Clostridium novyi strain 150557 plasmid pCN2, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete genome sequence of Clostridium novyi type B isolated from swine liver
Submitted (11-MAY-2018) College of Veterinary Medicine, Chonbuk National University, 79 Gobong-ro, Iksan, Jeonbuk 54596, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP029460.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT HGAP 3.0 v. v 2.3\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:21:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,428\nCDSs (total) :: 2,306\nGenes (coding) :: 2,268\nCDSs (with protein) :: 2,268\nGenes (RNA) :: 122\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 5\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 25 of 38\nPseudo Genes (incomplete) :: 15 of 38\nPseudo Genes (internal stop) :: 13 of 38\nPseudo Genes (multiple problems) :: 14 of 38\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003377843.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004445075.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025164.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
anti sigma factor C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: similar to AA sequence:RefSeq:WP_019279219.1
COORDINATES: similar to AA sequence:RefSeq:WP_004445054.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003372241.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003377890.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721025.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013726775.1
COORDINATES: similar to AA sequence:RefSeq:WP_013720862.1
COORDINATES: similar to AA sequence:RefSeq:WP_003380896.1
COORDINATES: similar to AA sequence:RefSeq:WP_019279201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726724.1
COORDINATES: similar to AA sequence:RefSeq:WP_019279113.1
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013726728.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726729.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013726782.1
COORDINATES: similar to AA sequence:RefSeq:WP_003358851.1
GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013726733.1
phosphatidylinositol-specific phospholipase C
COORDINATES: similar to AA sequence:RefSeq:WP_003365538.1
COORDINATES: similar to AA sequence:RefSeq:WP_003380047.1
GO:0005576 - extracellular region [Evidence IEA]
aerolysin family beta-barrel pore-forming toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003380042.1
COORDINATES: protein motif:HMM:NF028300.2
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019279344.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721019.1
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015978945.1
COORDINATES: similar to AA sequence:RefSeq:WP_015978942.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015978941.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019278492.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726803.1
COORDINATES: similar to AA sequence:RefSeq:WP_004445089.1
COORDINATES: similar to AA sequence:RefSeq:WP_004445087.1
COORDINATES: similar to AA sequence:RefSeq:WP_004445084.1