Clostridium novyi strain 150557 plasmid pCN1, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete genome sequence of Clostridium novyi type B isolated from swine liver
Submitted (11-MAY-2018) College of Veterinary Medicine, Chonbuk National University, 79 Gobong-ro, Iksan, Jeonbuk 54596, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP029459.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT HGAP 3.0 v. v 2.3\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:21:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,428\nCDSs (total) :: 2,306\nGenes (coding) :: 2,268\nCDSs (with protein) :: 2,268\nGenes (RNA) :: 122\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 5\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 25 of 38\nPseudo Genes (incomplete) :: 15 of 38\nPseudo Genes (internal stop) :: 13 of 38\nPseudo Genes (multiple problems) :: 14 of 38\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013056.2
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleobase:cation symporter-2 family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013786997.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014969002.1
COORDINATES: protein motif:HMM:NF024921.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015049329.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003378553.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003378554.1
COORDINATES: similar to AA sequence:RefSeq:WP_015958050.1
MogA/MoaB family molybdenum cofactor biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010965293.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003378560.1
GO:0003824 - catalytic activity [Evidence IEA]
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: similar to AA sequence:RefSeq:WP_013720987.1
COORDINATES: similar to AA sequence:RefSeq:WP_000762755.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003366502.1
IS200/IS605 family element RNA-guided endonuclease TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_003377910.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377792.1
COORDINATES: similar to AA sequence:RefSeq:WP_003378571.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721011.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019279346.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726334.1
COORDINATES: protein motif:HMM:NF016526.2
GO:0008233 - peptidase activity [Evidence IEA]
GO:0009372 - quorum sensing [Evidence IEA]
accessory gene regulator B family protein
COORDINATES: protein motif:HMM:NF019468.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_006773528.1
COORDINATES: protein motif:HMM:NF012879.2
COORDINATES: similar to AA sequence:RefSeq:WP_013726770.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721034.1
COORDINATES: protein motif:HMM:NF013661.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012158037.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377758.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: similar to AA sequence:RefSeq:WP_003377769.1
COORDINATES: protein motif:HMM:NF013152.2
COORDINATES: similar to AA sequence:RefSeq:WP_013720978.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377814.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003378570.1
COORDINATES: similar to AA sequence:RefSeq:WP_003163818.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003377780.1
COORDINATES: similar to AA sequence:RefSeq:WP_013726716.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890861.1
COORDINATES: similar to AA sequence:RefSeq:WP_015978956.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019278524.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611940.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006440598.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019278494.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377811.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377812.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721032.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003364954.1
COORDINATES: similar to AA sequence:RefSeq:WP_013725546.1
permease prefix domain 1-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003377816.1
COORDINATES: similar to AA sequence:RefSeq:WP_005215300.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_157140371.1
COORDINATES: similar to AA sequence:RefSeq:WP_157140372.1
COORDINATES: similar to AA sequence:RefSeq:WP_003469463.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377834.1
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_003377843.1
COORDINATES: similar to AA sequence:RefSeq:WP_008678471.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003377847.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003377849.1
COORDINATES: similar to AA sequence:RefSeq:WP_017416127.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006522155.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003377855.1
COORDINATES: similar to AA sequence:RefSeq:WP_003440871.1
COORDINATES: similar to AA sequence:RefSeq:WP_010236991.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003377857.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377858.1
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: similar to AA sequence:RefSeq:WP_006806686.1
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016209031.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003359906.1
YgeY family selenium metabolism-linked hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007934967.1
COORDINATES: similar to AA sequence:RefSeq:WP_019279350.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377828.1
COORDINATES: similar to AA sequence:RefSeq:WP_013720967.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377872.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
GO:0006801 - superoxide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019279433.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377878.1
voltage-gated chloride channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003377887.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377889.1
COORDINATES: similar to AA sequence:RefSeq:WP_003377890.1
COORDINATES: similar to AA sequence:RefSeq:WP_013720889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013239690.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003378536.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003378538.1
COORDINATES: protein motif:HMM:NF022781.2
COORDINATES: similar to AA sequence:RefSeq:WP_003403983.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003378551.1