Sphingomonas morindae strain NBD5 chromosome 2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.
Genomic Analysis of Sphingopyxis sp. USTB-05 for Biodegrading Cyanobacterial Hepatotoxins
Submitted (12-OCT-2021) University of Science and Technology Beijing, School of Chemistry and Biological Engineering, 30 Xueyuan Road, Beijing 100083, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084931.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v3.6.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 360.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/26/2023 04:20:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,996\nCDSs (total) :: 3,933\nGenes (coding) :: 3,896\nCDSs (with protein) :: 3,896\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 7 of 37\nPseudo Genes (incomplete) :: 30 of 37\nPseudo Genes (internal stop) :: 3 of 37\nPseudo Genes (multiple problems) :: 3 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007404911.1
GO:0007165 - signal transduction [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010406408.1
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007404431.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004207753.1
COORDINATES: similar to AA sequence:RefSeq:WP_014848580.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014075654.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019368239.1
COORDINATES: similar to AA sequence:RefSeq:WP_017979752.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: protein motif:HMM:NF017119.2
COORDINATES: similar to AA sequence:RefSeq:WP_007403564.1
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011415044.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010406076.1
COORDINATES: similar to AA sequence:RefSeq:WP_010406078.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010215854.1
GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010215856.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367575.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010187432.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010188282.1
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024260.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010219873.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019831758.1
COORDINATES: similar to AA sequence:RefSeq:WP_015458283.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010127762.1
COORDINATES: similar to AA sequence:RefSeq:WP_019517627.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012050823.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007681946.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007681950.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010545264.1
COORDINATES: similar to AA sequence:RefSeq:WP_017665688.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017182407.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010187859.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054123.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010187861.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_010543036.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832655.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011444550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008993174.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013831456.1
PepSY-associated TM helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR01782.1
COORDINATES: protein motif:HMM:NF011964.0
GO:0006281 - DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada
COORDINATES: similar to AA sequence:RefSeq:WP_010186300.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010216905.1
COORDINATES: similar to AA sequence:RefSeq:WP_010163745.1
GO:0015267 - channel activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_010127164.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_019516957.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014625.2
GO:0019213 - deacetylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183438.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019832425.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007404992.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019832427.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_019832430.1
type VI secretion system accessory protein TagJ
COORDINATES: similar to AA sequence:RefSeq:WP_019832431.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_019832432.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_019832433.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_019832434.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012298.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF039312.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832437.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019832438.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010187904.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_019832440.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_019832441.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:NF021393.2
type VI secretion system-associated protein TagF
COORDINATES: similar to AA sequence:RefSeq:WP_019832443.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019832445.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:WP_019832447.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_019832448.1
type VI secretion system ImpA family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010161670.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405150.1
GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010184077.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007679624.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207388.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459295.1
GO:0047770 - carboxylate reductase activity [Evidence IEA]
aldehyde oxidoreductase molybdenum-binding subunit PaoC
COORDINATES: similar to AA sequence:RefSeq:WP_007404396.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_010185865.1
GO:0047770 - carboxylate reductase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
aldehyde dehydrogenase iron-sulfur subunit PaoA
COORDINATES: protein motif:HMM:NF013989.2
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_019517891.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686354.1
COORDINATES: similar to AA sequence:RefSeq:WP_008070508.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007686692.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010219329.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459083.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212114.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829641.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: protein motif:HMM:NF018894.2
GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010543826.1
COORDINATES: similar to AA sequence:RefSeq:WP_019830892.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_012049011.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187474.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019517940.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164896.1
ATP-grasp fold amidoligase family protein
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019128.2
COORDINATES: similar to AA sequence:RefSeq:WP_010187358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460073.1
COORDINATES: protein motif:HMM:NF016190.2
COORDINATES: protein motif:HMM:NF015102.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010402346.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_019516370.1
GO:0004518 - nuclease activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0009650 - UV protection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008828601.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_010186214.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980396.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832531.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0001510 - RNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017977578.1
COORDINATES: protein motif:HMM:NF024701.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025453.2
COORDINATES: protein motif:HMM:NF012340.2
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_019053123.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404612.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603377.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831623.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008600245.1
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021376.2
COORDINATES: similar to AA sequence:RefSeq:WP_008995070.1
bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019517370.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686646.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686648.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219609.1
COORDINATES: protein motif:HMM:NF015724.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007686683.1
COORDINATES: similar to AA sequence:RefSeq:WP_019831932.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010215154.1
COORDINATES: similar to AA sequence:RefSeq:WP_007014271.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819682.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009822827.1
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019834337.1
GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]
GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1
GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_014471148.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019834423.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_013849254.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020819624.1
COORDINATES: similar to AA sequence:RefSeq:WP_010545836.1
COORDINATES: similar to AA sequence:RefSeq:WP_010407680.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123699.1
COORDINATES: similar to AA sequence:RefSeq:WP_018250705.1
COORDINATES: similar to AA sequence:RefSeq:WP_010216098.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010404953.1
COORDINATES: similar to AA sequence:RefSeq:WP_017668731.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008183.0
COORDINATES: protein motif:HMM:NF016807.2
COORDINATES: similar to AA sequence:RefSeq:WP_007404559.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010163090.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_017501909.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339749.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603815.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015459806.1
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007686844.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502306.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950784.1
COORDINATES: similar to AA sequence:RefSeq:WP_007403470.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017669729.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010544917.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459133.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009823575.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164241.1
COORDINATES: similar to AA sequence:RefSeq:WP_007405969.1
COORDINATES: protein motif:HMM:NF025214.2
COORDINATES: similar to AA sequence:RefSeq:WP_015459098.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF022039.2
COORDINATES: similar to AA sequence:RefSeq:WP_010217386.1
COORDINATES: similar to AA sequence:RefSeq:WP_007678083.1
COORDINATES: similar to AA sequence:RefSeq:WP_019833420.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486579.1
COORDINATES: protein motif:HMM:TIGR01783.1
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_007679886.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832767.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164813.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_007712346.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017978048.1
COORDINATES: similar to AA sequence:RefSeq:WP_017978047.1
COORDINATES: similar to AA sequence:RefSeq:WP_019516219.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017978045.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:TIGR04433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681901.1
COORDINATES: similar to AA sequence:RefSeq:WP_010544613.1
COORDINATES: similar to AA sequence:RefSeq:WP_010338789.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_018250667.1
COORDINATES: protein motif:HMM:NF025034.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019831991.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019832813.1
COORDINATES: similar to AA sequence:RefSeq:WP_013041265.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217705.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003519145.1
COORDINATES: similar to AA sequence:RefSeq:WP_007687927.1
COORDINATES: similar to AA sequence:RefSeq:WP_019516345.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02118.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958405.1
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_010215283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010404520.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_013041302.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: protein motif:HMM:NF036516.2
COORDINATES: similar to AA sequence:RefSeq:WP_019831665.1
cyclic nucleotide-binding domain-containing thioredoxin-disulfide reductase
COORDINATES: protein motif:HMM:NF013377.2
COORDINATES: similar to AA sequence:RefSeq:WP_007684620.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684619.1
GO:0019172 - glyoxalase III activity [Evidence IEA]
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020818074.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007706940.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_010188150.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558032.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019311.2
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008993201.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019832738.1
COORDINATES: protein motif:HMM:TIGR01730.1
COORDINATES: protein motif:HMM:TIGR00914.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: similar to AA sequence:RefSeq:WP_019369418.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008828625.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012048722.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019833574.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019833573.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019833572.1
COORDINATES: similar to AA sequence:RefSeq:WP_010183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_010183488.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008032.0
dicarboxylate transporter/tellurite-resistance protein TehA
COORDINATES: similar to AA sequence:RefSeq:WP_010187462.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008831037.1
COORDINATES: similar to AA sequence:RefSeq:WP_010216087.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207418.1
COORDINATES: similar to AA sequence:RefSeq:WP_008833164.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_007403247.1
COORDINATES: similar to AA sequence:RefSeq:WP_019516389.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219491.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219489.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008830044.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459016.1
COORDINATES: similar to AA sequence:RefSeq:WP_010406727.1
COORDINATES: similar to AA sequence:RefSeq:WP_003300398.1
COORDINATES: similar to AA sequence:RefSeq:WP_012202301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014078004.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832834.1
COORDINATES: protein motif:HMM:NF005065.0
COORDINATES: similar to AA sequence:RefSeq:WP_007712321.1
COORDINATES: similar to AA sequence:RefSeq:WP_010183255.1
COORDINATES: similar to AA sequence:RefSeq:WP_010188382.1
COORDINATES: similar to AA sequence:RefSeq:WP_010188387.1
COORDINATES: similar to AA sequence:RefSeq:WP_010163390.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187354.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187355.1
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404328.1
COORDINATES: similar to AA sequence:RefSeq:WP_014848446.1
COORDINATES: similar to AA sequence:RefSeq:WP_017499637.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010162434.1
COORDINATES: similar to AA sequence:RefSeq:WP_010183462.1
COORDINATES: similar to AA sequence:RefSeq:WP_007405085.1
COORDINATES: similar to AA sequence:RefSeq:WP_017182746.1
COORDINATES: similar to AA sequence:RefSeq:WP_008603289.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010214478.1
COORDINATES: similar to AA sequence:RefSeq:WP_010215991.1
COORDINATES: protein motif:HMM:NF014025.2
COORDINATES: similar to AA sequence:RefSeq:WP_007403666.1
COORDINATES: protein motif:HMM:NF024765.2
COORDINATES: similar to AA sequence:RefSeq:WP_006834251.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010160616.1
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_010404462.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019368048.1
COORDINATES: protein motif:HMM:NF025341.2
COORDINATES: protein motif:HMM:NF021508.2
COORDINATES: protein motif:HMM:NF023288.2
N-acetylmuramidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007687629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009821971.1
COORDINATES: similar to AA sequence:RefSeq:WP_010544646.1
COORDINATES: protein motif:HMM:NF024893.2
COORDINATES: protein motif:HMM:NF012961.2
COORDINATES: similar to AA sequence:RefSeq:WP_009823576.1
COORDINATES: similar to AA sequence:RefSeq:WP_010185891.1
COORDINATES: protein motif:HMM:NF018928.2
COORDINATES: similar to AA sequence:RefSeq:WP_010185893.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010185896.1
COORDINATES: similar to AA sequence:RefSeq:WP_010163876.1
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019516841.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164154.1
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF021523.2
COORDINATES: similar to AA sequence:RefSeq:WP_019831688.1
GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019369654.1
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00791.1
GO:0015295 - solute:proton symporter activity [Evidence IEA]
GO:0015718 - monocarboxylic acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010546213.1
COORDINATES: similar to AA sequence:RefSeq:WP_017672238.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823586.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: similar to AA sequence:RefSeq:WP_007404960.1
COORDINATES: similar to AA sequence:RefSeq:WP_017979804.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404965.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832936.1
COORDINATES: similar to AA sequence:RefSeq:WP_010186221.1
COORDINATES: similar to AA sequence:RefSeq:WP_010161158.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207060.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015456934.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367836.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01725
SAM-I-IV-variant riboswitch; SAM riboswitches modulate the expression of downstream genes in response to levels of S-adenosylmethionine; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010238269.1
COORDINATES: similar to AA sequence:RefSeq:WP_010186934.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367814.1
COORDINATES: similar to AA sequence:RefSeq:WP_004209669.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010218095.1
COORDINATES: similar to AA sequence:RefSeq:WP_007715050.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019370929.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996490.1
GO:0009279 - cell outer membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008831934.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010187797.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823684.1
COORDINATES: similar to AA sequence:RefSeq:WP_010162515.1
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_010338100.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_010338101.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_007681729.1
COORDINATES: similar to AA sequence:RefSeq:WP_017978035.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832888.1
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: protein motif:HMM:NF015737.2
autotransporter-associated beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: similar to AA sequence:RefSeq:WP_008830103.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830104.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830106.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830107.1
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008830108.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008830109.1
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: similar to AA sequence:RefSeq:WP_020818019.1
COORDINATES: similar to AA sequence:RefSeq:WP_020480448.1
COORDINATES: similar to AA sequence:RefSeq:WP_010162634.1
COORDINATES: similar to AA sequence:RefSeq:WP_017668314.1
COORDINATES: similar to AA sequence:RefSeq:WP_017979923.1
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: similar to AA sequence:RefSeq:WP_007405659.1
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: similar to AA sequence:RefSeq:WP_017501016.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007403908.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0052737 - pyruvate dehydrogenase (quinone) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0006090 - pyruvate metabolic process [Evidence IEA]
ubiquinone-dependent pyruvate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010184906.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004457 - lactate dehydrogenase activity [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]
FMN-dependent L-lactate dehydrogenase LldD
COORDINATES: similar to AA sequence:RefSeq:WP_010544063.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010160856.1
COORDINATES: similar to AA sequence:RefSeq:WP_019831419.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010338258.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019831065.1
COORDINATES: similar to AA sequence:RefSeq:WP_004208376.1
COORDINATES: similar to AA sequence:RefSeq:WP_004208377.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187060.1
COORDINATES: similar to AA sequence:RefSeq:WP_019831061.1
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007712304.1
COORDINATES: similar to AA sequence:RefSeq:WP_007712303.1
COORDINATES: similar to AA sequence:RefSeq:WP_010162069.1
COORDINATES: similar to AA sequence:RefSeq:WP_017977429.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010407411.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017671693.1
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_015458745.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404840.1
COORDINATES: similar to AA sequence:RefSeq:WP_017671617.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_019369127.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017980248.1
COORDINATES: similar to AA sequence:RefSeq:WP_010163716.1
COORDINATES: similar to AA sequence:RefSeq:WP_010545686.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834360.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.