Francisella frigiditurris strain CA97-1460 plasmid pFCD_1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella.
Submitted (17-OCT-2014) Bioscience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87544, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP009655.1.\nSource DNA may be requested from Dr Jeannine Petersen,\nnzp0@cdc.gov.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.2.08; IDBA-UD 1.1.0; Phrap v.\n SPS - 4.24; HGAP v. 2.2.0\nGenome Coverage :: 368.6x; 351.3x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:07:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,850\nCDSs (total) :: 1,795\nGenes (coding) :: 1,782\nCDSs (with protein) :: 1,782\nGenes (RNA) :: 55\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 13\nCDSs (without protein) :: 13\nPseudo Genes (ambiguous residues) :: 0 of 13\nPseudo Genes (frameshifted) :: 5 of 13\nPseudo Genes (incomplete) :: 7 of 13\nPseudo Genes (internal stop) :: 3 of 13\nPseudo Genes (multiple problems) :: 2 of 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Francisella frigiditurris
COORDINATES: protein motif:HMM:NF025742.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF013235.2