Sedimenticola thiotaurini strain SIP-G1 plasmid unnamed, complete sequence.
type: Entry
definition: Sedimenticola thiotaurini strain SIP-G1 plasmid unnamed, complete sequence.
sequence version: NZ_CP011413.1
sequence date: 2023-02-05
sequence: sequence
division: CON
label: NZ_CP011413.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03581174
keyword: RefSeq
source: Sedimenticola thiotaurini
organism: Sedimenticola thiotaurini
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Sedimenticola.
reference: 1
references: 26089430
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP011413.1.\n\nSource DNA is available from Jake Bailey, Dept. of Earth Sciences,\nUniversity of Minnesota.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Coverage :: 143x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:45:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,702\nCDSs (total) :: 3,641\nGenes (coding) :: 3,620\nCDSs (with protein) :: 3,620\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 5\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 5 of 21\nPseudo Genes (incomplete) :: 12 of 21\nPseudo Genes (internal stop) :: 6 of 21\nPseudo Genes (multiple problems) :: 2 of 21\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 33340
topology: circular
so has quality: SO_0000988
location: 1..33340
location: region:1-33340:1
RO_0002162: 1543721

NZ_CP011413
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03581174
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Sedimenticola thiotaurini Strain SIP-G1, a Polyphosphate- and Polyhydroxyalkanoate-Accumulating Sulfur-Oxidizing Gammaproteobacterium Isolated from Salt Marsh Sediments
author: Flood, B.E.
author: Jones, D.S.
author: Bailey, J.V.
journal: Genome Announc 3 (3), e00671-15 (2015)
pubmed: 26089430
comments: Publication Status: Online-Only

26089430
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Flood, B.E.
author: Jones, D.S.
author: Bailey, J.V.
journal: Submitted (11-MAY-2015) Earth Sciences, University of Minnesota, 310 Pillsbury Drive SE, Minneapolis, MN 55455, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33340:1
position: 33340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33340:1:source
so part of: sequence
organism: Sedimenticola thiotaurini
mol type: genomic DNA
strain: SIP-G1
isolation source: salt marsh
culture collection: ATCC:BAA-2640
type material: type strain of Sedimenticola thiotaurini
plasmid: unnamed
country: USA: Falmouth, MA
lat lon: 41.57585 N 70.63581 W
collection date: 2006-07-15
collected by: Beverly Flood

1543721
type: Taxonomy
SIO_000068: taxonomy

AAY24_RS18135
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18135
old locus tag: AAY24_18130
so part of: sequence
location: complement(279..869)
location: region:279-869:-1
so has part: feature:279-869:-1:exon
subclass of: SO_0000010

position:279:-1
position: 279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:869:-1
position: 869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279-869:-1:exon

AAY24_RS18135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18135
old locus tag: AAY24_18130
inference: COORDINATES: protein motif:HMM:NF013618.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transglycosylase SLT domain-containing protein
translation: MDIPALIDQCNLGAPPTVVEAIIRAESQEIPLALNVNPPEGVPTPPVPEFTSATDAAVYAVSMVSQGYTVDVGLMQVNSANLARFNVPIMEAFDPCKNIELGTRVYLEAAELVSKYPDHFTSPYARLQATLSVYNTGSPWAGIANGYARRVIDGMRYNQDIAGADMSVSFSLDEHSKDEISVLFVDKPNWGNNEKK
SIO_010081: AAY24_RS18135
subclass of: SO_0000673
so part of: AAY24_RS18135
location: complement(279..869)
location: region:279-869:-1
so has part: feature:279-869:-1:exon

WP_052761387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:279-869:-1:exon

AAY24_RS18140
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18140
old locus tag: AAY24_18135
so part of: sequence
location: complement(869..2038)
location: region:869-2038:-1
so has part: feature:869-2038:-1:exon
subclass of: SO_0000010

position:2038:-1
position: 2038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:869-2038:-1:exon

AAY24_RS18140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18140
old locus tag: AAY24_18135
inference: COORDINATES: protein motif:HMM:NF012993.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nitrilase-related carbon-nitrogen hydrolase
translation: MDGIALNQPLTYPFTLRLVFSIAVAGVSGALAWAGHAELLPLALILPAAWALAPCRLCAGAVAFVYHVAAARDVPQGAAIFFGTADVSGWFLVIGAGLLYALPFAALWSRNFTAWRGLLALLLVSLPPIGVFGWANPITAAGVLFPGAGWLGLAAVIALFAALTRWPLLALPLPLIVTLIQVEPPPAPAGWVAHDTSFLMASGQQDYLADAQRQQSIIEDVYRSDAKVVVLPETIVGRWSDASLFLWGELAQHARNKGQTILFGAELANGSGYTNSVLGLDVDGATPVYSQLMPVPVSMWKPWTDAGAIPQWFEVQTAIIDGQRTAFLICYEQLMAWPPLVVMLGDPDVLVGVSNDWWARGTSIPGIQRSALIAWSRLFGTKLIFAVNE
SIO_010081: AAY24_RS18140
subclass of: SO_0000673
so part of: AAY24_RS18140
location: complement(869..2038)
location: region:869-2038:-1
so has part: feature:869-2038:-1:exon

WP_052761388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:869-2038:-1:exon

AAY24_RS18145
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
gene: traF
locus tag: AAY24_RS18145
old locus tag: AAY24_18140
so part of: sequence
location: complement(2026..2541)
location: region:2026-2541:-1
so has part: feature:2026-2541:-1:exon
subclass of: SO_0000010

position:2026:-1
position: 2026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2541:-1
position: 2541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2026-2541:-1:exon

AAY24_RS18145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
gene: traF
locus tag: AAY24_RS18145
old locus tag: AAY24_18140
inference: COORDINATES: protein motif:HMM:TIGR02771.1
GO component: GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer signal peptidase TraF
translation: MSIPRPIVAAVGMLAIVVVGSEVAGLHLNHTASYPRGLWIETSGSDDRLPYVLACADHVADFETYKERGYLPWGMACSGTAPLLKRIWARPGDSWSVTPEGVVVNGELVSNTRPLEYDSAGRQLIPATGGTVPPGHVLLLSDYSPRSLDGRYFGTMPITQVLKEVKPLWTE
SIO_010081: AAY24_RS18145
subclass of: SO_0000673
so part of: AAY24_RS18145
location: complement(2026..2541)
location: region:2026-2541:-1
so has part: feature:2026-2541:-1:exon

WP_046861466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2026-2541:-1:exon

AAY24_RS18150
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18150
old locus tag: AAY24_18145
so part of: sequence
location: complement(2541..4433)
location: region:2541-4433:-1
so has part: feature:2541-4433:-1:exon
subclass of: SO_0000010

position:4433:-1
position: 4433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2541-4433:-1:exon

AAY24_RS18150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18150
old locus tag: AAY24_18145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003701841.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MSVPTPSIGVQALKRKSPSWGLLIVFVLLGAVLAFAAATQYTAYQYAYDPALGEPLFGRIYEPWAFIAWSLQWGNTDPDLYQTAYLVAASALVTVFAFYAIAVALTRRRTTANDSLHGTARWASREDIQEAGLLPAKGKKADGVFVGGYVDKKMIQYLRHDGPEHILGFAPTRSGKGVGLVIPTLLSWLHSVVVFDMKGENWALTAGWRKASGQRVLRFDPSDASGTGARFNPLQEIRLGSPHEVGDAQGLATIMADPEGKGLNDHWMKTGHALLVGVILHCLYKKQAEGRVATLTDLSYFLSDPARTLYDSLQEMVHFEHTSEGTHPTVAQAARDMLNREERELSSVHSTAVSYLTLYRDPVITRNTEESDFRIDDLMNHEDPVSLYIVVKPADLPRLRPLVRLIFTQIIQKLTDRMEFEGGRSVAHYKHRLLLLLDEFPALGRLEVVEQSLAFLAGYGIKAFLIVQDLAQLHKAYTKDEAVVSACHVRVAYAPNKIETAELLSRMTGKTTVIKKSVSVSGGRFGAVLDRATENLQEVERPLLTADECMRLPGPKKSPDGREILEPGDMLIMPSGFNAIYGKQVLYFKDPVLSKRSKLSPPIESDRIVAEADTVGADSRPASKLDALFD
SIO_010081: AAY24_RS18150
subclass of: SO_0000673
so part of: AAY24_RS18150
location: complement(2541..4433)
location: region:2541-4433:-1
so has part: feature:2541-4433:-1:exon

WP_046861467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2541-4433:-1:exon

AAY24_RS18715
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18715
so part of: sequence
location: complement(4434..6299)
location: region:4434-6299:-1
so has part: feature:4434-6299:-1:exon
subclass of: SO_0000010

position:4434:-1
position: 4434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6299:-1
position: 6299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4434-6299:-1:exon

AAY24_RS18715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18715
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIAKRSNRRSDGKSSFQQLARYIADSQHDGEKLIYSHFTNCLAEDGEMELAIKEIEATQALNTRSKSDKTYHLIASFHEGERPARDQLDDIEQTLADALGMGDHQRLAAVHDNTDHLHIHIAINKVHPETLRNITPYRDYHLLQAACRELEQRHGLIVDMGDPEAERVSARAQDFEAQQGQESFQSWVKGEPSQRLVALMERPKPNWEQLHQALDEYGLEIAPRGAGFVIRVKSDHHLSIRASKVSRSLSKGELTKRLGDYQEPVITAKPPAQAKRYEPKPFAKTPANALWKTYKDRQASIAADRQKELKRLSIELSKAYGVLRKEHQVKRAALKKRRDLRGPKKRAEYSVLRMERLGKQESIKSEFAKRREAVRTAHRSQSWPDFLREQSEQGNSDALAALRRVKPRSDQPGASYVEGNPAAEPSFFPSFTYKVSRNGDVTYFLGKHQVVDEGKRIRVGERFDDKTIEAALRMARNQFGKNLRLKGSNEFQRQAAAVAGRLNMDVSFTNPDLEAEKVSHVKTTNWTDPVQAFIASRNTTAGKVSDVLPHRRYRPQEDSGEAIYRGLRSTKGGPMVALFEKAGEYLVKPVDTKNAQALRGVRLGSRINTETHSGKSHDKER
SIO_010081: AAY24_RS18715
subclass of: SO_0000673
so part of: AAY24_RS18715
location: complement(4434..6299)
location: region:4434-6299:-1
so has part: feature:4434-6299:-1:exon

WP_082117277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4434-6299:-1:exon

AAY24_RS18160
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18160
old locus tag: AAY24_18155
so part of: sequence
location: complement(6296..6637)
location: region:6296-6637:-1
so has part: feature:6296-6637:-1:exon
subclass of: SO_0000010

position:6296:-1
position: 6296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6637:-1
position: 6637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6296-6637:-1:exon

AAY24_RS18160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18160
old locus tag: AAY24_18155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGSEKRQRTKHYPIRFFPEEFEEAERKAKAFSYPSVASLIRDLVTGVEPTSTLDQQAILELLRVNADLGRLGGLLKHWLQAKGAEKDLVPDIRALLRDIENTQRELKKKVKAL
SIO_010081: AAY24_RS18160
subclass of: SO_0000673
so part of: AAY24_RS18160
location: complement(6296..6637)
location: region:6296-6637:-1
so has part: feature:6296-6637:-1:exon

WP_046861468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6296-6637:-1:exon

AAY24_RS18165
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18165
old locus tag: AAY24_18160
so part of: sequence
location: 6846..7259
location: region:6846-7259:1
so has part: feature:6846-7259:1:exon
subclass of: SO_0000010

position:6846:1
position: 6846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7259:1
position: 7259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6846-7259:1:exon

AAY24_RS18165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18165
old locus tag: AAY24_18160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHPMNRQRLLERLRKTRSSGKTVVIERWPEIKEALRAGFDKKNIHQELLKDGLQLSYAQFARLTKELSDEDKEANDQTQETAPTAKTERKVAASPRPASKKKPAKPESRNEPPEGAAKKGDRRGFKFNPKPDKDELI
SIO_010081: AAY24_RS18165
subclass of: SO_0000673
so part of: AAY24_RS18165
location: 6846..7259
location: region:6846-7259:1
so has part: feature:6846-7259:1:exon

WP_234422311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6846-7259:1:exon

AAY24_RS18170
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18170
old locus tag: AAY24_18165
so part of: sequence
location: 7271..8011
location: region:7271-8011:1
so has part: feature:7271-8011:1:exon
subclass of: SO_0000010

position:7271:1
position: 7271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8011:1
position: 8011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7271-8011:1:exon

AAY24_RS18170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18170
old locus tag: AAY24_18165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017161032.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIAHFTMQGKGGIGKTFVAAILAQYISSTLDENGKLAVVDTDPVNATLSQYNAFEVEHLAIQDKDSTRINERNFDQLIEQMADAPDTQFVVDNGAASFVPLSNYLIENTAIEMLLDMGREVWVHPVITGGQGMLDTLNGLAQLIDQMPKTVKIVVWKNTYFGDIEQNGKPFEQMAVYKKHADRIHAVVEIPKYSADTYGIDIEQMLQQKRSFAQAVESPGFGLMSRQRLKNAQRDIFERVSEVLS
SIO_010081: AAY24_RS18170
subclass of: SO_0000673
so part of: AAY24_RS18170
location: 7271..8011
location: region:7271-8011:1
so has part: feature:7271-8011:1:exon

WP_046861470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7271-8011:1:exon

AAY24_RS18175
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18175
old locus tag: AAY24_18170
so part of: sequence
location: 8011..8442
location: region:8011-8442:1
so has part: feature:8011-8442:1:exon
subclass of: SO_0000010

position:8442:1
position: 8442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8011-8442:1:exon

AAY24_RS18175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18175
old locus tag: AAY24_18170
inference: COORDINATES: protein motif:HMM:NF023087.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELDRERLIQEVAARWGLVISKDDPIIGAVALNDVVLDLHMGRLSSALEDQSTRLDSLNQQQINASKQIAKKIIGEALALATTEIRQQAKQTQQQTDQAVGDQIKALGAALDDRAALKRQLMWAWSTAGFLGLLLVVVLLMVA
SIO_010081: AAY24_RS18175
subclass of: SO_0000673
so part of: AAY24_RS18175
location: 8011..8442
location: region:8011-8442:1
so has part: feature:8011-8442:1:exon

WP_046861471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8011-8442:1:exon

AAY24_RS18180
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18180
old locus tag: AAY24_18175
so part of: sequence
location: 8536..8793
location: region:8536-8793:1
so has part: feature:8536-8793:1:exon
subclass of: SO_0000010

position:8536:1
position: 8536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8536-8793:1:exon

AAY24_RS18180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18180
old locus tag: AAY24_18175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHSNIFYLSVSVLLLSTFQSPLSADSQFEKNMENAQKIDAEMEGDRQKENMRDKSHDFPRIKTGEDTSIGADPSKKEVNIRHTY
SIO_010081: AAY24_RS18180
subclass of: SO_0000673
so part of: AAY24_RS18180
location: 8536..8793
location: region:8536-8793:1
so has part: feature:8536-8793:1:exon

WP_199930603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8536-8793:1:exon

AAY24_RS19360
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS19360
so part of: sequence
location: 8851..9186
location: region:8851-9186:1
so has part: feature:8851-9186:1:exon
subclass of: SO_0000010

position:8851:1
position: 8851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9186:1
position: 9186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8851-9186:1:exon

AAY24_RS19360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS19360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVAIDKAVIAFILVATSLVEAAPSPSCILIDAINNSNSIQMYYQNMCGECVELTPYIRSSTGKYRMGTNLPTLSRGTNRLRLDAGENQNVFFDWQVGTWTGISKNVKACR
SIO_010081: AAY24_RS19360
subclass of: SO_0000673
so part of: AAY24_RS19360
location: 8851..9186
location: region:8851-9186:1
so has part: feature:8851-9186:1:exon

WP_199930604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8851-9186:1:exon

AAY24_RS18720
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18720
so part of: sequence
location: complement(9322..11085)
location: region:9322-11085:-1
so has part: feature:9322-11085:-1:exon
subclass of: SO_0000010

position:9322:-1
position: 9322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11085:-1
position: 11085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9322-11085:-1:exon

AAY24_RS18720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18720
inference: COORDINATES: protein motif:HMM:NF014691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MWNWQHPDWPNFEYDPSLFKERVEAFYRSAERLSGRIEGMAERYQSDTVIDLMLSEAITTSAIEGETLDRDSVRSSLLHLIGKEVASPNSDEKAAGAAALMVDVRKKWDQPLTHELLGGWQTMACPEDRTSLALRGMYRGDAMQIVSGPIGHYKVHFEAPAAKDVQGEMDRFLDWYNSTNPEKSTAPEISGPIRAAVAHLWFESIHPFDDGNGRVGRAISDHALSQSLGRPTIACLATAINEDRKNYYAALAQSSKGASLNINPFIDFFTATVNKAQDVAREEVDFVLNKARFYEAFADHLNDRQAKAIARVFAEGRKGFAGGLSGKNYMTITKCSQSTATRDLGELRDIGALVSHGQGRSTRYEIAFPEPQQAAFFTRGSTQGVDPMELNLAPDTPEQESLEEKISELMESTDVQSSLVVENAIRSGNLEDIRIALMEVDRMMEALEAGLSEFSDHDWASTDMDRDAIMDRMQKRADGPYAELTEKYLNQVAEEKGATIWPAKPDYQYSGEIVDADERFIYQQVADNTLIAHRADDFQDPGNELIGMDLTISQQPDREQEAADKRVKKIEPNQKSDSNEKGHDLGR
SIO_010081: AAY24_RS18720
subclass of: SO_0000673
so part of: AAY24_RS18720
location: complement(9322..11085)
location: region:9322-11085:-1
so has part: feature:9322-11085:-1:exon

WP_082117279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9322-11085:-1:exon

AAY24_RS18190
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18190
old locus tag: AAY24_18185
so part of: sequence
location: complement(11163..11417)
location: region:11163-11417:-1
so has part: feature:11163-11417:-1:exon
subclass of: SO_0000010

position:11163:-1
position: 11163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11417:-1
position: 11417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11163-11417:-1:exon

AAY24_RS18190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18190
old locus tag: AAY24_18185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVPMDQRRLVLRAYRAGFQGTPSQAASELTRLAVKSRLIRPRTDIPGQTLTNWAASGKPPLWAALAAAEWLKKHDPDFEKFHM
SIO_010081: AAY24_RS18190
subclass of: SO_0000673
so part of: AAY24_RS18190
location: complement(11163..11417)
location: region:11163-11417:-1
so has part: feature:11163-11417:-1:exon

WP_234422312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11163-11417:-1:exon

AAY24_RS18195
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18195
old locus tag: AAY24_18190
so part of: sequence
location: complement(11428..11658)
location: region:11428-11658:-1
so has part: feature:11428-11658:-1:exon
subclass of: SO_0000010

position:11428:-1
position: 11428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11658:-1
position: 11658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11428-11658:-1:exon

AAY24_RS18195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18195
old locus tag: AAY24_18190
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKEAVPEGTAFLEAHVMIMERYLNMVEGGERRVELTAEEEAAILAAYDYGLTSMGEEEIQELHAVLAKLKDQIHP
SIO_010081: AAY24_RS18195
subclass of: SO_0000673
so part of: AAY24_RS18195
location: complement(11428..11658)
location: region:11428-11658:-1
so has part: feature:11428-11658:-1:exon

WP_046861474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11428-11658:-1:exon

AAY24_RS18725
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18725
so part of: sequence
location: complement(11655..12668)
location: region:11655-12668:-1
so has part: feature:11655-12668:-1:exon
subclass of: SO_0000010

position:11655:-1
position: 11655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12668:-1
position: 12668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11655-12668:-1:exon

AAY24_RS18725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18725
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MKKGISSLASLMDEADQAGTGAPSEVAVELIERDPLQPRKTIDPEGLESLAASIAAQGVIQPIVVRPDPEGNGYFVVTGERRWRAAQLANLDTIPVVIREFEGSLLAVQLCENLDRENVPILEEAEAVARLVKELGKASEVAKALGKKAAWVSVRRKIAKGLELVAPFVESGATRDPETLSMLVDLHKLDAEAFERLQRRTDINRSMVRQAVDIAKGRVEEPKDPPKETAQAQSVQESVTEPSGGQSEDQEPLPAAPKRENQPKRLDRVVGSEPESTEEEGGPCEDGSELQAIDLLTRNLSSLLGVNVALHEEGEGGYLRIDFADRAELKRVMNHIS
SIO_010081: AAY24_RS18725
subclass of: SO_0000673
so part of: AAY24_RS18725
location: complement(11655..12668)
location: region:11655-12668:-1
so has part: feature:11655-12668:-1:exon

WP_082117280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11655-12668:-1:exon

AAY24_RS18205
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18205
old locus tag: AAY24_18200
so part of: sequence
location: complement(12665..13420)
location: region:12665-13420:-1
so has part: feature:12665-13420:-1:exon
subclass of: SO_0000010

position:12665:-1
position: 12665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13420:-1
position: 13420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12665-13420:-1:exon

AAY24_RS18205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18205
old locus tag: AAY24_18200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015282510.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTLVIANQKGGVGKSTVAVHLVWGAVEQGLRVLLVDFDGQANSTHTFIEEIAPTGAHASHLFKKKSCGAPLAISDRLAIVPADMAINDVEGLPLDTIEHPAAHLRRWEKDYDLCIIDTPPNLGRRLLAALIAGDSVVSPMALNGYSIDGLTELQRTIITIKKKFNPRLKNLGVLPNLVNQRSKTQTARLSELRQVLGDKVLPYILPSRVAVSDAIDNGHPVWKYTRGQSAAMAAKEMRHVVTAVIERATK
SIO_010081: AAY24_RS18205
subclass of: SO_0000673
so part of: AAY24_RS18205
location: complement(12665..13420)
location: region:12665-13420:-1
so has part: feature:12665-13420:-1:exon

WP_046861475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12665-13420:-1:exon

AAY24_RS18210
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18210
old locus tag: AAY24_18205
so part of: sequence
location: complement(13568..13909)
location: region:13568-13909:-1
so has part: feature:13568-13909:-1:exon
subclass of: SO_0000010

position:13568:-1
position: 13568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13909:-1
position: 13909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13568-13909:-1:exon

AAY24_RS18210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18210
old locus tag: AAY24_18205
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPDYTIYDRGTVEGRAERRDYSTVLLTHDEVTRVCYLIVSYDYFGITDVSHIAFYAASEGWEDLTETGFRSTFLDTRIVQPMGEDAGAILAAIYENAGVKYRVSPPIQPGLF
SIO_010081: AAY24_RS18210
subclass of: SO_0000673
so part of: AAY24_RS18210
location: complement(13568..13909)
location: region:13568-13909:-1
so has part: feature:13568-13909:-1:exon

WP_046861476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13568-13909:-1:exon

AAY24_RS18215
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18215
old locus tag: AAY24_18210
so part of: sequence
location: complement(13913..14803)
location: region:13913-14803:-1
so has part: feature:13913-14803:-1:exon
subclass of: SO_0000010

position:13913:-1
position: 13913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14803:-1
position: 14803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13913-14803:-1:exon

AAY24_RS18215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18215
old locus tag: AAY24_18210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017449218.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MKAKRDFYQEVTDKLIARMEAGANPVRSRWDGSGELTLPVNHNTGNHYNGLNILLLWISQEDQGFSSSHWMTYKQAKEKGGQVRKGEKGTTIIFYKTLEKDTGELDKDGNEVKAAVPMLRTFTVFNLDQIDGIDSPAKLAAGGGFEPHQMAEQILESSGVDIVEGGTRAFYRPSTDRVHMPDRDRFGNPEDFYATALHELTHATKAKHRCDRPKYESEIRGADYAFEELVAEIGAAFLMAGLSLPGMVQDHADYLSSWLEVLRNDKRAIFKAAAQAQKAHDWVMSAYADAQQKKAG
SIO_010081: AAY24_RS18215
subclass of: SO_0000673
so part of: AAY24_RS18215
location: complement(13913..14803)
location: region:13913-14803:-1
so has part: feature:13913-14803:-1:exon

WP_046861477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13913-14803:-1:exon

AAY24_RS18220
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18220
old locus tag: AAY24_18215
so part of: sequence
location: 16084..16800
location: region:16084-16800:1
so has part: feature:16084-16800:1:exon
subclass of: SO_0000010

position:16084:1
position: 16084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16800:1
position: 16800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16084-16800:1:exon

AAY24_RS18220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18220
old locus tag: AAY24_18215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015282519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MEAKEKNKAPEETKALLVTKANSLIEAAYTLSLNEQRIILACAAQLDGRKPPPRNTFLLTVDEFQGLFGTDPKSTYKEMEEATNRLYERDIRKIDGQTRKRMRWVYMAEYQKGEGRVKLGFSPEITPYLTMLNKRHTTYQLNEVRGLGSAYSIRLYEMLARFRDTGWFAISVDDFKERLQLVGKYPRFSNLKARVIDPAVKEIRAKTSLDVSWQPIKKGRTVETIRFSFEEKAQMELL
SIO_010081: AAY24_RS18220
subclass of: SO_0000673
so part of: AAY24_RS18220
location: 16084..16800
location: region:16084-16800:1
so has part: feature:16084-16800:1:exon

WP_046861478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16084-16800:1:exon

AAY24_RS18225
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18225
old locus tag: AAY24_18220
so part of: sequence
location: 16825..17031
location: region:16825-17031:1
so has part: feature:16825-17031:1:exon
subclass of: SO_0000010

position:16825:1
position: 16825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17031:1
position: 17031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16825-17031:1:exon

AAY24_RS18225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18225
old locus tag: AAY24_18220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDSLKNLARMIAENPNNQKIYDKMDYTLDKEMFVKRYGKQIAKLLSGLISEKVGQEAARMVWEQKKRG
SIO_010081: AAY24_RS18225
subclass of: SO_0000673
so part of: AAY24_RS18225
location: 16825..17031
location: region:16825-17031:1
so has part: feature:16825-17031:1:exon

WP_199930600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16825-17031:1:exon

AAY24_RS19040
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS19040
so part of: sequence
location: complement(17248..17454)
location: region:17248-17454:-1
so has part: feature:17248-17454:-1:exon
subclass of: SO_0000010

position:17248:-1
position: 17248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17454:-1
position: 17454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17248-17454:-1:exon

AAY24_RS19040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS19040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009813552.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEASTNKPSLIAYTVSGSDEKSYFNRVGAAWPNSKGGFQVRLFATPINGEIVLLPPKERVPAEPAED
SIO_010081: AAY24_RS19040
subclass of: SO_0000673
so part of: AAY24_RS19040
location: complement(17248..17454)
location: region:17248-17454:-1
so has part: feature:17248-17454:-1:exon

WP_082117281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17248-17454:-1:exon

AAY24_RS18235
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18235
old locus tag: AAY24_18230
so part of: sequence
location: 17718..18056
location: region:17718-18056:1
so has part: feature:17718-18056:1:exon
subclass of: SO_0000010

position:17718:1
position: 17718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18056:1
position: 18056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17718-18056:1:exon

AAY24_RS18235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18235
old locus tag: AAY24_18230
inference: COORDINATES: protein motif:HMM:NF024949.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSDMPTGLNDSPQNIVQRLTRVARERMNNQNNSGISKSARAILAKNLLRLRKAHGYGQQELADLSGLSKSFIGGLENARMNVSLDNLESLSRVLGVEVFVLLIPPDDPDPDK
SIO_010081: AAY24_RS18235
subclass of: SO_0000673
so part of: AAY24_RS18235
location: 17718..18056
location: region:17718-18056:1
so has part: feature:17718-18056:1:exon

WP_234422310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17718-18056:1:exon

AAY24_RS18240
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
gene: trbB
locus tag: AAY24_RS18240
old locus tag: AAY24_18235
so part of: sequence
location: 18196..19146
location: region:18196-19146:1
so has part: feature:18196-19146:1:exon
subclass of: SO_0000010

position:18196:1
position: 18196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19146:1
position: 19146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18196-19146:1:exon

AAY24_RS18240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
gene: trbB
locus tag: AAY24_RS18240
old locus tag: AAY24_18235
inference: COORDINATES: protein motif:HMM:TIGR02782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer ATPase TrbB
translation: MERLARLTRKLQTELGSDIVSALKDGSVTDIYLNDDGAVWVHRAGEPKKVLTKMSATQADNLIRTVASMSGGMITDKKPVVEARLPNGERFIGDMAPISRHPTFCIRKPARVVYTLESYVENGMMTEAQHQAIKQAVTNRKNILVVGGTGSGKTTLTNAILGAIAEITPEDRILIFEDTQELQCSAPDRSFKLTSDEVDMRALLRASMRQMPDRIVVGEVRGAEAEVVLKAWNTGHEGGVVTLHANSAREGVEKFQEYVEEGLPGTDKRRAIASAVDLVCYMPKRKKGVPPRLEEAVWLEGLKDGEYFFTTHRKEG
SIO_010081: AAY24_RS18240
subclass of: SO_0000673
so part of: AAY24_RS18240
location: 18196..19146
location: region:18196-19146:1
so has part: feature:18196-19146:1:exon

WP_046861481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18196-19146:1:exon

AAY24_RS18245
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18245
old locus tag: AAY24_18240
so part of: sequence
location: 19143..19463
location: region:19143-19463:1
so has part: feature:19143-19463:1:exon
subclass of: SO_0000010

position:19143:1
position: 19143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19463:1
position: 19463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19143-19463:1:exon

AAY24_RS18245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18245
old locus tag: AAY24_18240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009452544.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MNLKNTKILMVATAVLLFFIAGEALAGTATGLPWETPLQTLTNSITGPVALAISLIAIVVGGGMLIWGGEINDFARKMILIVLVIALIVMATNVLTTLFGATGAVV
SIO_010081: AAY24_RS18245
subclass of: SO_0000673
so part of: AAY24_RS18245
location: 19143..19463
location: region:19143-19463:1
so has part: feature:19143-19463:1:exon

WP_046861482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19143-19463:1:exon

AAY24_RS18250
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
gene: trbD
locus tag: AAY24_RS18250
old locus tag: AAY24_18245
so part of: sequence
location: 19467..19790
location: region:19467-19790:1
so has part: feature:19467-19790:1:exon
subclass of: SO_0000010

position:19467:1
position: 19467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19790:1
position: 19790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19467-19790:1:exon

AAY24_RS18250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
gene: trbD
locus tag: AAY24_RS18250
old locus tag: AAY24_18245
inference: COORDINATES: protein motif:HMM:NF010395.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbD
translation: MSQELQTVPIRSSLTRPRLIAGAERELFLFLLLICTSLVFVLMSLPAAIAGVIIWSGGYWALREMAKGDPMMSKIFFRHIRYRPFYRARSSRTVIDQKKGKKKQCYS
SIO_010081: AAY24_RS18250
subclass of: SO_0000673
so part of: AAY24_RS18250
location: 19467..19790
location: region:19467-19790:1
so has part: feature:19467-19790:1:exon

WP_046861483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19467-19790:1:exon

AAY24_RS18255
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18255
old locus tag: AAY24_18250
so part of: sequence
location: 19778..22201
location: region:19778-22201:1
so has part: feature:19778-22201:1:exon
subclass of: SO_0000010

position:19778:1
position: 19778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22201:1
position: 22201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19778-22201:1:exon

AAY24_RS18255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18255
old locus tag: AAY24_18250
inference: COORDINATES: protein motif:HMM:NF010404.0
note: type IV secretion system ATPase VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbE
translation: MLQLKAFRTKHKGLPDLLNYAAEIEDGVILGKDGALMAGWIYRGDDQSSAMPMQRNAVAAHVNSALSMLGSGWMIHNDCIRTPVAAYAKRELSHFPDPISKLIDEERRALFEEQGSYYESLHVLIVTYLPPTTGRSAVKAMMYEEDGKRKKATATIELDRFKRTISELETRLGALVSLEQLNGHPVETEDGRTEIQDELLGYIHWALTGIRQPIKLPPVPMYLDAVIGGQDFVGGVAPRVGNQHIRVVAIEGFPQESYPGILDALDQIPIPYRWSTRFIFLDAYEASAELEKYRKAWEQKERSLRDQIFNTQSGRVDLDAHSMKKDTIDAQAEANSGIVRFGYYTSVVVLMDENEERVEDTAKTVAQAIRNLGFASRIETINAVEAWLGSLPGHGVQNIRRPLLHTLNLAHMLPLSSVWAGEANNPCPFYPAGSPPLLYGATDGSTPWRFNIHVHDVGHTLILGPTGSGKSTKMVLMMAQFLRYPKASVFAFDKGYSAYVMCKATGGDHYDLAGDDTSIAFAPFSHVKSDRDMAWAREWVEKIAELQGVKLQPEHRKEIHRALTLLKESDHKTLTAFHATLQHQKLKDVIEPYTIDGPYGQLFDAETDSLKEGRFQVFEMEQLMGMGQQAVLPALDYLFYRIEKQLQGQPTLIVLDEAWVMFEHPVFREKIREWLKVLRKANAAVVMGTQSLSDVAGSGILDVINESCLTKIFLANPLAHEDEATALYRNLGLNGTQIDIVSSMVRRRDYYYTSPLGRRRYRLDLGPVALSFVAVSGKEEVAAARHVMEKHGQGWQMRWLEQKGARQ
SIO_010081: AAY24_RS18255
subclass of: SO_0000673
so part of: AAY24_RS18255
location: 19778..22201
location: region:19778-22201:1
so has part: feature:19778-22201:1:exon

WP_052761392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19778-22201:1:exon

AAY24_RS18260
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
gene: trbJ
locus tag: AAY24_RS18260
old locus tag: AAY24_18255
so part of: sequence
location: 22198..22992
location: region:22198-22992:1
so has part: feature:22198-22992:1:exon
subclass of: SO_0000010

position:22198:1
position: 22198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22992:1
position: 22992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22198-22992:1:exon

AAY24_RS18260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
gene: trbJ
locus tag: AAY24_RS18260
old locus tag: AAY24_18255
inference: COORDINATES: protein motif:HMM:TIGR02780.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKRIIAAVLMLVSGSASAGGGGLAGGATEITQLANNVELGAIFGEEAQQVAQQAQQLAHEIQMIQNQLNMYQNLLDNTSNLGSFIWGNVFSDLQALASAVQQGNAIAYSASNMNALWQQRYQGYSNYLAKTYGPGNFQSDYRHWYSTQRDGLHGALRSANLQSQQFATEEATLNTLENMSQTASGRMQAIQVGNQIAMQQVRQSQKLRELVMAQIQAQTNYLASEAEKDAANQARNEKFFSGASGVTVGNEAQYNPGNLSGTNP
SIO_010081: AAY24_RS18260
subclass of: SO_0000673
so part of: AAY24_RS18260
location: 22198..22992
location: region:22198-22992:1
so has part: feature:22198-22992:1:exon

WP_052761393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22198-22992:1:exon

AAY24_RS18265
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18265
old locus tag: AAY24_18260
so part of: sequence
location: 22989..23198
location: region:22989-23198:1
so has part: feature:22989-23198:1:exon
subclass of: SO_0000010

position:22989:1
position: 22989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23198:1
position: 23198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22989-23198:1:exon

AAY24_RS18265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18265
old locus tag: AAY24_18260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNIALPIIMLCTTVAMTGCGENDTQVNQITIEAKPEPAQEKEKQPRRRSGVVVGNETQYDPGNLSGRR
SIO_010081: AAY24_RS18265
subclass of: SO_0000673
so part of: AAY24_RS18265
location: 22989..23198
location: region:22989-23198:1
so has part: feature:22989-23198:1:exon

WP_046861485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22989-23198:1:exon

AAY24_RS18270
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
gene: trbL
locus tag: AAY24_RS18270
old locus tag: AAY24_18265
so part of: sequence
location: 23253..24455
location: region:23253-24455:1
so has part: feature:23253-24455:1:exon
subclass of: SO_0000010

position:23253:1
position: 23253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24455:1
position: 24455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23253-24455:1:exon

AAY24_RS18270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
gene: trbL
locus tag: AAY24_RS18270
old locus tag: AAY24_18265
inference: COORDINATES: protein motif:HMM:TIGR02783.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MKKETRMKKGLLLPLIALALLAYGDAAFAAINEDNLLDSIVNQYRTSASNWSAVITNAALWLFWSLALIEIVWTGITLAIRQADFVEVISEIVMRVIFIGFFLTLLTFGPAWAADIVDSLGQLASQASVAGGGLGTVSPGAVFDAGLDLADQMTSSISFWDDAVDSLGLLIAALIVIIVFALITAFLLMTMVEVWIVLFAGIILLGFGGSRFTKDFALKYLIYALSVGIKLFVMFLIIGIGQSFINQWVTNWENEDSQVLLAIGAAIVLLALVREIPNIMQGLMSGMSFATGDSLVRSGAQVLRGGAVAGAAVAGAGMGLAGGASAIRAATNLAHAQGASGFGQTAVAAARNLGSSFKSEAGEHARRGQFAGPKKGMGFRMAEAMKVAEKELNSNSIEKG
SIO_010081: AAY24_RS18270
subclass of: SO_0000673
so part of: AAY24_RS18270
location: 23253..24455
location: region:23253-24455:1
so has part: feature:23253-24455:1:exon

WP_082117282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23253-24455:1:exon

AAY24_RS18275
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18275
old locus tag: AAY24_18270
so part of: sequence
location: 24460..25140
location: region:24460-25140:1
so has part: feature:24460-25140:1:exon
subclass of: SO_0000010

position:24460:1
position: 24460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25140:1
position: 25140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24460-25140:1:exon

AAY24_RS18275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18275
old locus tag: AAY24_18270
inference: COORDINATES: protein motif:HMM:NF016238.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB8/TrbF family protein
translation: MSETANPYLEARREWNERYGSYIAQAATWRMVAVVALLLAIVSVGGLIYVAGKSQFIPYLVEVDGQGRAAAVGPLTEANEQNPMVTKAMLAGFIRNWREVTADIEIQKRRIFAAYAHISQADPSFTTANEYFKANDPFERAKTETVVVEVESPLSLGKGVWQLEWVERRRDRKGKTLGKPTRYQAVLHTAHAKASRDIKRIQVNPVGLYITEFNWTEMLATAGDAQ
SIO_010081: AAY24_RS18275
subclass of: SO_0000673
so part of: AAY24_RS18275
location: 24460..25140
location: region:24460-25140:1
so has part: feature:24460-25140:1:exon

WP_046861486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24460-25140:1:exon

AAY24_RS18280
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
gene: trbG
locus tag: AAY24_RS18280
old locus tag: AAY24_18275
so part of: sequence
location: 25137..25976
location: region:25137-25976:1
so has part: feature:25137-25976:1:exon
subclass of: SO_0000010

position:25137:1
position: 25137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25976:1
position: 25976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25137-25976:1:exon

AAY24_RS18280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
gene: trbG
locus tag: AAY24_RS18280
old locus tag: AAY24_18275
inference: COORDINATES: protein motif:HMM:NF015487.2
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbG
translation: MIRTILIAIGLVMATQTASAAKISPRDRTGVELSKAWMTEDIKPRRSADGSVVFQYGATLPTVVCAPLRVCDIALQPGEKVISSPKLGDTVRWKLAPAKSGPEGAEIIHAVVKPTEPGLDTTLMIPTDRRMYHLRLVSTKTDWMPFISFEYPEDHEKAWAEIQVAQAEQQRRESMRKLEVGASRMPVEDLNFEYEIDGESHWRPVRVFDDGSHTYIDLPHKAKHRDAPILLVNDAEQDRLVNYRMHGSRFIVDTLFDQAKLISGVGDNQQKVVIRRAGQ
SIO_010081: AAY24_RS18280
subclass of: SO_0000673
so part of: AAY24_RS18280
location: 25137..25976
location: region:25137-25976:1
so has part: feature:25137-25976:1:exon

WP_046861487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25137-25976:1:exon

AAY24_RS18285
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18285
old locus tag: AAY24_18280
so part of: sequence
location: 25973..26398
location: region:25973-26398:1
so has part: feature:25973-26398:1:exon
subclass of: SO_0000010

position:25973:1
position: 25973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26398:1
position: 26398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25973-26398:1:exon

AAY24_RS18285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18285
old locus tag: AAY24_18280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRVIIGILIAALLGGCQNQMIRDDLAPVKAGAAGSIVADWAQLLQDRYPATTVFEIKGMGKIGTALAKELRSLGYGVADTQDQPTTESVPIEVRSDKLGSKGILVSLIIKDQIISRSYTVSESEAAADSAFSELAAGGKL
SIO_010081: AAY24_RS18285
subclass of: SO_0000673
so part of: AAY24_RS18285
location: 25973..26398
location: region:25973-26398:1
so has part: feature:25973-26398:1:exon

WP_046861488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25973-26398:1:exon

AAY24_RS18290
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18290
old locus tag: AAY24_18285
so part of: sequence
location: 26395..27654
location: region:26395-27654:1
so has part: feature:26395-27654:1:exon
subclass of: SO_0000010

position:26395:1
position: 26395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27654:1
position: 27654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26395-27654:1:exon

AAY24_RS18290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18290
old locus tag: AAY24_18285
inference: COORDINATES: protein motif:HMM:NF015688.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
translation: MKSTEETPEGIALSGTPTGIRRLNKIPLLIIGAAGILIVTVVAYALHQRSQPVTLESVQEDTRREADETSVRALTEGHHGAYIEETTAEIAPQRQRPAKTPKPNSPANPAQTAATAPYAPRPVAAPIRRSAVEDAKERQEAKRLQMLYGAMEAPIGVDFNQKGEAQATPITLTQPPRDNRSQLLGEAIRNALGNQQQETDPNGQADKTAFLQGRQERTPVIYGRDRPVTPWEIRSGTVIPGVLITGINSDLPGNIKGQVSQNVYDTATGKYLLIPQGTQLVGTYDSRVTYGQNRALVVWTRLVYPDGSALELGNMGGTDMAGYAGFEDQVDNHYFRIFGSALLMSVISAGYAIATDDDSQSDNEQSAQQEIAREMSQTSDRILRKNLNLQPTIKIRPGYKFNVFVNKDMRFREPYPAQG
SIO_010081: AAY24_RS18290
subclass of: SO_0000673
so part of: AAY24_RS18290
location: 26395..27654
location: region:26395-27654:1
so has part: feature:26395-27654:1:exon

WP_052761395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26395-27654:1:exon

AAY24_RS18295
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18295
old locus tag: AAY24_18290
so part of: sequence
location: complement(28028..28753)
location: region:28028-28753:-1
so has part: feature:28028-28753:-1:exon
subclass of: SO_0000010

position:28028:-1
position: 28028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28753:-1
position: 28753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28028-28753:-1:exon

AAY24_RS18295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18295
old locus tag: AAY24_18290
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKVTKSSDVFEKPSVQDVIDRLMRVADRSLPFNVDMVGEDGFYLDYAAIEFTDYYHTDGTPSSVGLEVKFTAPVKQLFDTEEEGEELRVIDYCGERVVLHDYEDCHRPENQPMIQGVPFNPRLRDGFDSTPNDDRDPQEVDDWWGRPFIRSYSWADMVESYSDYINRVSRPGLGDFIPKSREEFDADQEARRIQWFESWPTGVRYDVRCLDGGAWDRSTCLSMVGTLEDALDIARSMAME
SIO_010081: AAY24_RS18295
subclass of: SO_0000673
so part of: AAY24_RS18295
location: complement(28028..28753)
location: region:28028-28753:-1
so has part: feature:28028-28753:-1:exon

WP_199930601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28028-28753:-1:exon

AAY24_RS18300
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18300
old locus tag: AAY24_18295
so part of: sequence
location: complement(28795..28968)
location: region:28795-28968:-1
so has part: feature:28795-28968:-1:exon
subclass of: SO_0000010

position:28795:-1
position: 28795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28968:-1
position: 28968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28795-28968:-1:exon

AAY24_RS18300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18300
old locus tag: AAY24_18295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSILKDTVKLTDSVERLNAANMKLQEKVEGIDGRVIRLETRLDTYVEIANRNRLESD
SIO_010081: AAY24_RS18300
subclass of: SO_0000673
so part of: AAY24_RS18300
location: complement(28795..28968)
location: region:28795-28968:-1
so has part: feature:28795-28968:-1:exon

WP_199930602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28795-28968:-1:exon

AAY24_RS18730
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18730
so part of: sequence
location: complement(28989..29297)
location: region:28989-29297:-1
so has part: feature:28989-29297:-1:exon
subclass of: SO_0000010

position:28989:-1
position: 28989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29297:-1
position: 29297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28989-29297:-1:exon

AAY24_RS18730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18730
inference: COORDINATES: protein motif:HMM:NF015947.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MEAQGKIQKWGNSSAIRLPAKVLAAAGFNSDSEVDIQVDDGRVVIQLHERTLEQTFDKLLADEPGAAELLALAKESLSRAITLTDETTERCNALIEKLGEQS
SIO_010081: AAY24_RS18730
subclass of: SO_0000673
so part of: AAY24_RS18730
location: complement(28989..29297)
location: region:28989-29297:-1
so has part: feature:28989-29297:-1:exon

WP_052761397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28989-29297:-1:exon

AAY24_RS18735
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18735
so part of: sequence
location: complement(29373..30101)
location: region:29373-30101:-1
so has part: feature:29373-30101:-1:exon
subclass of: SO_0000010

position:29373:-1
position: 29373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30101:-1
position: 30101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29373-30101:-1:exon

AAY24_RS18735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18735
inference: COORDINATES: protein motif:HMM:NF014442.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MNKLTNELISLHGKEGLRAEQWFDLMLDDVLAGFGIRLTEIPTEAVREVLFNLSGLYAQEVIREAPFADLLGPVHMELVSRYQQKGSGQFFTPTELCRMIAQMNMQGLRFDKDQARLIRISDPAVGAGGMLLAALDHITATHGPEALAWVSVTGIDIDHRCARMYPVQVLSSLYVNQLGLGELVSYQGNTLGDPAAWQTVCHYSRRDLPEQPTPADHPAIKKAVAEAVTASPSDGLSQLSLF
SIO_010081: AAY24_RS18735
subclass of: SO_0000673
so part of: AAY24_RS18735
location: complement(29373..30101)
location: region:29373-30101:-1
so has part: feature:29373-30101:-1:exon

WP_082117283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29373-30101:-1:exon

AAY24_RS18315
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS18315
old locus tag: AAY24_18310
so part of: sequence
location: complement(30496..31137)
location: region:30496-31137:-1
so has part: feature:30496-31137:-1:exon
subclass of: SO_0000010

position:30496:-1
position: 30496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31137:-1
position: 31137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30496-31137:-1:exon

AAY24_RS18315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS18315
old locus tag: AAY24_18310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020286636.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSSSLDIAPEMRLFDECGHRLYLTADERGRFLEAAAQENREDRIFCHVLHYTGCRPSEALELTTRRVHVDTGEIVFRSLKKRLRDAQGREKRPQFRAVPVPAFLLDQIDLVFDLRRRYQSGKGLDDLLWTMSRSTAWRMVKRVMARARISGPQATAKGLRHGFGIAMLSGPTPLPLNVLRDLMGHSDTKTTEIYLQAIGYEKRHLVMQAWDTR
SIO_010081: AAY24_RS18315
subclass of: SO_0000673
so part of: AAY24_RS18315
location: complement(30496..31137)
location: region:30496-31137:-1
so has part: feature:30496-31137:-1:exon

WP_046861490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30496-31137:-1:exon

AAY24_RS19045
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS19045
so part of: sequence
location: complement(31282..32127)
location: region:31282-32127:-1
so has part: feature:31282-32127:-1:exon
subclass of: SO_0000010

position:31282:-1
position: 31282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32127:-1
position: 32127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31282-32127:-1:exon

AAY24_RS19045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS19045
inference: COORDINATES: protein motif:HMM:NF023605.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NotI family restriction endonuclease
translation: MLISEVFGHGVEDLTDDAQSDRRHKNCRFRGSACTKSSTTDPIGICSLSDGVEAASLCPFRFLESDRIFTDAARLSFGPDASFGVFPEVRILKIPSDQEGGRDRKIGKVDYILGRVESGEITDFAAVEVQAVYFSGREIRTAMNYFLAHGALDIESSDRRPDFRSSAQKRLIPQLQLKVPVFRRWGKKFFVVVDTQFFRSLPSFSSTTQANSELTWLSYPLKKTGSNYTIQEPMIVYSEWDEVQNSLREGSPPEPSEIVHELQTKLTGPQRTRPRILRVNR
SIO_010081: AAY24_RS19045
subclass of: SO_0000673
so part of: AAY24_RS19045
location: complement(31282..32127)
location: region:31282-32127:-1
so has part: feature:31282-32127:-1:exon

WP_082117284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31282-32127:-1:exon

AAY24_RS19050
type: Gene
subclass of: SO_0000704
RO_0002162: 1543721
locus tag: AAY24_RS19050
old locus tag: AAY24_18315
so part of: sequence
location: complement(32147..33304)
location: region:32147-33304:-1
so has part: feature:32147-33304:-1:exon
subclass of: SO_0000010

position:32147:-1
position: 32147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33304:-1
position: 33304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32147-33304:-1:exon

AAY24_RS19050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1543721
locus tag: AAY24_RS19050
old locus tag: AAY24_18315
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011456010.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MDKNHNQPTAIDLFCGAGGLSEGFQQAGFKILAGNDMDVFAGETFQRTHPNAVFIPGPINRVTAPRLLRETGLKKGDLDCLVGGPPCQAFSVYNHKRGLHDQRSSLFRDYLRIVRGLQPKWVVMENVTGIMSAGGGDAVAEITTKLRSLGYHTEMRVLKAEEYGIPQERRRVLFIGNRLGLPIPWPSPTHGPGLRPYTTVWDAIGDLPVVKNGENPPPGPYGADATNSYQKELRGNQTLVYNHSAPRLGSVNLARLKHIPQGGSWRDIPYELLPEGMKRARRSDHTKRYGRLMPKGLASTILTKCDPHWGAFFHPTQDRALTVREAARLQSFPDTYLFSGSRTDQYVQVGNAVPPILGRTVAKSILSLMSEVEYSSQSMLRSASG
SIO_010081: AAY24_RS19050
subclass of: SO_0000673
so part of: AAY24_RS19050
location: complement(32147..33304)
location: region:32147-33304:-1
so has part: feature:32147-33304:-1:exon

WP_046861503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32147-33304:-1:exon