Francisella frigiditurris strain CA97-1460 plasmid pFCD_1, complete sequence.
type: Entry
definition: Francisella frigiditurris strain CA97-1460 plasmid pFCD_1, complete sequence.
sequence version: NZ_CP009655.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NZ_CP009655.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03107515
keyword: RefSeq
source: Francisella frigiditurris
organism: Francisella frigiditurris
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP009655.1.\nSource DNA may be requested from Dr Jeannine Petersen,\nnzp0@cdc.gov.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.2.08; IDBA-UD 1.1.0; Phrap v.\n SPS - 4.24; HGAP v. 2.2.0\nGenome Coverage :: 368.6x; 351.3x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:07:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,850\nCDSs (total) :: 1,795\nGenes (coding) :: 1,782\nCDSs (with protein) :: 1,782\nGenes (RNA) :: 55\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 13\nCDSs (without protein) :: 13\nPseudo Genes (ambiguous residues) :: 0 of 13\nPseudo Genes (frameshifted) :: 5 of 13\nPseudo Genes (incomplete) :: 7 of 13\nPseudo Genes (internal stop) :: 3 of 13\nPseudo Genes (multiple problems) :: 2 of 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6175
topology: circular
so has quality: SO_0000988
location: 1..6175
location: region:1-6175:1
RO_0002162: 1542390

NZ_CP009655
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03107515
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kuske, C.R.
author: Challacombe, J.F.
author: Daligault, H.E.
author: Davenport, K.W.
author: Johnson, S.L.
author: Siddaramappa, S.
author: Petersen, J.M.
journal: Submitted (17-OCT-2014) Bioscience, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87544, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6175:1
position: 6175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6175:1:source
so part of: sequence
organism: Francisella frigiditurris
mol type: genomic DNA
strain: CA97-1460
isolation source: Air conditioning system
type material: type strain of Francisella frigiditurris
plasmid: pFCD_1
country: USA: CA
collection date: 1997

1542390
type: Taxonomy
SIO_000068: taxonomy

KX01_RS09210
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09210
old locus tag: KX01_1862
so part of: sequence
location: complement(32..322)
location: region:32-322:-1
so has part: feature:32-322:-1:exon
subclass of: SO_0000010

position:32:-1
position: 32
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:322:-1
position: 322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32-322:-1:exon

KX01_RS09210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09210
old locus tag: KX01_1862
inference: COORDINATES: protein motif:HMM:NF025742.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MSKNKLINIAKNIKDEDINFDDIPELTNEDIKKSIPLYEAPEILELLDSQKKETKEKITIRLKSSTLETFRGLGKGYQTKISDILDNIAKNIKKHS
SIO_010081: KX01_RS09210
subclass of: SO_0000673
so part of: KX01_RS09210
location: complement(32..322)
location: region:32-322:-1
so has part: feature:32-322:-1:exon

WP_071664807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32-322:-1:exon

KX01_RS09215
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09215
old locus tag: KX01_1863
so part of: sequence
location: complement(319..594)
location: region:319-594:-1
so has part: feature:319-594:-1:exon
subclass of: SO_0000010

position:319:-1
position: 319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594:-1
position: 594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319-594:-1:exon

KX01_RS09215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09215
old locus tag: KX01_1863
inference: COORDINATES: protein motif:HMM:NF016268.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MLEFEWDNKKNKSNIEKHKLPFELAKYVFECGNFERYIDDKKQYNETRYIGFGELENILFCVSYTIRKNKIRIISFRRARQKELDKVRAKK
SIO_010081: KX01_RS09215
subclass of: SO_0000673
so part of: KX01_RS09215
location: complement(319..594)
location: region:319-594:-1
so has part: feature:319-594:-1:exon

WP_071664808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:319-594:-1:exon

KX01_RS09220
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09220
old locus tag: KX01_1864
so part of: sequence
location: complement(1300..1980)
location: region:1300-1980:-1
so has part: feature:1300-1980:-1:exon
subclass of: SO_0000010

position:1300:-1
position: 1300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1980:-1
position: 1980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1300-1980:-1:exon

KX01_RS09220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09220
old locus tag: KX01_1864
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: winged helix-turn-helix transcriptional regulator
translation: MKTKQELIELGKITQQKILSYLAEFKYSTPKTLEKALNINYKTLTGALKRYEKQELITVIEIQAPKTKVVGISWQGLAELGIIDQTKIFHESRFNERTLIHWLQCQNYAILSRNKGLKCYPAPAQKFASKGRGKTDLIEERDSFSIGIEIERTAKTLNRYAEVWGGHVQAIQNKEIDGVKYVLTTKRAEVVEKIFNKAKFVLTKDKRKIDFEPFKNRFKFIINHDL
SIO_010081: KX01_RS09220
subclass of: SO_0000673
so part of: KX01_RS09220
location: complement(1300..1980)
location: region:1300-1980:-1
so has part: feature:1300-1980:-1:exon

WP_071664809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1300-1980:-1:exon

KX01_RS09225
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09225
old locus tag: KX01_1865
so part of: sequence
location: complement(1970..3826)
location: region:1970-3826:-1
so has part: feature:1970-3826:-1:exon
subclass of: SO_0000010

position:1970:-1
position: 1970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3826:-1
position: 3826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1970-3826:-1:exon

KX01_RS09225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09225
old locus tag: KX01_1865
inference: COORDINATES: protein motif:HMM:NF014044.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF87 domain-containing protein
translation: MFFNFNPILNLIIDYLYPYAFDIFSLSKCIFVAVIFSAMYIVSKSAYKSIIKENSPLPLKNSLIIRTIYYGFHVVAAWYVYSFLVTFSIYGLAYLLDRLHVFPIDKFIPCLVVAAGSTVITLILEAFVLNRLIQQKIINPLNQISNAYAYKKSGKKEYNPDKKRTHVGEYNPRKYFKQGKLFFGLNEFKQPVYADLKASLDGHICIAGGSGSGKGVETRILLSQFIQYGLCNIIFDVKPDKYLFNLCSEECRRANKKMYVIDIDVREPQIQLFGGINQIDFETIVKSAMELEPQKQTNARVYAQNTEKALEKISDKIYQKGMTPKEIINACYQYDTDLLAQNIDLESLLRNLSRYKIFNSKEAPTIQEILEENAVFYIRAVSAKENMASSLILRLLFQTITKETQYNDRYSCIFLDEFKFIMTTSVINQLATIRDFNTTLMFNFQSFTNFETSPNAAMNKKAYGKELLDNSHIFALGNSSDIETIEIVQKKGGQTTYDRAFELEEGSLGGASVTSADRRYTKHVDYKLTQSEISNGAKNTMILLAPALFKDREYEQISTHYIPTNNYSFAISGTHKEPYIPNKTTNEQQEAKIEPKREEIQENESIEVSKKDLFGDED
SIO_010081: KX01_RS09225
subclass of: SO_0000673
so part of: KX01_RS09225
location: complement(1970..3826)
location: region:1970-3826:-1
so has part: feature:1970-3826:-1:exon

WP_071664810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1970-3826:-1:exon

KX01_RS09230
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09230
old locus tag: KX01_1866
so part of: sequence
location: complement(3829..4380)
location: region:3829-4380:-1
so has part: feature:3829-4380:-1:exon
subclass of: SO_0000010

position:3829:-1
position: 3829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4380:-1
position: 4380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3829-4380:-1:exon

KX01_RS09230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09230
old locus tag: KX01_1866
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFFICKLESHRIEGDNGLILHVKNAKKDDDVSQYKNKQRIYSLLNCGEDMESYRTIKVFASEELANEELETMKKEDPKHWQGWEVMEYGQELKDTVSTFMNTFKFQMYISKAYDSNHQPTGDYMMMHPLGFHEMIIQYEEVKKELERIATEQEEKLKEQEQEPKKETKSNLLNKIKNIFNKGA
SIO_010081: KX01_RS09230
subclass of: SO_0000673
so part of: KX01_RS09230
location: complement(3829..4380)
location: region:3829-4380:-1
so has part: feature:3829-4380:-1:exon

WP_071664811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3829-4380:-1:exon

KX01_RS09235
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09235
old locus tag: KX01_1867
so part of: sequence
location: complement(4380..4655)
location: region:4380-4655:-1
so has part: feature:4380-4655:-1:exon
subclass of: SO_0000010

position:4655:-1
position: 4655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4380-4655:-1:exon

KX01_RS09235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09235
old locus tag: KX01_1867
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKINVNEEMIGFETILELIEMFSKIINKNLPDKAQEDIKEIVAWCGSVSDKKDIVFISKNLKKTRQKLQDYFHKKDLKEIFERSKQLQEIK
SIO_010081: KX01_RS09235
subclass of: SO_0000673
so part of: KX01_RS09235
location: complement(4380..4655)
location: region:4380-4655:-1
so has part: feature:4380-4655:-1:exon

WP_071664812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4380-4655:-1:exon

KX01_RS09240
type: Gene
subclass of: SO_0000704
RO_0002162: 1542390
locus tag: KX01_RS09240
old locus tag: KX01_1868
so part of: sequence
location: complement(4784..5605)
location: region:4784-5605:-1
so has part: feature:4784-5605:-1:exon
subclass of: SO_0000010

position:4784:-1
position: 4784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5605:-1
position: 5605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4784-5605:-1:exon

KX01_RS09240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1542390
locus tag: KX01_RS09240
old locus tag: KX01_1868
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNKEIILQKKNDFVNALYKLSLDEMRIFNYAIAKTNPFKEHNNMMPISINDLAKFYNLDNKSDKYKQFNEALNHLFNRQITYTIEDEEHGTMWVTARLIVNKIENKKGLIGLKFSDEINQLIKCDRDFLEYKLKQTIGITSPNSVRIYEMLLYSLKTTPNKALNKEYLIKEIKQKLGLTDKYPRFCDFRKYVLEVAKKQINKHTDIKIDYEVRKLGRTPESIIFTAKFKPNAERFELEQEEENTPIQQLEELPTQDIEVSKKWLETIKTGLKK
SIO_010081: KX01_RS09240
subclass of: SO_0000673
so part of: KX01_RS09240
location: complement(4784..5605)
location: region:4784-5605:-1
so has part: feature:4784-5605:-1:exon

WP_198021121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4784-5605:-1:exon