Sphingomonas morindae strain NBD5 plasmid p2, complete sequence.
type: Entry
definition: Sphingomonas morindae strain NBD5 plasmid p2, complete sequence.
sequence version: NZ_CP084933.1
sequence date: 2023-07-26
sequence: sequence
division: CON
label: NZ_CP084933.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN22218079
keyword: RefSeq
source: Sphingomonas morindae
organism: Sphingomonas morindae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.
reference: 1
references: 35622580
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP084933.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v3.6.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 360.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/26/2023 04:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,996\nCDSs (total) :: 3,933\nGenes (coding) :: 3,896\nCDSs (with protein) :: 3,896\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 7 of 37\nPseudo Genes (incomplete) :: 30 of 37\nPseudo Genes (internal stop) :: 3 of 37\nPseudo Genes (multiple problems) :: 3 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 32839
topology: circular
so has quality: SO_0000988
location: 1..32839
location: region:1-32839:1
RO_0002162: 1541170

NZ_CP084933
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN22218079
type: BioSample
SIO_000068: biosample

1
title: Genomic Analysis of Sphingopyxis sp. USTB-05 for Biodegrading Cyanobacterial Hepatotoxins
author: Liu, C.
author: Xu, Q.
author: Zhao, Z.
author: Zhang, H.
author: Liu, X.
author: Yin, C.
author: Liu, Y.
author: Yan, H.
journal: Toxins (Basel) 14 (5), 333 (2022)
pubmed: 35622580
comments: Publication Status: Online-Only

35622580
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Liu, Y.
journal: Submitted (12-OCT-2021) University of Science and Technology Beijing, School of Chemistry and Biological Engineering, 30 Xueyuan Road, Beijing 100083, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32839:1
position: 32839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32839:1:source
so part of: sequence
organism: Sphingomonas morindae
mol type: genomic DNA
strain: NBD5
isolation source: Noni
type material: type strain of Sphingomonas morindae
plasmid: p2
country: China: Hainan
collection date: 2015

1541170
type: Taxonomy
SIO_000068: taxonomy

LHA26_RS19815
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19815
old locus tag: LHA26_19855
so part of: sequence
location: complement(128..436)
location: region:128-436:-1
so has part: feature:128-436:-1:exon
subclass of: SO_0000010

position:128:-1
position: 128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:436:-1
position: 436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128-436:-1:exon

LHA26_RS19815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19815
old locus tag: LHA26_19855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010189216.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MMNQLVSGLAPMHPGELLREDILPALNKPKAEIARLIEVSRQTLYDILAEKQDITPTMALRVGKLTGTTPEMWVNMQRNYDLRVQAVKDADIIARIPTLEAA
SIO_010081: LHA26_RS19815
subclass of: SO_0000673
so part of: LHA26_RS19815
location: complement(128..436)
location: region:128-436:-1
so has part: feature:128-436:-1:exon

WP_252169042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:128-436:-1:exon

LHA26_RS19820
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19820
old locus tag: LHA26_19860
so part of: sequence
location: complement(558..833)
location: region:558-833:-1
so has part: feature:558-833:-1:exon
subclass of: SO_0000010

position:558:-1
position: 558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:833:-1
position: 833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:558-833:-1:exon

LHA26_RS19820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19820
old locus tag: LHA26_19860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010189218.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIKTYASKALEAFATERDGSKLPVQNHSRVRRILLALDAATKPEDMHLPGFRFHGLNTNPKRYAVDASGNYRITWAWDEGDAIDVNIEDYH
SIO_010081: LHA26_RS19820
subclass of: SO_0000673
so part of: LHA26_RS19820
location: complement(558..833)
location: region:558-833:-1
so has part: feature:558-833:-1:exon

WP_252169043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:558-833:-1:exon

LHA26_RS19825
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
gene: mobQ
locus tag: LHA26_RS19825
old locus tag: LHA26_19865
so part of: sequence
location: complement(909..1955)
location: region:909-1955:-1
so has part: feature:909-1955:-1:exon
subclass of: SO_0000010

position:909:-1
position: 909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1955:-1
position: 1955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:909-1955:-1:exon

LHA26_RS19825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
gene: mobQ
locus tag: LHA26_RS19825
old locus tag: LHA26_19865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213420.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLAVKSVSRSTGRSAVAAVAYRAGVCLKNERDGLVHDYTRRGGVEDAFIVAPEGAEWAQDRSALWNAAEAAEKRKDAKVAREYELALPAELDRDQRRNLVRGFAEELRDRYGVAVDAAIHAPHDYGDDRNFHAHVMTTTRVVEADGLGAKTRQLDVRTSASAEVEAIRESWAGRVNEALEQALVPERVDHRSYARQGVEMEPTVKMGHASAAIERRAQREQEAAGEERHAVTPRGRMNEAIEQKRGLGAYIERGREWLHEVDQWARDHVELAAQRMSDLVRGAAQAMRAGLQARVGDGFEDLPALDRSPRREQAPGLDMDQPQIERDRQRERQRDLDHDIGFGR
SIO_010081: LHA26_RS19825
subclass of: SO_0000673
so part of: LHA26_RS19825
location: complement(909..1955)
location: region:909-1955:-1
so has part: feature:909-1955:-1:exon

WP_252169044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:909-1955:-1:exon

LHA26_RS19830
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
gene: traD
locus tag: LHA26_RS19830
old locus tag: LHA26_19870
so part of: sequence
location: 2192..2461
location: region:2192-2461:1
so has part: feature:2192-2461:1:exon
subclass of: SO_0000010

position:2192:1
position: 2192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2461:1
position: 2461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2192-2461:1:exon

LHA26_RS19830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
gene: traD
locus tag: LHA26_RS19830
old locus tag: LHA26_19870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019054706.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MAAPTPEAVELAKKRVAQAKARLDALNARIAAEGRRLDTRRKIILGGLLIDAATKDQRFANVVGSLMERINRDQDRKAFDGWTLPVEEN
SIO_010081: LHA26_RS19830
subclass of: SO_0000673
so part of: LHA26_RS19830
location: 2192..2461
location: region:2192-2461:1
so has part: feature:2192-2461:1:exon

WP_252169045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2192-2461:1:exon

LHA26_RS19835
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19835
old locus tag: LHA26_19875
so part of: sequence
location: 2461..3381
location: region:2461-3381:1
so has part: feature:2461-3381:1:exon
subclass of: SO_0000010

position:3381:1
position: 3381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2461-3381:1:exon

LHA26_RS19835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19835
old locus tag: LHA26_19875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRDRDDEPRRLLDQARRIQGQGRGGRNRGGDRADTPAGKFDMSDWNTPTGAPAEPPADPVPAPSPAARARDQADTAKAFSMFSAIDTGIQRLLSNFGMIRDLVADVRASVADAAAKDAKRAEEEAARNKRIADRLIDPDQLARHAEAGARQGAREALDSSVREWTRRLDDDASARHLIVKQMAFDQTERRNDENRRRRRDRWWNVGLLMLALLIPLATGYGYFLGRTAGHAAGYAQARDEVAAANWANTANGRLARQLDQASEQTIPAIAACPKDYGWKREKRDGAYWCFGANSDGRSYTGWLLP
SIO_010081: LHA26_RS19835
subclass of: SO_0000673
so part of: LHA26_RS19835
location: 2461..3381
location: region:2461-3381:1
so has part: feature:2461-3381:1:exon

WP_252169046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2461-3381:1:exon

LHA26_RS19840
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19840
old locus tag: LHA26_19880
so part of: sequence
location: 3378..3548
location: region:3378-3548:1
so has part: feature:3378-3548:1:exon
subclass of: SO_0000010

position:3378:1
position: 3378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3548:1
position: 3548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3378-3548:1:exon

LHA26_RS19840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19840
old locus tag: LHA26_19880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIHIDYRVAPRTDREHAGSWGLWSDRRQCWLGIVYPSERQAIAMLAYLRRTFDARK
SIO_010081: LHA26_RS19840
subclass of: SO_0000673
so part of: LHA26_RS19840
location: 3378..3548
location: region:3378-3548:1
so has part: feature:3378-3548:1:exon

WP_252169047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3378-3548:1:exon

LHA26_RS19845
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19845
old locus tag: LHA26_19885
so part of: sequence
location: 3545..4507
location: region:3545-4507:1
so has part: feature:3545-4507:1:exon
subclass of: SO_0000010

position:3545:1
position: 3545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4507:1
position: 4507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3545-4507:1:exon

LHA26_RS19845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19845
old locus tag: LHA26_19885
EC number: 3.1.3.-
inference: COORDINATES: protein motif:HMM:TIGR01549.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD family hydrolase
translation: MTWTHPHFRTPAEQAGYEAVDAELADRIPRRDHVPEGERDGWRQNMLPFGERWSGIRELEACLAFREPSDPESAVVADALVRAGTVTDDLYDRLLAVADRRYTEHLHYPSPPITRAVAFDAFGTLVRIGKRHRPYERLVARARQRAAELPSPMTAAIGLDDYAAMLGLSPPHVERIGLEEELASVTPYPDALETLRRVKAHGVTVVVASNLAEPYAAPLKALLGDWVDVWHFSFAVGATKPQRFFYAALTARLGIEPHELLMVGDSWHADVEGAVKAGARAQWLDRTGRAAYVRRHVAVRSLADVGWILRTAHPGEPAQA
SIO_010081: LHA26_RS19845
subclass of: SO_0000673
so part of: LHA26_RS19845
location: 3545..4507
location: region:3545-4507:1
so has part: feature:3545-4507:1:exon

WP_252169048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3545-4507:1:exon

LHA26_RS19850
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19850
old locus tag: LHA26_19890
so part of: sequence
location: 4504..4944
location: region:4504-4944:1
so has part: feature:4504-4944:1:exon
subclass of: SO_0000010

position:4504:1
position: 4504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4944:1
position: 4944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4504-4944:1:exon

LHA26_RS19850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19850
old locus tag: LHA26_19890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDPMPEDRMDAPDRLRVQALVQVNLALRDEARPVPPDKKRWVYGFNPQGEGHGFPELWVPRPLMFWSCVLRGGWEEGPEQLNDPGLSLAPWPNAEQAIRAYLQAPKNPAGASSTAGQVRSDDMTGGVIPQRTTSASTSRFIVTCA
SIO_010081: LHA26_RS19850
subclass of: SO_0000673
so part of: LHA26_RS19850
location: 4504..4944
location: region:4504-4944:1
so has part: feature:4504-4944:1:exon

WP_252169049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4504-4944:1:exon

LHA26_RS19855
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19855
old locus tag: LHA26_19895
so part of: sequence
location: 5425..5649
location: region:5425-5649:1
so has part: feature:5425-5649:1:exon
subclass of: SO_0000010

position:5425:1
position: 5425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5649:1
position: 5649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5425-5649:1:exon

LHA26_RS19855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19855
old locus tag: LHA26_19895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMMVRMMAMSVLAMFARMAGMASRSGCMMTGLLVIAFLMMRGGLAVMTGSMVMMLCRDAMVLCALMLYHRYSPA
SIO_010081: LHA26_RS19855
subclass of: SO_0000673
so part of: LHA26_RS19855
location: 5425..5649
location: region:5425-5649:1
so has part: feature:5425-5649:1:exon

WP_252169050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5425-5649:1:exon

LHA26_RS19860
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19860
old locus tag: LHA26_19900
so part of: sequence
location: complement(5849..6667)
location: region:5849-6667:-1
so has part: feature:5849-6667:-1:exon
subclass of: SO_0000010

position:5849:-1
position: 5849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6667:-1
position: 6667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5849-6667:-1:exon

LHA26_RS19860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19860
old locus tag: LHA26_19900
inference: COORDINATES: protein motif:HMM:NF023218.2
GO function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyl hydrolase
translation: MTLTRRSLLARGGAALASSLADAPTFALPDHATGKKGLAGAAPVASGLRTDWYYDWGVHRAGKGVPDADPSIRFVPMIWGLNGNTDAALAKMRGTRLPVLFGFNEPDHHDQSNLRVEQALDAWPNLQGIAADLVSPSCAQPHQQWMQRFVEGAERRGLHFDSVGFHHYGSADPHDLIGLLHHVHEMYKRPIWVTEFGCVDWSAHGERKNRYTERDAVRFIETVCPFMERTPWIRGYAWYPWGKPGGGGPLSASAFFQPDGSLTDAGHAYAAV
SIO_010081: LHA26_RS19860
subclass of: SO_0000673
so part of: LHA26_RS19860
location: complement(5849..6667)
location: region:5849-6667:-1
so has part: feature:5849-6667:-1:exon

WP_252169051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5849-6667:-1:exon

LHA26_RS19865
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19865
old locus tag: LHA26_19905
so part of: sequence
location: complement(6732..7055)
location: region:6732-7055:-1
so has part: feature:6732-7055:-1:exon
subclass of: SO_0000010

position:6732:-1
position: 6732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7055:-1
position: 7055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6732-7055:-1:exon

LHA26_RS19865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19865
old locus tag: LHA26_19905
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTFRTTIIAAIVGATALGVTTADAQSWGYDTDMANRAYRSADERAFQARRDQHAADAAAYWGDYAAADAYAHAADVRRTQAWRDARFAHHENNVARWDYWHGGWGY
SIO_010081: LHA26_RS19865
subclass of: SO_0000673
so part of: LHA26_RS19865
location: complement(6732..7055)
location: region:6732-7055:-1
so has part: feature:6732-7055:-1:exon

WP_252169052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6732-7055:-1:exon

LHA26_RS19870
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19870
old locus tag: LHA26_19910
so part of: sequence
location: 7291..7884
location: region:7291-7884:1
so has part: feature:7291-7884:1:exon
subclass of: SO_0000010

position:7291:1
position: 7291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7884:1
position: 7884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7291-7884:1:exon

LHA26_RS19870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19870
old locus tag: LHA26_19910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007683474.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKGPYLIGYARVSKGDEQSNVAQRRALDAAGCKRVFEETASGGRWDRPKLQEMIEQLRDGDVVVVWKLDRLSRSLKDLLHIMDRIETAGAGFRSLTEAIDTTTAAGRMMMQMVGSFAEFERAMIRERTSAGLAQARAEGRIGGRRRKLGEKQRREIAESVISGRKSGAEMARLYHVSEPTVSRIVAAHRQTVELPA
SIO_010081: LHA26_RS19870
subclass of: SO_0000673
so part of: LHA26_RS19870
location: 7291..7884
location: region:7291-7884:1
so has part: feature:7291-7884:1:exon

WP_252169053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7291-7884:1:exon

LHA26_RS19875
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19875
old locus tag: LHA26_19915
so part of: sequence
location: 7881..9242
location: region:7881-9242:1
so has part: feature:7881-9242:1:exon
subclass of: SO_0000010

position:7881:1
position: 7881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9242:1
position: 9242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7881-9242:1:exon

LHA26_RS19875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19875
old locus tag: LHA26_19915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007683476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRGHDLTELMKFATRPEWADDLHDALDDHLGPALTQFDIDSDELPGIIGEHWVMTLWGCAFEDLATRVFEPDGRNVVDEYLKRRGWNEAGPNKIYMRALKASVMSVYEVSAIEPGVGFLARDLIRGGDPVQVRERSASKTLGPWDRIGARILSVSGHRVLAGGLLLFTAEATSALLEALRMGQGKRGARAKLAIGDDQLRNLAPLISMVWLFDILPRMLEPATIPTLHNADGEEVVFHRVRFPFARGTTQALVAERLDSVSVLQRETAHFWNWLGTKPKPGKKGMGQMAWGVTMEDGTPVLGNLELKGRALTLSVTSAERAERGVALITQTLGDMVGAPLTEIETVEQATAARQEGRTSSEPAPDIPVEVATPLVHGMLDRQYRTLLDEPVPMLGDKTPRQCARSKAGRAQLAAWLKHLENLSGRQIDADDPMATYDFAWMWQELGIEELRR
SIO_010081: LHA26_RS19875
subclass of: SO_0000673
so part of: LHA26_RS19875
location: 7881..9242
location: region:7881-9242:1
so has part: feature:7881-9242:1:exon

WP_252169054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7881-9242:1:exon

LHA26_RS19880
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19880
old locus tag: LHA26_19920
so part of: sequence
location: complement(9342..9860)
location: region:9342-9860:-1
so has part: feature:9342-9860:-1:exon
subclass of: SO_0000010

position:9342:-1
position: 9342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9860:-1
position: 9860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9860:-1:exon

LHA26_RS19880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19880
old locus tag: LHA26_19920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEIVEKSLSSICQYEILVPSGYDAVRGKPLEGGEITFYRPDQPPEPPPRLTAADQVGAWPVLEGYVTRGTWPIYTAYGQMFVALMRPSNSRSSQDTAIVIFSSKLGLTPAKILASVRGSYSSVSVMPNIHGTGCGFALTGHGSGGSLEEVSFWMDGQTEDDLATQFATPLK
SIO_010081: LHA26_RS19880
subclass of: SO_0000673
so part of: LHA26_RS19880
location: complement(9342..9860)
location: region:9342-9860:-1
so has part: feature:9342-9860:-1:exon

WP_252169055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9860:-1:exon

LHA26_RS19885
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19885
old locus tag: LHA26_19925
pseudo: true
so part of: sequence
location: <10266..10601
location: region:10266-10601:1
so has part: feature:10266-10601:1:exon
subclass of: SO_0000010

position:10266:1
position: 10266
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:10601:1
position: 10601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10266-10601:1:exon

LHA26_RS19885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19885
old locus tag: LHA26_19925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017501680.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: LHA26_RS19885
subclass of: SO_0000673
so part of: LHA26_RS19885
location: <10266..10601
location: region:10266-10601:1
so has part: feature:10266-10601:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10266-10601:1:exon

LHA26_RS19890
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19890
old locus tag: LHA26_19930
so part of: sequence
location: 11568..12440
location: region:11568-12440:1
so has part: feature:11568-12440:1:exon
subclass of: SO_0000010

position:11568:1
position: 11568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12440:1
position: 12440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11568-12440:1:exon

LHA26_RS19890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19890
old locus tag: LHA26_19930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010339216.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MTKPAPTEAALTLAQRGRGNPFDPANYGEIVKPGELVDIVELTPLTLADRRIYNLLIANAWERIGEPVIHRIAKSALKGTHQGNERIESSLLRLMGTIAIVTIRKAGKSYKRRVQLLGPSDESLEKDGFLHYRIPEELIEILRNSEVYARLKTQVMYCFESKYALCLYEMIERRIGLEYKQSEELTIAELRGLLNVPEGKLERFADLNKYCLKVAQDEINKLCPFAVYFNPIKKGRKVERVEMVWLSKTSSGRRDAQDLIDQHSIVRRAKLRGIAEMPVLVDFSALAAER
SIO_010081: LHA26_RS19890
subclass of: SO_0000673
so part of: LHA26_RS19890
location: 11568..12440
location: region:11568-12440:1
so has part: feature:11568-12440:1:exon

WP_252169056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11568-12440:1:exon

LHA26_RS19895
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19895
old locus tag: LHA26_19935
so part of: sequence
location: complement(12497..12805)
location: region:12497-12805:-1
so has part: feature:12497-12805:-1:exon
subclass of: SO_0000010

position:12497:-1
position: 12497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12805:-1
position: 12805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12497-12805:-1:exon

LHA26_RS19895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19895
old locus tag: LHA26_19935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015460617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYIKIISEWVLMAIARKPNSKPKPPIDEAAADAFIAGAAKPETAPLAADEAGQGAEPRKSPVMLRFDRALLAKVDAAARRRGISRSAWIQFTVSRALDAGEG
SIO_010081: LHA26_RS19895
subclass of: SO_0000673
so part of: LHA26_RS19895
location: complement(12497..12805)
location: region:12497-12805:-1
so has part: feature:12497-12805:-1:exon

WP_252169057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12497-12805:-1:exon

LHA26_RS19900
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19900
old locus tag: LHA26_19940
so part of: sequence
location: complement(12790..13431)
location: region:12790-13431:-1
so has part: feature:12790-13431:-1:exon
subclass of: SO_0000010

position:12790:-1
position: 12790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13431:-1
position: 13431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12790-13431:-1:exon

LHA26_RS19900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19900
old locus tag: LHA26_19940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007406350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILAVGNTKGGVGKTTLAVNLAVALATAGRDLLLVDGDEQGTALTFTQLRAERRGEAGYTAVALTGAALRSQVRQLASKYDDIIIDVGGRDTGSLRAALTVADTLLVPVQPRSFDVWALDQVSALVAEAREINEGLRAVAVLNGADAQGADNETALEMIGDIEGIEVLTTSIVRRKAFPNAAAEGRAVIEQSPRDPKAIDELTALIGAVCISR
SIO_010081: LHA26_RS19900
subclass of: SO_0000673
so part of: LHA26_RS19900
location: complement(12790..13431)
location: region:12790-13431:-1
so has part: feature:12790-13431:-1:exon

WP_252169058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12790-13431:-1:exon

LHA26_RS19905
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19905
old locus tag: LHA26_19945
pseudo: true
so part of: sequence
location: complement(<13687..15051)
location: region:13687-15051:-1
so has part: feature:13687-15051:-1:exon
subclass of: SO_0000010

position:13687:-1
position: 13687
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15051:-1
position: 15051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13687-15051:-1:exon

LHA26_RS19905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19905
old locus tag: LHA26_19945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612308.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS481 family transposase
SIO_010081: LHA26_RS19905
subclass of: SO_0000673
so part of: LHA26_RS19905
location: complement(<13687..15051)
location: region:13687-15051:-1
so has part: feature:13687-15051:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13687-15051:-1:exon

LHA26_RS19910
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19910
old locus tag: LHA26_19950
so part of: sequence
location: complement(15069..15713)
location: region:15069-15713:-1
so has part: feature:15069-15713:-1:exon
subclass of: SO_0000010

position:15069:-1
position: 15069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15713:-1
position: 15713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15069-15713:-1:exon

LHA26_RS19910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19910
old locus tag: LHA26_19950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019370852.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYIRVSKSDGSQTLAPQRDALLAAGIDPSRIYEDLASGRHDARPGLTACLKALQPGNTLVIWKLDRLGRDLRHLVLTAEALRERGVGLKVLTGAGAQIDTTSANGRLAFGIFAAFAEFERELIAERTQAGLAAARARGRLGGRPRKMDRATLSMAMTAMSDRGAIAADVARRLGITTTTLYAYVNGDGSPKAPGQALLDGIPFRKEQTQAA
SIO_010081: LHA26_RS19910
subclass of: SO_0000673
so part of: LHA26_RS19910
location: complement(15069..15713)
location: region:15069-15713:-1
so has part: feature:15069-15713:-1:exon

WP_252169059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15069-15713:-1:exon

LHA26_RS19915
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19915
old locus tag: LHA26_19955
so part of: sequence
location: 16076..18148
location: region:16076-18148:1
so has part: feature:16076-18148:1:exon
subclass of: SO_0000010

position:16076:1
position: 16076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18148:1
position: 18148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16076-18148:1:exon

LHA26_RS19915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19915
old locus tag: LHA26_19955
EC number: 3.2.1.23
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007563178.1
GO component: GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO function: GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-galactosidase
translation: MGAFATAVGVLGFSAVATATPTVQLPNTVLYGVAYYDEYTPVDRVDEDARMMQAAGITVVRIAESTWGTLERQPGVFDFSHVDRMLTAMHRHGIKVIVGTPTYAVPTWLARQHPNVLQRPGTYGPRQNMDITDPDYRAACERVIVALIDHVKDHPAVIGYQIDNETKAYGLDTPRVQAAFRAEMQRTWPDLNALNKAWGLDYWSNRINRWEDFPSTSNSINASMNGAFAKFQRSLITDFLTWQSQLVRAHAKPAQFITHNFDYDFAPGYSYGLQSQADHWKAAKAVDVTGVDIYHPSQEKLTGLEIAMFGDLARSIRNGENYLVLETEAQGFPQWTPFPGQLRLQAFSHLASGANMVEYWHWASTSNAIETYWRGLLTQDYKPNPLYDEARTIGADFKRLGPKLVDLKKDNKVAIYVSNTALTAFDAFKINAEGRNITYSDVVHGFYDPLYRRNVEVDFLSPDSTVPLDRYKLIIVPALYAANDAEIARLNDYAKRGGHLLYSFKSGFTDENVKVRYASQPGAIAQAAGVTYQLFTNPNGVTLAGDPFAVGEDANKARWWMEMLTPTTAKVVARYQHPSWPAAAAMTRNDWGKGQVSYVGFMPTEAMAETMLVDEVRRAGVEVPKVRWPQIQRQGRTPDGRQLRYLLNYSAKPATVPVASAGEELLSRKKIAAGEAVTLEPWSLAIIENR
SIO_010081: LHA26_RS19915
subclass of: SO_0000673
so part of: LHA26_RS19915
location: 16076..18148
location: region:16076-18148:1
so has part: feature:16076-18148:1:exon

WP_252169060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16076-18148:1:exon

LHA26_RS19920
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19920
old locus tag: LHA26_19960
pseudo: true
so part of: sequence
location: complement(18244..19213)
location: region:18244-19213:-1
so has part: feature:18244-19213:-1:exon
subclass of: SO_0000010

position:18244:-1
position: 18244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19213:-1
position: 19213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18244-19213:-1:exon

LHA26_RS19920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19920
old locus tag: LHA26_19960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611376.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS630 family transposase
SIO_010081: LHA26_RS19920
subclass of: SO_0000673
so part of: LHA26_RS19920
location: complement(18244..19213)
location: region:18244-19213:-1
so has part: feature:18244-19213:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18244-19213:-1:exon

LHA26_RS19925
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19925
old locus tag: LHA26_19965
so part of: sequence
location: complement(19628..20809)
location: region:19628-20809:-1
so has part: feature:19628-20809:-1:exon
subclass of: SO_0000010

position:19628:-1
position: 19628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20809:-1
position: 20809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19628-20809:-1:exon

LHA26_RS19925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19925
old locus tag: LHA26_19965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006329062.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS91 family transposase
translation: MRPDLEVADIFRRYGPAYRDAHDGHLGRVERRVMSAIELCRTAQLGGHIEACDDCDHSRVAYNSCRNRHCPKCQTTTRERWLAERQADLLPVPYFHVVFTVPAEAAEIAFQNKAVVYAILFDAVAATLKTAAADPRHLGGEIGFLAILHTWGQTLTHHPHIHCLVPGGALAAGNRWLACRPRFFLPVRMLSRLFRRIFLERLDAADLAGTLQFSGALAHLNDATVFAASMRQLRRKDWVVFSKPPFGSPGHVLAYLGRYTHRVAIANSRLVSVDDTAVSFRWRDYRRANAARVMSLSPDEFIRRFLLHTLPDGFHRIRHYGFLANGCRKTRLATIRQLLPPLPAGDESTPVCMTGRRPPFEPTVCPCCGGTLRIISALPALRQGKARPPPDTS
SIO_010081: LHA26_RS19925
subclass of: SO_0000673
so part of: LHA26_RS19925
location: complement(19628..20809)
location: region:19628-20809:-1
so has part: feature:19628-20809:-1:exon

WP_252169035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19628-20809:-1:exon

LHA26_RS19930
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19930
old locus tag: LHA26_19970
pseudo: true
so part of: sequence
location: complement(20819..>21088)
location: region:20819-21088:-1
so has part: feature:20819-21088:-1:exon
subclass of: SO_0000010

position:20819:-1
position: 20819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21088:-1
position: 21088
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20819-21088:-1:exon

LHA26_RS19930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19930
old locus tag: LHA26_19970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011383366.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
SIO_010081: LHA26_RS19930
subclass of: SO_0000673
so part of: LHA26_RS19930
location: complement(20819..>21088)
location: region:20819-21088:-1
so has part: feature:20819-21088:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20819-21088:-1:exon

LHA26_RS19935
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19935
old locus tag: LHA26_19975
so part of: sequence
location: 21147..22370
location: region:21147-22370:1
so has part: feature:21147-22370:1:exon
subclass of: SO_0000010

position:21147:1
position: 21147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22370:1
position: 22370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21147-22370:1:exon

LHA26_RS19935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19935
old locus tag: LHA26_19975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011508718.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MSRRKDPSIPAALLDQLLGGADAAAALQDGRLLDSLKKALAERALNAEMDHHLDHGSQDNNSRNGYGRKTVTTDGGKIEIEIPRDRAGSFDPQLIAKYQRRFPGFDDKIISMYARGMSTREISGHLRELYGIEASADLISTVTDAVLDEVAAWQQRPLDPAYPLVFFDAIRVKIRDEGLVRNKAIHIALGVMANGTKVVLGMWVEQNEGAKFWLRVMNELKNRGVEDIMLAVVDGLRGFPEAITAVFPDAIVQTCIVHLLRNSMEFVSWKDRKALATALKEIYRAVDAKAAEAALTSFEAGPWGQRYPAIAQSWRRVWSEVIPFFGFPDEVRRIVYTTNAIEALNSKLRRAVRTRGHFPSDDAAAKLLFLILNRSEKEWKMPPREWAVAKAQFAVLFGDRFIRAMAA
SIO_010081: LHA26_RS19935
subclass of: SO_0000673
so part of: LHA26_RS19935
location: 21147..22370
location: region:21147-22370:1
so has part: feature:21147-22370:1:exon

WP_252169036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21147-22370:1:exon

LHA26_RS19940
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19940
old locus tag: LHA26_19980
pseudo: true
so part of: sequence
location: complement(<22406..22978)
location: region:22406-22978:-1
so has part: feature:22406-22978:-1:exon
subclass of: SO_0000010

position:22406:-1
position: 22406
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:22978:-1
position: 22978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22406-22978:-1:exon

LHA26_RS19940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19940
old locus tag: LHA26_19980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007674740.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: LHA26_RS19940
subclass of: SO_0000673
so part of: LHA26_RS19940
location: complement(<22406..22978)
location: region:22406-22978:-1
so has part: feature:22406-22978:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22406-22978:-1:exon

LHA26_RS19945
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19945
old locus tag: LHA26_19985
so part of: sequence
location: complement(23275..23970)
location: region:23275-23970:-1
so has part: feature:23275-23970:-1:exon
subclass of: SO_0000010

position:23275:-1
position: 23275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23970:-1
position: 23970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23275-23970:-1:exon

LHA26_RS19945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19945
old locus tag: LHA26_19985
inference: COORDINATES: protein motif:HMM:NF017416.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MAYIEGHARDQALLLPASVEDYVGADNPVRFIDAFVDDLDLGGAGFMRARPKATGRPGYDPADMLKLYLYGYLNRVRSSRRLAAEAARNLELIWLLRGVRPDFRTIADFRRDNRAAFKAVFREFVVLCRKLDLFGRELLAVDGTRLKAVNSRSRNFSRERLATYLASADARLERYLAELDQIDRGEDAAGTDRAEAVATKIAKLREQRQASIALLGQLDVAACNDARSNAQ
SIO_010081: LHA26_RS19945
subclass of: SO_0000673
so part of: LHA26_RS19945
location: complement(23275..23970)
location: region:23275-23970:-1
so has part: feature:23275-23970:-1:exon

WP_252169037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23275-23970:-1:exon

LHA26_RS19950
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19950
old locus tag: LHA26_19990
so part of: sequence
location: complement(24102..25391)
location: region:24102-25391:-1
so has part: feature:24102-25391:-1:exon
subclass of: SO_0000010

position:24102:-1
position: 24102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25391:-1
position: 25391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24102-25391:-1:exon

LHA26_RS19950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19950
old locus tag: LHA26_19990
inference: COORDINATES: protein motif:HMM:NF013799.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkaline phosphatase family protein
translation: MAFPLIRHASALLLALTAPAAFAQPTAGIRDIPGAPQSAIVQSGPTVVYLILDGFRFDYTDRWDLKVLKALRAKGAYAPDGTFPSFPSVSGPNHVALMTGLTPTHSGIVANSFLDTSGKTFVQFGVPESTDASFYRGTPIWERAEKAGIRTAGSIWNGSGIDSHGVRMSHYQEYTGDSSIEGEPQVALFKKWLDLPAPQRPHFFAIDLPQADHAGHRYGPDSAELGAAVREIDREIGEMQEALVSRGIDADLVIVADHGMANIVGDRWIDLDRFADLSHARTVGSYIYPDSEETAQRIYTQLNRASPAFDVYRRKDLPLWLHYADTPLTGDPVVVPRGAYMIRGHDDGKGDALTDKGTHHPWVGSTPEMRSTFVAVGPHIRPRIQIESFRNVDLYPLVSTLLALPAAPSDGTCMIANELVRDRPPCSIR
SIO_010081: LHA26_RS19950
subclass of: SO_0000673
so part of: LHA26_RS19950
location: complement(24102..25391)
location: region:24102-25391:-1
so has part: feature:24102-25391:-1:exon

WP_252169038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24102-25391:-1:exon

LHA26_RS19955
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19955
old locus tag: LHA26_19995
so part of: sequence
location: complement(25396..28242)
location: region:25396-28242:-1
so has part: feature:25396-28242:-1:exon
subclass of: SO_0000010

position:25396:-1
position: 25396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28242:-1
position: 28242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25396-28242:-1:exon

LHA26_RS19955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19955
old locus tag: LHA26_19995
inference: COORDINATES: protein motif:HMM:TIGR01782.1
GO component: GO:0019867 - outer membrane [Evidence IEA]
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MVSLKGMLAAGTMSVCCLAEPALAQSMWFHVGEQAAVSGIPEFARQAKVQIVSPAGLNGVRTQAVNGSYSVDDGLRMLLRGTGLRVTMRSGNVISLGAEPVATPVAVRQVRPSPAPVAPPAQTTAEAAPPEEMNEIIVSGTRRRISPSPQEEKKNSISFVSTVGTEELAKRTDVNVVSALERLPGVVLQRGSFTGQSAYPAIRGFNGWYNSVTLDGGTFYTSTRNQRGTTLDFLPVAVINELVVSKTVTPDMDPNSIGGHIDIRTLRSFDNDGRPETMLNGEGTFYSYHGLHNGNPSYLLNGVIKRTFGPDNNFGFVLAASTHKDRSDEKYNTTTTFLQTNGVDVASGALQTGDYQIHSHGFSLLGKLEARGDNFYGYISGNYFKDDAERDQVRSIVSIAPALVTNAGEGTGNFTGATPRALSNPYFLDRRIWGVRGGLEYQTNENSKIVANASYLNTSFYEQLWTSGNIIGPAASGSYNVNSSQAGVSLTGPASLNDPIQWIQAGGTTATQTKWPLPTTIVTGRLEYRSNNFDFSHGFGYDFGVDFRQMWRQLKSFNVNYTLPTGQTITLNQVLDPDAAFNGSDPSSAVFVNQDAYWNLVSKLGSQTIVDAPTSNYKLNENVTAPFAAVYYTTDRFRILAGVRYNITHFTDRVSTITNGVVAPFFNKKTYPYLLPNVQGYYNLTDSLRLRAAYTETTALQNYNDFAQGITTNYDGKGNLVTQGSNPNIKPRRSYNEDASIEYYGRRGYVSLGYFHKTVVDESQGVTTFVYNTAGQITAQIGTPLNGGGEHSQGLEVEGQWRDFSRLSPFLKGVDLAINGAWFDSDTEFLTGNNFARRVNALRQQPKWVANLIINYVTGPFNASAVVTSRGRAFSGFNANPALDVYIDPFTTLGLRAGYSLNRTTNLYIEGRNITNYTYKEVYGLNKNLVSTSIKTGPIFVIGATIRL
SIO_010081: LHA26_RS19955
subclass of: SO_0000673
so part of: LHA26_RS19955
location: complement(25396..28242)
location: region:25396-28242:-1
so has part: feature:25396-28242:-1:exon

WP_252169039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25396-28242:-1:exon

LHA26_RS19960
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19960
old locus tag: LHA26_20000
so part of: sequence
location: complement(28230..29306)
location: region:28230-29306:-1
so has part: feature:28230-29306:-1:exon
subclass of: SO_0000010

position:28230:-1
position: 28230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29306:-1
position: 29306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28230-29306:-1:exon

LHA26_RS19960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19960
old locus tag: LHA26_20000
inference: COORDINATES: protein motif:HMM:NF016648.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FecR domain-containing protein
translation: MEWLARSERGLTPEEAQTLDEWLSLDPRNLGAFVQAQAAWIHAERAMALGDMPGDAAEPALSPIPIDAPDDHASGLVGRRIGRRAAIVGGLTIAASAVGVGYIGRDRSRDIRTAVGEIRRVPLAGGAVATLDTDTLLTVGGTDDRQLHLARGRMFLDVPQGRPAPTFVKAGDLSMTMLRGGMGLKALEGTPLLAFVTLGDLLVTQGWGILESRRSLILDQNRSLELPSGADLSARYVHPVSPSQLDDLRAWQSGMIAFGGETLAMAVRAFDRYGPTRIMVTDPSLAAQQITGLFKADDPKGFATAIAASFGAATAVEGNVVHIVKKKVPPYHPDYRAAEHPLRDAGYRRSSRGFGWFH
SIO_010081: LHA26_RS19960
subclass of: SO_0000673
so part of: LHA26_RS19960
location: complement(28230..29306)
location: region:28230-29306:-1
so has part: feature:28230-29306:-1:exon

WP_252169040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28230-29306:-1:exon

LHA26_RS19965
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19965
old locus tag: LHA26_20005
so part of: sequence
location: complement(29323..29931)
location: region:29323-29931:-1
so has part: feature:29323-29931:-1:exon
subclass of: SO_0000010

position:29323:-1
position: 29323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29931:-1
position: 29931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29323-29931:-1:exon

LHA26_RS19965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19965
old locus tag: LHA26_20005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020817622.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-70 family RNA polymerase sigma factor
translation: MSVTYLARSRWLAIHVLPHEPTFRAWLRGTARVSDADADDIVQETYAVLVKVENISAIRDPRAYALQTVRSIFLQGLRRSKVVTIEAFASLADCTIADEAPSPEQHANGQRELRRVEAAIATMPPQVRKVFWLRRVEGLSQRETAHRLALAEHTVEKYTAKGMKMLLRQFGQDGNGDARSSAYEPLKAVGIEASNARASNRR
SIO_010081: LHA26_RS19965
subclass of: SO_0000673
so part of: LHA26_RS19965
location: complement(29323..29931)
location: region:29323-29931:-1
so has part: feature:29323-29931:-1:exon

WP_252169041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29323-29931:-1:exon

LHA26_RS19970
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19970
old locus tag: LHA26_20010
pseudo: true
so part of: sequence
location: complement(<30330..30569)
location: region:30330-30569:-1
so has part: feature:30330-30569:-1:exon
subclass of: SO_0000010

position:30330:-1
position: 30330
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:30569:-1
position: 30569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30330-30569:-1:exon

LHA26_RS19970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19970
old locus tag: LHA26_20010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012452059.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LHA26_RS19970
subclass of: SO_0000673
so part of: LHA26_RS19970
location: complement(<30330..30569)
location: region:30330-30569:-1
so has part: feature:30330-30569:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30330-30569:-1:exon

LHA26_RS19975
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19975
old locus tag: LHA26_20015
pseudo: true
so part of: sequence
location: <30691..31179
location: region:30691-31179:1
so has part: feature:30691-31179:1:exon
subclass of: SO_0000010

position:30691:1
position: 30691
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:31179:1
position: 31179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30691-31179:1:exon

LHA26_RS19975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19975
old locus tag: LHA26_20015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012452103.1
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: response regulator
SIO_010081: LHA26_RS19975
subclass of: SO_0000673
so part of: LHA26_RS19975
location: <30691..31179
location: region:30691-31179:1
so has part: feature:30691-31179:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30691-31179:1:exon

LHA26_RS19980
type: Gene
subclass of: SO_0000704
RO_0002162: 1541170
locus tag: LHA26_RS19980
old locus tag: LHA26_20020
so part of: sequence
location: complement(31348..32778)
location: region:31348-32778:-1
so has part: feature:31348-32778:-1:exon
subclass of: SO_0000010

position:31348:-1
position: 31348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32778:-1
position: 32778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31348-32778:-1:exon

LHA26_RS19980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1541170
locus tag: LHA26_RS19980
old locus tag: LHA26_20020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018390189.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1182 family transposase
translation: MAYIEGHARDQALLLPASVEDYVAADNPVRFIDAFVDDLDLGSAGFVRSRPKATGRPGYDPADMLKLYLYGYLNRVRSSRRLAAEAARNLELIWLLRGVRPDFRTIADFRRDNRAAFKAVFRAFVMLCRKLDLFGRELLAVDGTRLKAVNSRSRNFSRERLATYLAAVDARLDRYLAELDQIDRGEDAAGTGRGDTLATKIAKLREQRQASAALLGQLEDSGEGQISLTDPDARLMVAHSKVTVGYNAQVAVDAKHSLIVEQHVTNACNDMSLLAPTAGAAMDALGVERIDAVADMGYHSGDDIVACEAAGITPYIPRPHRGTAVGNGLFPKERFRYDPQADVYHCPGGQVLDIRYASVTRGHLSVQYSSPAACAGCQIKARCTKGRWRRINRGEHEAVIERMAARLAERPDILVIRKSTVEHPFGSIKQWMNQGAFLMRGLDKVRAEFSLTALAYNLRRAITLIGVPGLIRAVQA
SIO_010081: LHA26_RS19980
subclass of: SO_0000673
so part of: LHA26_RS19980
location: complement(31348..32778)
location: region:31348-32778:-1
so has part: feature:31348-32778:-1:exon

WP_252166696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31348-32778:-1:exon