-36112:1:exon
subclass of: SO_0000010

position:35972:1
position: 35972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36112:1
position: 36112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35972-36112:1:exon

HGN31_RS16175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16175
old locus tag: HGN31_16170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIADLREDRDRWRQQATALLADQRSAPAPDQPPAQPRRGFWKRLFG
SIO_010081: HGN31_RS16175
subclass of: SO_0000673
so part of: HGN31_RS16175
location: 35972..36112
location: region:35972-36112:1
so has part: feature:35972-36112:1:exon

WP_168784090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35972-36112:1:exon

HGN31_RS16180
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16180
old locus tag: HGN31_16175
so part of: sequence
location: complement(36116..39325)
location: region:36116-39325:-1
so has part: feature:36116-39325:-1:exon
subclass of: SO_0000010

position:36116:-1
position: 36116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39325:-1
position: 39325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36116-39325:-1:exon

HGN31_RS16180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16180
old locus tag: HGN31_16175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018324378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MEAKQGTGAAPEEGQLDLLAAAPPVQRQGHGVRGSKRWDDTMLRARNQADGYARAVAREDGWPPFLLIVDVGHVIEVYADFSGQGQGYTQFPDGNRYRITLDDLRDAATLDRLQAIWTDPHSLDPTRVSAQVTRQVAEHLAELGRSFEAQGHAPEAVARFLMRALFTMFAEDVQLIPEGAFSKLLQDRRGHPEHAAPMLESLWQTMNTGGFSPALSCDLKRFNGGLFREATALPLSAMQLGLLIQAASHDWREVEPAIFGTLLERALDTRQRHKLGAHYTPRAYVERLVNPTVIEPLRAEWRDIQAAAVTLAGQDKLDEARATVRDFHRRLCEVRVVDPACGSGNFLYVALELMKRLEGEVIALLRELGEDQGALALAGHTVDPHQFLGIEVNPWAAAVAELVLWIGYLQWHFRTHGTASPAEPVLRDFRNIENRDAVLAWDGTRPRLDDAGQPVTRWDGVSTIRHPVTGEQVPDPAARVQVLDYLKPRPARWPEAEFIVGNPPFIGASRMREALGDGYAEALRAAYPRMPESADFVMFWWDKAALATRAGKTRRFGFITTNSLRQTFNRQVLEPHLADPKKPLSLAFAIPDHPWVDAGDGAAVRIAMTVAAAGSAPGRLFTVTDERRGEREAEGRPVTLSGQIGKIHANLRIGADVAGAKPLRANAGISSPGVKLHGAGFIVTPAEAQALGLGTVPGLEAHIRSYRNGRDLTATPRGVMVIDLFGLSEAEVRTRFPAVYQHVLDKVKPERDQNNRDSYKRNWWIHGEPRRDLRPALEGLPRYIATVETAKHRIFSLLDATILPDNKLIIIALADTWHFSIVSSRIHWVWAIANAAKIGMYDGDAVYPKGQCFDPFPFPDATEAQKARLRALGEELDAHRKAQQAAHPRLTLTALYNVLEKLRAGERIEGRDRETYDAGLVGILRDIHDRIDAAVAEAYGWPADLDDEAILTRLVDLNRARAAEEAAGLVRWLRPDYQNPAGRIAAAKGQQVELDVGAAAEAADKALWPKALPEQIAAVRAVLSDMGEATPEQVARQFKRARAASVKPLLESLSALGQARLIEGGRFAA
SIO_010081: HGN31_RS16180
subclass of: SO_0000673
so part of: HGN31_RS16180
location: complement(36116..39325)
location: region:36116-39325:-1
so has part: feature:36116-39325:-1:exon

WP_244961244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36116-39325:-1:exon

HGN31_RS16185
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16185
old locus tag: HGN31_16180
pseudo: true
so part of: sequence
location: <39870..40214
location: region:39870-40214:1
so has part: feature:39870-40214:1:exon
subclass of: SO_0000010

position:39870:1
position: 39870
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:40214:1
position: 40214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39870-40214:1:exon

HGN31_RS16185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16185
old locus tag: HGN31_16180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611724.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: integrase core domain-containing protein
SIO_010081: HGN31_RS16185
subclass of: SO_0000673
so part of: HGN31_RS16185
location: <39870..40214
location: region:39870-40214:1
so has part: feature:39870-40214:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39870-40214:1:exon

HGN31_RS16190
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16190
old locus tag: HGN31_16185
so part of: sequence
location: complement(40370..41143)
location: region:40370-41143:-1
so has part: feature:40370-41143:-1:exon
subclass of: SO_0000010

position:40370:-1
position: 40370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41143:-1
position: 41143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40370-41143:-1:exon

HGN31_RS16190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16190
old locus tag: HGN31_16185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008327498.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FadR/GntR family transcriptional regulator
translation: MIAVDVFEPIDHESVVQMVVDKIETMIVDGVLKGGARLPSEREMADAFHVSRPKLREALQVLESRNLVTVRHGDGTYIAELTGRAMSPAMLALYARHGEAFHDYLEYRREQEAFATRLAAQRATAADKERLAAIRDELRAAWDAQDREAEQEADFRLHSAVVDASHNTTLIHMMASVFDLTRRGIFYNRDLLRSIDGTGRRLLDQHLGIIAAIEAGDAALADKAARDHLDFVEQSIRLGREVQRRERRARMRLNSAE
SIO_010081: HGN31_RS16190
subclass of: SO_0000673
so part of: HGN31_RS16190
location: complement(40370..41143)
location: region:40370-41143:-1
so has part: feature:40370-41143:-1:exon

WP_168784092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40370-41143:-1:exon

HGN31_RS16610
type: Gene
subclass of: SO_0000704
RO_0002162: 1545044
locus tag: HGN31_RS16610
so part of: sequence
location: 41864..42472
location: region:41864-42472:1
so has part: feature:41864-42472:1:exon
subclass of: SO_0000010

position:41864:1
position: 41864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42472:1
position: 42472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41864-42472:1:exon

HGN31_RS16610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1545044
locus tag: HGN31_RS16610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDQASDIDPVESQEWQDAIADVIERDGANRAHFLLDKAVQQARAAGANLPFSATTPYQNTIPVDDQHEFPGDLEMEWRIRTINRWNAMATVVRRNKESSEYGGHIASYASSAVMYDVGLNHFWRAQSEIHGGDLVFFQGHVIPGIYARSFMEGRITEEQLLNFRSEVGGGGLSSYPHPWLMPDYWQFPTVSMGLGPLMAIY
SIO_010081: HGN31_RS16610
subclass of: SO_0000673
so part of: HGN31_RS16610
location: 41864..42472
location: region:41864-42472:1
so has part: feature:41864-42472:1:exon

WP_244961241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41864-42472:1:exon